https://github.com/daylily-informatics/daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
aws
bioinformatics
bioinformatics-pipeline
budgeting
ec2
ephemeral
genomic-data-analysis
giab
human-genome
informatics
ngs
parallel-cluster
scalable
scaling
slurm
snakemake
snv-call
wgs
Added: over 1 year ago - Last Synced: 11 months ago
- Created: April 29, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 313
- Committers: 12
- Issues: 0
- Pull Requests: 17
- Owner: Daylily-Informatics
- Stars: 17
- Forks: 0
- Packages: 0
https://github.com/xinglab-ai/genomap
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
bioinfomatics-pipeline
bioinformatics
bioinformatics-tool
biomarker-discovery
biomarkers
cell-annotation
classification-algorithm
data-classification
deep-learning
genomic-data-analysis
genomics
genomics-visualization
multi-omic-integration
regression-algorithms
single-cell
tabular-data
trajectory-inference
visualization
Added: over 1 year ago - Last Synced: 11 months ago
- Created: January 14, 2023
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 108
- Committers: 6
- Issues: 1
- Pull Requests: 45
- Owner: xinglab-ai
- Stars: 11
- Forks: 2
- Packages: 1
- Downloads: 178
