Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/cihga39871/pipelines.jl

A lightweight and powerful Julia package for computational pipelines and workflows.
bioinformatics bioinformatics-pipeline computational-pipelines julia pipeline pipelines ruffus snakemake workflow workflows
Added: over 1 year ago - Last Synced: about 1 year ago - Created: March 23, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 155
  • Committers: 2
  • Issues: 13
  • Pull Requests: 1
  • Owner: cihga39871
  • Stars: 45
  • Forks: 2
  • Packages: 1
https://github.com/daylily-informatics/daylily

A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
aws bioinformatics bioinformatics-pipeline budgeting ec2 ephemeral genomic-data-analysis giab human-genome informatics ngs parallel-cluster scalable scaling slurm snakemake snv-call wgs
Added: over 1 year ago - Last Synced: about 1 year ago - Created: April 29, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 313
  • Committers: 12
  • Issues: 0
  • Pull Requests: 17
https://github.com/stjude-rust-labs/sprocket

A package manager for Workflow Description Language files.
bioinformatics bioinformatics-pipeline wdl wdl-devtools wdl-workflow workflow workflow-engine
Added: over 1 year ago - Last Synced: about 1 year ago - Created: December 17, 2023

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Rust
  • Commits: 7
  • Committers: 1
  • Issues: 1
  • Pull Requests: 4
https://github.com/pepkit/looper

A job submitter for Portable Encapsulated Projects
bioinformatics bioinformatics-pipeline ngs pipeline-submission-engine
Added: over 1 year ago - Last Synced: about 1 year ago - Created: November 16, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 2606
  • Committers: 23
  • Issues: 195
  • Pull Requests: 104
  • Owner: pepkit
  • Stars: 19
  • Forks: 7
  • Packages: 2
  • Downloads: 410