https://github.com/daylily-informatics/daylily
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
https://github.com/daylily-informatics/daylily
Keywords
aws bioinformatics bioinformatics-pipeline budgeting ec2 ephemeral genomic-data-analysis giab human-genome informatics ngs parallel-cluster scalable scaling slurm snakemake snv-call wgs
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
A NGS analysis framework for WGS data, which automates the entire process of spinning up AWS EC2 spot instances and processing FASTQ to snvVCF in <60m, for dollars a sample and achieving Fscores of 0.998.
- Host: GitHub
- URL: https://github.com/daylily-informatics/daylily
- Owner: Daylily-Informatics
- License: gpl-3.0
- Created: 2023-04-29T21:51:19.000Z (about 2 years ago)
- Default Branch: main
- Last Pushed: 2023-10-24T17:50:13.000Z (over 1 year ago)
- Last Synced: 2024-06-02T10:02:29.427Z (11 months ago)
- Topics: aws, bioinformatics, bioinformatics-pipeline, budgeting, ec2, ephemeral, genomic-data-analysis, giab, human-genome, informatics, ngs, parallel-cluster, scalable, scaling, slurm, snakemake, snv-call, wgs
- Language: Python
- Homepage: http://daylilyinformatics.com
- Size: 290 MB
- Stars: 17
- Watchers: 7
- Forks: 0
- Open Issues: 1
- Releases: 0
-
Metadata Files:
- Readme: README.md
- License: LICENSE
Owner metadata
- Name: Daylily Informatics
- Login: Daylily-Informatics
- Email: [email protected]
- Kind: organization
- Description: Multi-omic Informatics and Operations Consulting Services
- Website: http://www.daylilyinformatics.com
- Location: United States of America
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/129009633?v=4
- Repositories: 1
- Last ynced at: 2023-04-22T04:21:38.013Z
- Profile URL: https://github.com/Daylily-Informatics
GitHub Events
Total
- Create event: 22
- Issues event: 1
- Release event: 3
- Watch event: 20
- Issue comment event: 1
- Public event: 1
- Push event: 63
- Pull request event: 33
Last Year
- Create event: 1
- Issue comment event: 1
- Issues event: 1
- Pull request event: 2
- Watch event: 5
Committers metadata
Last synced: over 1 year ago
Total Commits: 313
Total Committers: 12
Avg Commits per committer: 26.083
Development Distribution Score (DDS): 0.393
Commits in past year: 313
Committers in past year: 12
Avg Commits per committer in past year: 26.083
Development Distribution Score (DDS) in past year: 0.393
| Name | Commits | |
|---|---|---|
| (major) john (major) | i****o@g****m | 190 |
| John Major | j****n@d****m | 98 |
| John Major | j****n@j****r | 14 |
| AWS ParallelCluster user | c****s@i****r | 2 |
| day | d****y@r****l | 2 |
| AWS ParallelCluster user | c****s@i****l | 1 |
| AWS ParallelCluster user | c****s@i****l | 1 |
| AWS ParallelCluster user | c****s@i****l | 1 |
| daylily | d****y@r****l | 1 |
| AWS ParallelCluster user | c****s@i****l | 1 |
| AWS ParallelCluster user | c****s@i****l | 1 |
| John Major | d****y@d****m | 1 |
Committer domains:
- daylilyinformatics.com: 2
- ip-10-0-0-72.us-west-2.compute.internal: 1
- ip-10-0-0-95.us-west-2.compute.internal: 1
- ip-10-0-0-69.us-west-2.compute.internal: 1
- ip-10-0-0-121.us-west-2.compute.internal: 1
- ip-10-0-0-113.us-west-2.compute.internal: 1
- i128-6-dy-v32xl-4.daylily-v016.pcluster: 1
- john.major: 1
Issue and Pull Request metadata
Last synced: over 1 year ago
Total issues: 0
Total pull requests: 17
Average time to close issues: N/A
Average time to close pull requests: less than a minute
Total issue authors: 0
Total pull request authors: 1
Average comments per issue: 0
Average comments per pull request: 0.06
Merged pull request: 17
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 17
Past year average time to close issues: N/A
Past year average time to close pull requests: less than a minute
Past year issue authors: 0
Past year pull request authors: 1
Past year average comments per issue: 0
Past year average comments per pull request: 0.06
Past year merged pull request: 17
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
Top Pull Request Authors
- iamh2o (17)
Top Issue Labels
Top Pull Request Labels
Dependencies
- condaforge/mambaforge latest build
Score: 5.375278407684165