https://github.com/pepkit/looper
A job submitter for Portable Encapsulated Projects
https://github.com/pepkit/looper
Keywords
bioinformatics bioinformatics-pipeline ngs pipeline-submission-engine
Keywords from Contributors
interface pipelines reporting reproducibility results conversion jsonschema pep
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
A job submitter for Portable Encapsulated Projects
- Host: GitHub
- URL: https://github.com/pepkit/looper
- Owner: pepkit
- License: bsd-2-clause
- Created: 2017-11-16T16:39:21.000Z (over 7 years ago)
- Default Branch: master
- Last Pushed: 2024-03-21T19:43:51.000Z (about 1 year ago)
- Last Synced: 2024-03-27T04:51:25.403Z (about 1 year ago)
- Topics: bioinformatics, bioinformatics-pipeline, ngs, pipeline-submission-engine
- Language: Python
- Homepage: http://looper.databio.org
- Size: 3.86 MB
- Stars: 19
- Watchers: 4
- Forks: 7
- Open Issues: 44
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Contributing: docs/contributing.md
- License: LICENSE.txt
- Support: docs/support.md
Owner metadata
- Name: Portable Encapsulated Projects
- Login: pepkit
- Email:
- Kind: organization
- Description: Standardized sample metadata structure for biological research
- Website: https://pep.databio.org
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/29280461?v=4
- Repositories: 44
- Last ynced at: 2024-03-27T04:37:48.031Z
- Profile URL: https://github.com/pepkit
Committers metadata
Last synced: about 1 year ago
Total Commits: 2,606
Total Committers: 23
Avg Commits per committer: 113.304
Development Distribution Score (DDS): 0.653
Commits in past year: 261
Committers in past year: 6
Avg Commits per committer in past year: 43.5
Development Distribution Score (DDS) in past year: 0.437
| Name | Commits | |
|---|---|---|
| Vince Reuter | v****r@g****m | 903 |
| Michal Stolarczyk | s****3@g****m | 556 |
| nsheff | n****f | 464 |
| Donald Campbell | 1****r | 153 |
| nsheff | n****n@c****g | 138 |
| jpsmith5 | j****h@v****u | 105 |
| Andre Rendeiro | a****o@g****m | 94 |
| Khoroshevskyi | s****0@g****m | 44 |
| Vince | v****r | 35 |
| Charles Dietz | c****z@c****t | 25 |
| ayobi | 1****i | 24 |
| jklughammer | j****r@c****t | 20 |
| aaron-gu | a****m@v****u | 19 |
| xuebingjie1990 | x****e@h****m | 8 |
| Aaron O'Brien | o****g@g****m | 4 |
| Nishant Jha | n****1@g****m | 3 |
| fhalbritter | f****r@c****t | 3 |
| olhakholod | o****d@g****m | 2 |
| Aaron Gu | 3****u | 2 |
| Bingjie Xue | b****r@c****u | 1 |
| Nikolaus Fortelny | n****y@n****t | 1 |
| Simeon Carstens | s****s@t****o | 1 |
| mfarlik | m****k@c****t | 1 |
Committer domains:
- cemm.oeaw.ac.at: 4
- virginia.edu: 2
- tweag.io: 1
- n001.hpc.cemm.at: 1
- cphg-dlw6ch2-sheffieldlab.eservices.virginia.edu: 1
- code.databio.org: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 195
Total pull requests: 104
Average time to close issues: about 1 year
Average time to close pull requests: about 1 month
Total issue authors: 20
Total pull request authors: 7
Average comments per issue: 3.06
Average comments per pull request: 1.16
Merged pull request: 92
Bot issues: 0
Bot pull requests: 0
Past year issues: 91
Past year pull requests: 73
Past year average time to close issues: 3 months
Past year average time to close pull requests: 5 days
Past year issue authors: 9
Past year pull request authors: 6
Past year average comments per issue: 2.34
Past year average comments per pull request: 1.19
Past year merged pull request: 67
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- nsheff (107)
- donaldcampbelljr (36)
- vreuter (20)
- simeoncarstens (5)
- stolarczyk (4)
- arpanda (3)
- khoroshevskyi (3)
- aaron-gu (2)
- afrendeiro (2)
- xuebingjie1990 (2)
- svsuresh (2)
- zhangzhen (1)
- ShannonDaddy (1)
- rcorces (1)
- nleroy917 (1)
Top Pull Request Authors
- donaldcampbelljr (50)
- nsheff (18)
- vreuter (17)
- khoroshevskyi (7)
- ayobi (6)
- simeoncarstens (4)
- zz1874 (2)
Top Issue Labels
- likely-solved (115)
- bug (24)
- docs (19)
- question (18)
- enhancement (17)
- priority-low (15)
- good first issue (10)
- brainstorming (7)
- tests (5)
- priority-high (5)
- wontfix (4)
- messaging (3)
- refactor (3)
- versioning (2)
- duplicate (2)
- CI (1)
- UX (1)
Top Pull Request Labels
- versioning (3)
Package metadata
- Total packages: 2
-
Total downloads:
- pypi: 410 last-month
- Total docker downloads: 18
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 8 (may contain duplicates)
- Total versions: 29
- Total maintainers: 5
pypi.org: looper
A pipeline submission engine that parses sample inputs and submits pipelines for each sample.
- Homepage: https://github.com/pepkit/looper
- Documentation: https://looper.readthedocs.io/
- Licenses: BSD2
- Latest release: 1.7.0 (published over 1 year ago)
- Last Synced: 2024-06-06T14:46:40.932Z (11 months ago)
- Versions: 21
- Dependent Packages: 0
- Dependent Repositories: 5
- Downloads: 381 Last month
- Docker Downloads: 18
-
Rankings:
- Docker downloads count: 3.774%
- Dependent repos count: 6.602%
- Dependent packages count: 10.126%
- Average: 10.7%
- Forks count: 14.239%
- Stargazers count: 14.246%
- Downloads: 15.215%
- Maintainers (4)
pypi.org: loopercli
A pipeline submission engine that parses sample inputs and submits pipelines for each sample.
- Homepage: https://github.com/pepkit/looper
- Documentation: https://loopercli.readthedocs.io/
- Licenses: BSD2
- Latest release: 0.12.6 (published about 5 years ago)
- Last Synced: 2024-05-28T19:42:49.772Z (12 months ago)
- Versions: 8
- Dependent Packages: 0
- Dependent Repositories: 3
- Downloads: 29 Last month
-
Rankings:
- Dependent repos count: 8.939%
- Dependent packages count: 10.126%
- Forks count: 14.239%
- Stargazers count: 14.246%
- Average: 17.53%
- Downloads: 40.102%
- Maintainers (4)
Dependencies
- attmap >=0.12.7
- colorama >=0.3.9
- divvy >=0.5.0
- eido >=0.1.3
- jinja2 *
- logmuse >=0.2.0
- pandas >=0.20.2
- peppy >=0.31.0
- pyyaml >=3.12
- ubiquerg >=0.5.2
- looper *
- markdown-include *
- mkdocs >=1.0
- pydoc-markdown *
- mock * test
- pytest * test
- pytest-cov * test
- pytest-remotedata * test
- veracitools * test
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
Score: 13.36993882439838