Categories - Biosphere - Plants and Vegetation

Topics

phenology, vegetation-period, vegetation-dynamics, carbon-cycling, fire-dynamics, permafrost-dynamics, soil-thermal-dynamics, national-phenology-network, plant-physiology, plant-phenotyping, plantcv, dgvm, growth, p-model, bien, botanical, range-maps, openplantpathology, greenness-exposure, shiny-r, jags, land-surface-phenology, model-calibration, phenology-models, vegetation-phenology, Functional Structural Plant model, Nutrient uptake, Plant biology, Root architecture, SimRoot, hut23-240, chemical-compounds, genetics, genotypes, germinate, pedigree, phenotypes, plant-genetic-resources,

Projects

PlantCV

Plant phenotyping using computer vision.

bioinformatics image-analysis plant-phenotyping plantcv science

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 19.3

BioCro

A model that predicts plant growth over time given crop-specific parameters and environmental data as input.

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 18.6

rnpn

R client for interacting with the USA National Phenology Network data web services.

data national-phenology-network phenology r r-package rstats species web-api

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 17.6

photosynthesis

An R package with modeling tools for C3 photosynthesis, as well as analytical tools for curve-fitting plant ecophysiology responses.

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 15.3

pyrealm

Providing an integrated toolbox for modelling plant productivity, growth and demography using Python.

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 14.8

vegperiod

Provides methods to calculate climatological or thermal growing seasons solely based on daily mean temperatures and the day of the year.

dwd growing-season r r-package vegetation-period

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 14.1

vegperiod

Provides methods to calculate climatological or thermal growing seasons solely based on daily mean temperatures and the day of the year.

dwd growing-season r r-package vegetation-period

Biosphere - Plants and Vegetation - Last synced: 25 Jan 2024 - Ranking: 13.4

rsofun

R framework for site-scale simulations of ecosystem processes.

dgvm growth modeling p-model simulation vegetation-dynamics

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 12.4

phenofit

A state-of-the-art remote sensing vegetation phenology extraction package.

phenology remote-sensing

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 11.4

rWCVP

A package for accessing and using plant name and distribution data from the World Checklist of Vascular Plants.

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 10.5

dvm-dos-tem

A process based Dynamic Vegetation, Dynamic Organic Soil, Terrestrial Ecosystem Model.

carbon-cycling ecosystem-modeling fire-dynamics permafrost-dynamics soil-thermal-dynamics vegetation-dynamics

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 8.5

Deep Plant Phenomics

A platform for plant phenotyping using deep learning.

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 7.6

The focus of CRootBox is the simulation of different types of root architecture, and to provide a generic interface for coupling with arbitrary soil/environmental models, e.g., in order to determine the impact of specific root architectures on function.

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 7.2

plant

A package for modeling forest trait ecology and evolution.

c-plus-plus demography dynamic ecology evolution forests plant-physiology r science-research simulation trait

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 7.0

Plants of the World Online

An international collaborative programme that has as a primary aim to make available digitized data of the world's flora gathered from the past 250 years of botanical exploration and research.

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 6.5

phenor

The framework leverages measurements of vegetation phenology from four common phenology observation datasets combined with global retrospective and projected climate data.

model-calibration phenocam phenology-models r-package rstats vegetation-phenology

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 6.4

OpenSimRoot

Source code for simulating root architecture, nutrient and water uptake and more.

Functional Structural Plant model Nutrient uptake Plant biology Root architecture SimRoot simulation

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 6.3

greenR

An R package that enables the quantification, analysis, and visualization of urban greenness within city networks.

cities ggplot2 greenness-exposure leaflet open-source openstreetmap r rstats shiny-r visualization

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 5.6

RBIEN

Tools for accessing the Botanical Information and Ecology Network database.

bien biodiversity botanical ecology open-science phylogeny plant r range-maps traits

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 5.4

austraits

R package for accessing the AusTraits Plant database, an open-source, harmonized database of Australian plant trait data.

australia database plants traits

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 5.4

blsp

A Bayesian hierarchical model that quantifies long-term annual land surface phenology from sparse time series of vegetation indices.

jags land-surface-modeling land-surface-phenology landsat phenology r remote-sensing

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 5.2

OpenPlantPathology

Open Plant Pathology is an initiative that supports and promotes the spread of all open, transparent and reproducible practices in the field of plant pathology.

openplantpathology reproducible-research

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 5.0

Germinate

An open source plant database infrastructure and application programming platform on which complex data from genetic resource collections can be stored, queried and visualized.

chemical-compounds climate-data database genetics genotypes germinate mysql pedigree phenotypes plant-genetic-resources vuejs website

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 3.1

kewr

Meant to make accessing data from one of Royal Botanic Gardenn Kew easier and to provide a consistent interface their public APIs.

package r

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: 3.0

Quantitative Plant

A website presenting image analysis software tools and models for plants.

Biosphere - Plants and Vegetation - Last synced: 25 Jan 2024 - Ranking: 0.0

monitoring-ecosystem-resilience

The focus is understanding vegetation patterns in semi-arid environments.

hut23 hut23-240

Biosphere - Plants and Vegetation - Last synced: 27 Apr 2025 - Ranking: -Infinity

Contributors

Maëlle Salmon [email protected]

OST Projects: 69
Categories: Atmosphere, Biosphere, Climate Change, Consumption, Energy Systems, Hydrosphere, Natural Resources, Renewable Energy, Sustainable Development
Sub Categories: Air Quality, Avian Monitoring and Analysis, Biodiversity Data Access and Management, Biodiversity Data Cleaning and Standardization, Biodiversity and Species Distribution, Climate Data Access and Visualization, Climate Data Processing and Analysis, Education, Energy Data Accessibility and Integration, Energy System Data Access, Environmental Satellites, Forest Modeling and Analysis, Forest Observation and Management, Marine Life and Fishery, Meteorological Observation and Forecast, Mobility and Transportation, Ocean and Hydrology Data Access, Photovoltaics and Solar Energy, Plants and Vegetation, Soil and Land, Water Supply, Water Supply and Quality, Wind Energy
Topics: cycle, cycling, desire-lines, origin-destination, pubic-transport, route-network, routes, routing, transport-planning, transportation and 394 more

Jeroen Ooms [email protected]

OST Projects: 33
Categories: Atmosphere, Biosphere, Climate Change, Consumption, Hydrosphere, Natural Resources, Sustainable Development
Sub Categories: Air Quality, Biodiversity Data Access and Management, Biodiversity Data Cleaning and Standardization, Biodiversity and Species Distribution, Biomass, Climate Data Access and Visualization, Climate Data Processing and Analysis, Data Catalogs and Interfaces, Environmental Satellites, Freshwater and Hydrology, Marine Life and Fishery, Meteorological Observation and Forecast, Mobility and Transportation, Natural Hazard and Storm, Ocean and Hydrology Data Access, Plants and Vegetation, Soil and Land, Terrestrial Wildlife, Water Supply, Water Supply and Quality
Topics: cycle, cycling, desire-lines, origin-destination, pubic-transport, route-network, routes, routing, transport-planning, transportation and 339 more

Scott Chamberlain [email protected]

OST Projects: 30
Categories: Biosphere, Climate Change, Consumption, Natural Resources, Sustainable Development
Sub Categories: Air Quality, Biodiversity Data Access and Management, Biodiversity and Species Distribution, Climate Data Access and Visualization, Climate Data Processing and Analysis, Data Catalogs and Interfaces, Marine Life and Fishery, Mobility and Transportation, Plants and Vegetation, Water Supply, Water Supply and Quality
Topics: cycle, cycling, desire-lines, origin-destination, pubic-transport, route-network, routes, routing, transport-planning, transportation and 228 more

Rekyt [email protected]

OST Projects: 25
Categories: Biosphere, Natural Resources, Sustainable Development
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity Data Access and Management, Biodiversity and Species Distribution, Education, Plants and Vegetation, Soil and Land, Species Distribution Modeling
Topics: biodiversity, biology, darwincore, nomenclature, taxize, taxonomy, landscape-ecology, landscape-metrics, bien, botanical and 72 more

Adam H. Sparks [email protected]

OST Projects: 21
Categories: Biosphere, Climate Change, Consumption, Renewable Energy
Sub Categories: Agriculture and Nutrition, Climate Data Access and Visualization, Climate Data Processing and Analysis, Photovoltaics and Solar Energy, Plants and Vegetation
Topics: daily-data, daily-weather, data-access, global-data, gsod, historical-data, historical-weather, ncdc, ncei, weather and 40 more

Zhian N. Kamvar [email protected]

OST Projects: 17
Categories: Biosphere, Sustainable Development
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity and Species Distribution, Education, Plants and Vegetation
Topics: openplantpathology, carpentries, data-carpentry, ecology, english, stable, workshop, data-wrangling, lesson, data-management and 39 more

steven2249 [email protected]

OST Projects: 17
Categories: Biosphere, Climate Change, Consumption
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution, Climate Data Access and Visualization, Mobility and Transportation, Plants and Vegetation
Topics: cycle, cycling, desire-lines, origin-destination, pubic-transport, route-network, routes, routing, transport-planning, transportation and 38 more

khufkens [email protected]

OST Projects: 10
Categories: Biosphere, Climate Change, Cryosphere, Emissions, Sustainable Development
Sub Categories: Climate Data Access and Visualization, Climate Data Processing and Analysis, Curated Lists, Emission Observation and Modeling, Environmental Satellites, Knowledge Platforms, Plants and Vegetation, Snow and Permafrost, Terrestrial Animals, Terrestrial Wildlife
Topics: phenocam, phenocam-data, phenology-modelling, cds, climate-data, copernicus, ecmwf-api, ecmwf-services, biodiversity, carbon-emissions and 92 more

Adam H. Sparks [email protected]

OST Projects: 8
Categories: Biosphere, Climate Change, Consumption, Renewable Energy, Sustainable Development
Sub Categories: Agriculture and Nutrition, Climate Data Access and Visualization, Climate Data Processing and Analysis, Climate Data Visualization and Access, Education, Photovoltaics and Solar Energy, Plants and Vegetation
Topics: chirps, climatology, precipitation-data, daily-data, daily-weather, data-access, global-data, gsod, historical-data, historical-weather and 182 more

David LeBauer [email protected]

OST Projects: 7
Categories: Atmosphere, Biosphere, Climate Change, Renewable Energy, Sustainable Development
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution, Bioenergy, Climate Data Access and Visualization, Education, Meteorological Observation and Forecast, Plants and Vegetation
Topics: biodiversity, biology, darwincore, nomenclature, taxize, taxonomy, agriculture, crops, ecosystem-models, pecan and 49 more

David LeBauer [email protected]

OST Projects: 6
Categories: Biosphere, Climate Change, Consumption, Sustainable Development
Sub Categories: Agriculture and Nutrition, Biodiversity Data Access and Management, Biodiversity and Species Distribution, Climate Data Access and Visualization, Curated Lists, Plants and Vegetation
Topics: national-phenology-network, phenology, species, cds, climate-data, copernicus, ecmwf-api, ecmwf-services, agricultural, agriculture and 41 more

Emmanuel Ferdman [email protected]

OST Projects: 6
Categories: Atmosphere, Biosphere, Consumption, Emissions, Sustainable Development
Sub Categories: Carbon Intensity and Accounting, Data Catalogs and Interfaces, Meteorological Observation and Forecast, Mobility and Transportation, Plants and Vegetation
Topics: apptainer, rootless-containers, singularity, singularity-container, opencv, careers, certification, community, curriculum, freecodecamp and 79 more

Shawn P. Serbin [email protected]

OST Projects: 6
Categories: Biosphere, Climate Change, Renewable Energy
Sub Categories: Biodiversity and Species Distribution, Bioenergy, Earth and Climate Modeling, Ecological and Environmental Modeling, Forest Modeling and Analysis, Forest Observation and Management, Forest Remote Sensing, Plants and Vegetation
Topics: cyberinfrastructure, data-assimilation, ecosystem-model, ecosystem-science, meta-analysis, national-science-foundation, pecan, plants, agriculture, crops and 59 more

Chris Black [email protected]

OST Projects: 6
Categories: Biosphere, Natural Resources, Renewable Energy
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution, Bioenergy, Ecological and Environmental Modeling, Forest Observation and Management, Plants and Vegetation, Soil and Land
Topics: Functional Structural Plant model, Nutrient uptake, Plant biology, Root architecture, SimRoot, cyberinfrastructure, data-assimilation, ecosystem-model, ecosystem-science, meta-analysis and 20 more

Eric R. Scott [email protected]

OST Projects: 5
Categories: Biosphere, Climate Change, Consumption, Sustainable Development
Sub Categories: Biodiversity and Species Distribution, Climate Data Access and Visualization, Computation and Communication, Ecological and Environmental Modeling, Education, Plants and Vegetation
Topics: cyberinfrastructure, data-assimilation, ecosystem-model, ecosystem-science, meta-analysis, national-science-foundation, pecan, plants, national-phenology-network, phenology and 31 more

Koen Hufkens [email protected]

OST Projects: 4
Categories: Biosphere, Climate Change, Cryosphere
Sub Categories: Climate Data Processing and Analysis, Plants and Vegetation, Snow and Permafrost, Terrestrial Animals, Terrestrial Wildlife
Topics: phenocam, phenocam-data, phenology-modelling, climate-data, data-retrieval, precipitation-data, snotel, snow, daymet, gridded-data and 11 more

Dirk Eddelbuettel [email protected]

OST Projects: 4
Categories: Biosphere, Hydrosphere
Sub Categories: Forest Modeling and Analysis, Forest Observation and Management, Forest Remote Sensing, Ocean and Hydrology Data Access, Plants and Vegetation
Topics: oceanography, abundance, demography, dynamic, dynamics, ecology, fgeo, forestgeo, forests, habitat and 118 more

Rafael Schouten [email protected]

OST Projects: 4
Categories: Biosphere, Consumption
Sub Categories: Agriculture and Nutrition, Biodiversity and Species Distribution, Ecological and Environmental Modeling, Plants and Vegetation, Species Distribution Modeling
Topics: bioclim, biodiversity, biogeography, chelsa, earthenv, ecology, species-distribution-models, demography, dynamic, evolution and 67 more

Jeremy Kemball [email protected]

OST Projects: 3
Categories: Biosphere, Renewable Energy
Sub Categories: Biodiversity and Species Distribution, Bioenergy, Ecological and Environmental Modeling, Plants and Vegetation
Topics: cyberinfrastructure, data-assimilation, ecosystem-model, ecosystem-science, meta-analysis, national-science-foundation, pecan, plants, agriculture, crops and 3 more

John Wilshire [email protected]

OST Projects: 3
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity and Species Distribution, Conservation and Restoration, Plants and Vegetation
Topics: demography, dynamic, ecology, evolution, forests, plant-physiology, science-research, trait, arcgisjs, biodiversity and 1 more

Elchin [email protected]

OST Projects: 3
Categories: Biosphere, Cryosphere, Hydrosphere
Sub Categories: Freshwater and Hydrology, Plants and Vegetation, Snow and Permafrost
Topics: carbon-cycling, ecosystem-modeling, fire-dynamics, permafrost-dynamics, soil-thermal-dynamics, vegetation-dynamics, bmi, csdms, permafrost

Koen Hufkens [email protected]

OST Projects: 3
Categories: Biosphere, Climate Change
Sub Categories: Climate Data Processing and Analysis, Plants and Vegetation, Terrestrial Animals, Terrestrial Wildlife
Topics: phenocam, phenocam-data, phenology-modelling, climate-data, daymet, gridded-data, ornl-daac, model-calibration, phenology-models, vegetation-phenology and 4 more

Rich FitzJohn [email protected]

OST Projects: 3
Categories: Biosphere, Sustainable Development
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity and Species Distribution, Education, Plants and Vegetation
Topics: demography, dynamic, ecology, evolution, forests, plant-physiology, science-research, trait, ecological-modelling, ordination and 27 more

Bruce Wilson [email protected]

OST Projects: 3
Categories: Biosphere, Sustainable Development
Sub Categories: Data Catalogs and Interfaces, Education, Plants and Vegetation
Topics: hut23, hut23-240, aboveground-biomass, altimetry, canopy-metrics, gedi

barnabywalker [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics:

bmaitner [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Conservation and Restoration, Plants and Vegetation
Topics: bien, biodiversity, botanical, ecology, open-science, phylogeny, plant, range-maps, traits, ecological-metadata-language and 8 more

Noah Fahlgren [email protected]

OST Projects: 2
Categories: Biosphere, Consumption
Sub Categories: Agriculture and Nutrition, Plants and Vegetation
Topics: bioinformatics, image-analysis, plant-phenotyping, plantcv, hyperspectral-image-analysis, conda, package-management

stineb [email protected]

OST Projects: 2
Categories: Biosphere, Sustainable Development
Sub Categories: Curated Lists, Plants and Vegetation
Topics: dgvm, growth, p-model, vegetation-dynamics

Tobey Carman [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Ecological and Environmental Modeling, Plants and Vegetation
Topics: cyberinfrastructure, data-assimilation, ecosystem-model, ecosystem-science, meta-analysis, national-science-foundation, pecan, plants, carbon-cycling, ecosystem-modeling and 4 more

Tobey Carman [email protected]

Nicky Nicolson [email protected]

OST Projects: 2
Categories: Biosphere, Sustainable Development
Sub Categories: Education, Plants and Vegetation
Topics: carpentries, data-carpentry, data-wrangling, ecology, english, lesson, stable, biodiversity-informatics, obsidian

Benjamin Stocker [email protected]

OST Projects: 2
Categories: Biosphere, Sustainable Development
Sub Categories: Curated Lists, Plants and Vegetation
Topics: dgvm, growth, p-model, vegetation-dynamics, fluxnet, modis-data, acclimation, optimality-theory, photosynthesis, ameriflux and 4 more

Fengming Yuan [email protected]

OST Projects: 2
Categories: Biosphere, Hydrosphere
Sub Categories: Freshwater and Hydrology, Plants and Vegetation
Topics: carbon-cycling, ecosystem-modeling, fire-dynamics, permafrost-dynamics, soil-thermal-dynamics, vegetation-dynamics, e3sm-model, ngee-arctic, petsc, pflotran

Deepak Jaiswal [email protected]

Fernando Miguez [email protected]

OST Projects: 2
Categories: Biosphere, Renewable Energy
Sub Categories: Photovoltaics and Solar Energy, Plants and Vegetation
Topics: agroclimatology, agroclimatology-data, data-access, earth-science, nasa-power, weather, weather-data, weather-variables, agricultural, ecology and 4 more

J.Gao [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics: jags, land-surface-modeling, land-surface-phenology, phenology, model-calibration, phenocam, phenology-models, vegetation-phenology

stineb [email protected]

Robert Nuske [email protected]

OST Projects: 2
Categories: Biosphere, Natural Resources
Sub Categories: Plants and Vegetation, Soil and Land
Topics: evapotranspiration, waterbalance, waterflux, dwd, growing-season, vegetation-period, grass-gis, grass-gis-addons, addons, extensions and 5 more

justinmcgrath [email protected]

Pepa Aran Paredes [email protected]

OST Projects: 2
Categories: Biosphere, Sustainable Development
Sub Categories: Curated Lists, Plants and Vegetation
Topics: dgvm, growth, p-model, vegetation-dynamics

jk00kg [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics:

scelmendorf [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics: model-calibration, phenocam, phenology-models, vegetation-phenology, data-skills, ecology, neon

Haley Schuhl [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics: bioinformatics, image-analysis, plant-phenotyping, plantcv

Daniel Leitner [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics:

m-giraud [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics:

Sax [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics: bioinformatics, image-analysis, plant-phenotyping, plantcv

jouke jouke@IBG2095

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management, Plants and Vegetation
Topics: Functional Structural Plant model, Nutrient uptake, Plant biology, Root architecture, SimRoot