dvm-dos-tem

A process based Dynamic Vegetation, Dynamic Organic Soil, Terrestrial Ecosystem Model.
https://github.com/uaf-arctic-eco-modeling/dvm-dos-tem

Category: Biosphere
Sub Category: Plants and Vegetation

Keywords

arctic boreal carbon carbon-cycling cryosphere ecosystem-modeling fire-dynamics permafrost permafrost-dynamics soil-thermal-dynamics terrestrial-ecosystem-modeling vegetation-dynamics

Keywords from Contributors

transforms archiving measur ecosystem-model conversion animals plants observation compose projection

Last synced: about 8 hours ago
JSON representation

Repository metadata

A process based Dynamic Vegetation, Dynamic Organic Soil, Terrestrial Ecosystem Model.

• Host: GitHub
• URL: https://github.com/uaf-arctic-eco-modeling/dvm-dos-tem
• Owner: uaf-arctic-eco-modeling
• License: mit
• Created: 2012-06-07T01:26:42.000Z (about 13 years ago)
• Default Branch: master
• Last Pushed: 2025-06-26T21:09:49.000Z (15 days ago)
• Last Synced: 2025-06-29T22:03:58.772Z (12 days ago)
• Topics: arctic, boreal, carbon, carbon-cycling, cryosphere, ecosystem-modeling, fire-dynamics, permafrost, permafrost-dynamics, soil-thermal-dynamics, terrestrial-ecosystem-modeling, vegetation-dynamics
• Language: C++
• Homepage: http://uaf-arctic-eco-modeling.github.io/dvm-dos-tem/
• Size: 157 MB
• Stars: 23
• Watchers: 13
• Forks: 24
• Open Issues: 136
• Releases: 13
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff

README.md

$ git clone https://github.com/uaf-arctic-eco-modeling/dvm-dos-tem.git
$ cd dvm-dos-tem

$ mkdir -p /home/whoever/my-stuff/input
$ mkdir -p /home/whoever/my-stuff/workflows

$ ./docker-build-wrapper.sh cpp-dev
$ ./docker-build-wrapper.sh dev

$ echo "DDT_INPUT_CATALOG=/home/whoever/my-stuff/input" >> .env
$ echo "DDT_WORKFLOWS=/home/whoever/my-stuff/workflows" >> .env
$ echo "V_TAG=$(git describe)" >> .env

$ docker compose up -d dvmdostem-dev

$ docker compose exec dvmdostem-dev bash

develop@56ef79004e31:/work$ make

devleop@56ef79004e31:/work$ setup_working_directory.py --input-data-path demo-data /data/workflows/sample_run
devleop@56ef79004e31:/work$ cd /data/workflows/sample_run

develop@56ef79004e31:/data/workflows/sample_run$ ./dvmdostem --log-level monitor -p 100 -e 1000 -s 250 -t 115 -n 85

develop@56ef79004e31:/data/workflows/sample_run$ /work/scripts/viewers/plot_output_var.py --yx 0 0 --file output/GPP_yearly_tr.nc

Citation (CITATION.cff)

cff-version: 1.2.0
title: "DVMDOSTEM"

message: "If you use this software, please cite using the metadata in this file."
type: software

identifiers:
  - description: "The Zenodo concept DOI of DVMDOSTEM. Use the Concept DOI representing all versions in citations when it is desirable to cite an evolving research artifact, without being specific about the version."
    type: doi
    value: 10.5281/zenodo.4281497

  - description: "The GitHub release URL."
    type: url
    value: "https://github.com/uaf-arctic-eco-modeling/dvm-dos-tem/releases/tag/v0.8.3"

repository-code: "https://uaf-arctic-eco-modeling/dvm-dos-tem"
url: >-
  https://uaf-arctic-eco-modeling.github.io/dvm-dos-tem/index.html#
abstract: >-
  DVMDOSTEM is an advanced process-based terrestrial
  ecosystem model (TEM) designed to study ecosystem responses to climate changes
  and disturbances. It has a particular focus on permafrost regions (i.e. regions
  characterized by soils that stay partially frozen all year round for at
  least two consecutive years), encompassing boreal, arctic, and alpine landscapes.
keywords:
  - C++
  - Python
  - Ecology
  - Terrestrial Ecology
  - Arctic
  - Boreal
  - Permafrost
  - Cryosphere
  - Tundra
license: MIT
authors:
  - family-names: "Genet" # Wildfire, calibration, scientific direction, 
    given-names: "Hélène"
    orcid: "https://orcid.org/0000-0003-4537-9563"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Euskirchen" # DVM, scientific direction
    given-names: "Eugénie"
    orcid: "https://orcid.org/0000-0002-0848-4295"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "McGuire" # TEM, scientific direction
    given-names: "A. D."
    orcid: "https://orcid.org/0000-0003-4646-0750"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Carman" # Software development and maintenance
    given-names: "Tobey B."
    orcid: "https://orcid.org/0000-0003-4617-4674"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Rutter" # Software development and maintenance
    given-names: "Ruth A."
    orcid: "https://orcid.org/0009-0009-7043-6081"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Clein" # Calibration
    given-names: "Joy"
    orcid: "https://orcid.org/0000-0002-2816-5312"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Yuan" # Merging DVM, DOS, and TEM
    given-names: "Fengming"
    orcid: "https://orcid.org/0000-0003-0910-5231"
    affiliation: "Environmental Science Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN 37831"

  - family-names: "Jafarov" # Calibration
    given-names: "Elchin"
    affiliation: "Woodwell Climate Research Center, Falmouth 02540, Massachusetts, USA"
    orcid: "https://orcid.org/0000-0002-8310-3261"

  - family-names: "Yi" # DOS
    given-names: "Shuhua"
    orcid: "https://orcid.org/0000-0003-4932-8237"
    affiliation: "Laboratory of Herbage Improvement And Agro-ecosystem, Lanzhou University, Lanzhou 730000, Gansu Province, P.R. China"

  - family-names: "Zhuang" # TEM
    given-names: "Qianlai"
    orcid: "https://orcid.org/0000-0002-4536-9851"
    affiliation: "Department of Earth, Atmospheric, and Planetary Science, Purdue University, West Lafayette IN 47907 USA"

Owner metadata

• Name: uaf-arctic-eco-modeling
• Login: uaf-arctic-eco-modeling
• Email:
• Kind: organization
• Description:
• Website:
• Location:
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/115209183?v=4
• Repositories: 6
• Last ynced at: 2024-03-26T13:56:16.427Z
• Profile URL: https://github.com/uaf-arctic-eco-modeling

GitHub Events

Total

• Create event: 31
• Release event: 3
• Issues event: 22
• Watch event: 1
• Delete event: 21
• Issue comment event: 46
• Push event: 145
• Pull request review event: 2
• Pull request event: 48

Last Year

• Create event: 31
• Release event: 3
• Issues event: 22
• Watch event: 1
• Delete event: 21
• Issue comment event: 46
• Push event: 145
• Pull request review event: 2
• Pull request event: 48

Committers metadata

Last synced: 7 days ago

Committer domains:

• alaska.edu: 7
• localhost.localdomain: 3
• woodwellclimate.org: 3
• wrd45ddf152b71.id.add.cardiff.ac.uk: 1
• tem-instance-01.c.savvy-nature-341718.internal: 1
• yuan-office.sel.uaf.edu: 1
• mis7490.whrc.ad: 1
• instance-4.c.voltaic-abbey-331604.internal: 1
• alecbennett.com: 1
• bnl.gov: 1
• savages5510.whrc.ad: 1

Issue and Pull Request metadata

Last synced: 3 days ago

Package metadata

• Total packages: 1
• Total downloads: unknown
• Total dependent packages: 0
• Total dependent repositories: 0
• Total versions: 26

Dependencies

Score: -Infinity