dvm-dos-tem

A process based Dynamic Vegetation, Dynamic Organic Soil, Terrestrial Ecosystem Model.
https://github.com/uaf-arctic-eco-modeling/dvm-dos-tem

Category: Biosphere
Sub Category: Plants and Vegetation

Keywords

arctic boreal carbon carbon-cycling cryosphere ecosystem-modeling fire-dynamics permafrost permafrost-dynamics soil-thermal-dynamics terrestrial-ecosystem-modeling vegetation-dynamics

Keywords from Contributors

transforms measur archiving ecosystem-model conversion observation compose plants optimize projection

Last synced: about 16 hours ago
JSON representation

Repository metadata

A process based Dynamic Vegetation, Dynamic Organic Soil, Terrestrial Ecosystem Model.

• Host: GitHub
• URL: https://github.com/uaf-arctic-eco-modeling/dvm-dos-tem
• Owner: uaf-arctic-eco-modeling
• License: mit
• Created: 2012-06-07T01:26:42.000Z (about 13 years ago)
• Default Branch: master
• Last Pushed: 2025-05-31T05:10:35.000Z (8 days ago)
• Last Synced: 2025-05-31T17:56:02.459Z (7 days ago)
• Topics: arctic, boreal, carbon, carbon-cycling, cryosphere, ecosystem-modeling, fire-dynamics, permafrost, permafrost-dynamics, soil-thermal-dynamics, terrestrial-ecosystem-modeling, vegetation-dynamics
• Language: C++
• Homepage: http://uaf-arctic-eco-modeling.github.io/dvm-dos-tem/
• Size: 157 MB
• Stars: 22
• Watchers: 13
• Forks: 24
• Open Issues: 138
• Releases: 11
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff

README.md

$ git clone https://github.com/uaf-arctic-eco-modeling/dvm-dos-tem.git
$ cd dvm-dos-tem

$ mkdir -p /home/whoever/my-stuff/input
$ mkdir -p /home/whoever/my-stuff/workflows

$ ./docker-build-wrapper.sh cpp-dev
$ ./docker-build-wrapper.sh dev

$ echo "DDT_INPUT_CATALOG=/home/whoever/my-stuff/input" >> .env
$ echo "DDT_WORKFLOWS=/home/whoever/my-stuff/workflows" >> .env
$ echo "V_TAG=$(git describe)" >> .env

$ docker compose up -d dvmdostem-dev

$ docker compose exec dvmdostem-dev bash

develop@56ef79004e31:/work$ make

devleop@56ef79004e31:/work$ setup_working_directory.py --input-data-path demo-data /data/workflows/sample_run
devleop@56ef79004e31:/work$ cd /data/workflows/sample_run

develop@56ef79004e31:/data/workflows/sample_run$ ./dvmdostem --log-level monitor -p 100 -e 1000 -s 250 -t 115 -n 85

develop@56ef79004e31:/data/workflows/sample_run$ /work/scripts/viewers/plot_output_var.py --yx 0 0 --file output/GPP_yearly_tr.nc

Citation (CITATION.cff)

# cff-version: 1.2.0
title: "DVMDOSTEM"

message: >-
  If you use this software, please cite it using the
  metadata from this file.
type: software
identifiers:
  - type: doi
    value: 10.5281/zenodo.4281497
    description: "Latest release of DVMDOSTEM software"
repository-code: "https://uaf-arctic-eco-modeling/dvm-dos-tem"
url: >-
  https://uaf-arctic-eco-modeling.github.io/dvm-dos-tem/index.html#
abstract: >-
  `DVMDOSTEM` is an advanced process-based terrestrial
  ecosystem model (TEM) designed to study ecosystem responses to climate changes
  and disturbances. It has a particular focus on permafrost regions (i.e. regions
  characterized by soils that stay partially frozen all year round for at
  least two consecutive years), encompassing boreal, arctic, and alpine landscapes.
keywords:
  - C++
  - Python
  - Ecology
  - Terrestrial Ecology
  - Arctic
  - Boreal
  - Permafrost
  - Cryosphere
  - Tundra
license: MIT
authors:
  - family-names: "Carman"
    given-names: "Tobey B"
    orcid: "https://orcid.org/0000-0003-4617-4674"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Genet"
    given-names: "Hélène"
    orcid: "https://orcid.org/0000-0003-4537-9563"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Rutter"
    given-names: "Ruth A"
    orcid: "https://orcid.org/0009-0009-7043-6081"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Jafarov"
    given-names: "Elchin"
    orcid: "https://orcid.org/0000-0002-8310-3261"
    affiliation: "Woodwell Climate Research Center, Falmouth 02540, Massachusetts, USA"

  - family-names: "Euskirchen"
    given-names: "Eugénie"
    orcid: "https://orcid.org/0000-0002-0848-4295"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Maglio"
    given-names: "Ben"
    orcid: "https://orcid.org/0000-0002-1948-0177"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Clein"
    given-names: "Joy"
    orcid: "https://orcid.org/0000-0002-2816-5312"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Briones"
    given-names: "Valeria"
    orcid: "https://orcid.org/0000-0002-5649-851X"
    affiliation: "Woodwell Climate Research Center, Falmouth 02540, Massachusetts, USA"

  - family-names: "Mullen"
    given-names: "Andrew L"
    orcid: "https://orcid.org/0000-0002-9127-9996"
    affiliation: "Woodwell Climate Research Center, Falmouth 02540, Massachusetts, USA"

  - family-names: "Greaves"
    given-names: "Heather"
    orcid: "https://orcid.org/0000-0002-8800-019X"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "McGuire"
    given-names: "A. D."
    orcid: "https://orcid.org/0000-0003-4646-0750"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Yuan"
    given-names: "Fengming"
    orcid: "https://orcid.org/0000-0003-0910-5231"
    affiliation: "Environmental Science Division and Climate Change Science Institute, Oak Ridge National Laboratory, Oak Ridge, TN 37831"

  - family-names: "Chang"
    given-names: "Chu-Chun"
    orcid: "https://orcid.org/0000-0002-2971-2349"
    affiliation: "Woodwell Climate Research Center, Falmouth 02540, Massachusetts, USA"

  - family-names: "Rady"
    given-names: "Joshua M."
    orcid: "https://orcid.org/0000-0002-7806-136X"
    affiliation: "Woodwell Climate Research Center, Falmouth 02540, Massachusetts, USA"

  - family-names: "Teber"
    given-names: "Doğukan"
    affiliation: "Woodwell Climate Research Center, Falmouth 02540, Massachusetts, USA"

  - family-names: "Rogers"
    given-names: "Brendan M"
    orcid: "https://orcid.org/0000-0001-6711-8466"
    affiliation: "Woodwell Climate Research Center, Falmouth 02540, Massachusetts, USA"

  - family-names: "Smith"
    given-names: "Trevor"
    affiliation: "Woodwell Climate Research Center, Falmouth 02540, Massachusetts, USA"

  - family-names: "Mevenkamp"
    given-names: "Hannah"
    orcid: "https://orcid.org/0000-0002-7241-5374"
    affiliation: "Institute of Arctic Biology, University of Alaska Fairbanks, Fairbanks 99775, Alaska, USA"

  - family-names: "Lara"
    given-names: "Mark J"
    orcid: "https://orcid.org/0000-0002-4670-7031"
    affiliation: "Department(s) of Plant Biology and Geography, University of Illinois Urbana-Champaign, Urbana, IL 61801"

  - family-names: "Zhuang"
    given-names: "Qianlai"
    orcid: "https://orcid.org/0000-0002-4536-9851"
    affiliation: "Department of Earth, Atmospheric, and Planetary Science, Purdue University, West Lafayette IN 47907 USA"

  - family-names: "Yi"
    given-names: "Shuhua"
    affiliation: "School of Geographic Sciences, Nantong University, Nantong Jiangsu, 226019 P.R. China"

Owner metadata

• Name: uaf-arctic-eco-modeling
• Login: uaf-arctic-eco-modeling
• Email:
• Kind: organization
• Description:
• Website:
• Location:
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/115209183?v=4
• Repositories: 6
• Last ynced at: 2024-03-26T13:56:16.427Z
• Profile URL: https://github.com/uaf-arctic-eco-modeling

GitHub Events

Total

• Create event: 29
• Release event: 1
• Issues event: 21
• Watch event: 1
• Delete event: 17
• Issue comment event: 45
• Push event: 135
• Pull request review event: 2
• Pull request event: 43

Last Year

• Create event: 29
• Release event: 1
• Issues event: 21
• Watch event: 1
• Delete event: 17
• Issue comment event: 45
• Push event: 135
• Pull request review event: 2
• Pull request event: 43

Committers metadata

Last synced: 11 days ago

Committer domains:

• alaska.edu: 7
• localhost.localdomain: 3
• woodwellclimate.org: 3
• wrd45ddf152b71.id.add.cardiff.ac.uk: 1
• tem-instance-01.c.savvy-nature-341718.internal: 1
• yuan-office.sel.uaf.edu: 1
• mis7490.whrc.ad: 1
• instance-4.c.voltaic-abbey-331604.internal: 1
• alecbennett.com: 1
• bnl.gov: 1
• savages5510.whrc.ad: 1

Issue and Pull Request metadata

Last synced: 1 day ago

Package metadata

• Total packages: 1
• Total downloads: unknown
• Total dependent packages: 0
• Total dependent repositories: 0
• Total versions: 24

Dependencies

Score: -Infinity