Contributors: Jeroen Ooms
Name: Jeroen Ooms
Login: jeroen
Email: [email protected]
Description: Staff research engineer for @ropensci
Location: Utrecht
Twitter: opencpu
Company: Berkeley Institute for Data Science
Repositories count: 372
Last synced at: 2024-06-11T15:33:58.067Z
Total stars: 2036
Followers: 1765
Following: 371
OST Projects: 33
Languages: R, HTML, C++
Categories: Atmosphere, Biosphere, Climate Change, Consumption, Hydrosphere, Natural Resources, Sustainable Development
Sub Categories: Air Quality, Biodiversity Data Access and Management, Biodiversity Data Cleaning and Standardization, Biodiversity and Species Distribution, Biomass, Climate Data Access and Visualization, Climate Data Processing and Analysis, Data Catalogs and Interfaces, Environmental Satellites, Freshwater and Hydrology, Marine Life and Fishery, Meteorological Observation and Forecast, Mobility and Transportation, Natural Hazard and Storm, Ocean and Hydrology Data Access, Plants and Vegetation, Soil and Land, Terrestrial Wildlife, Water Supply, Water Supply and Quality
Topics: cycle, cycling, desire-lines, origin-destination, pubic-transport, route-network, routes, routing, transport-planning, transportation, walking, biodiversity, biology, darwincore, nomenclature, taxize, taxonomy, gbif, lifewatch, oscibio, species, spocc, national-phenology-network, phenology, hurricane, weather, climate, greece, hydrology, hydrometeorology, hydroscope, meteorological-data, meteorological-stations, tidy-data, water-resources, environment-canada, weather-data, weather-downloader, air-pollution, air-pollution-levels, air-quality, defra, gdal, modis, modis-data, modis-land-products, preprocessing, data60uk, grdc, kgclimateclass, mopex, precipitation, sepa, airports, asos, iowa-environment-mesonet, metar, temperature, weather-api, antweb, bison, ebird, ecoengine, idigbio, inaturalist, obis, occurrence, species-occurrence, vertnet, noaa, noaa-data, climate-data, cru, cru-cl2, data-access, diurnal-temperature, elevation, frost, rainfall, relative-humidity, solar-radiation, wind, landscape-ecology, neutral-landscape-model, biological-data, fish, jerico-relevant, marine-biology, marine-species, open-science, ropensci, water, community-ecology, ecology, evolution, marine, fingertips, health, public-health, public-health-england, patents, patentsview, patentsview-api, uspto, cancer-research, endoscopy, gastroenterology, semi-structured-data, analysis-pipeline, assertion-library, assertion-methods, assertions, predicate-functions, highlighting-clusters, overpass, overpass-api, crypto-currency-exchanges, classifier, extractor, monkeylearn, nlp-machine-learning, openbis, pm25, rti-micropem, jstor, text-analysis, drake, makefile, reproducibility, fake-data, faker, osm-data, blastn, genbank, phylogenetics, sequence-alignment, biomart, database-retrieval, ensembl-servers, genome, genome-annotation, genome-retrieval, genomics, meta-analysis, metagenomics, ncbi-genbank, proteome, sequenced-genomes, archiving, dbi, codemeta, json-ld, openssl, sodium, summary-statistics, unconf, unconf17, data-store, git-lfs, pdf-document, tabula, tabular-data, tokenizer, image-manipulation, imagej, tiff-files, tiff-images, heatmap, interactive-visualizations, plotly, dhs, dhs-api, extract, survey-data, extract-metadata, extract-text, pdf-files, tesseract, tika, agent-based-modeling, individual-based-modelling, netlogo, exploratory-data-analysis, missingness, visualisation, bbox, crs, geobuf, geojson, ndgeojson, bounding-boxes, wkt, agilent, environmental-monitoring, hyperspectral-data, hyperspectral-image-analysis, hyperspectral-image-classification, hyperspectral-imaging, laboratory, microplastics, plastic-pollution, soil, nosql, oblique, survival, git-client, libgit2, libgit2-library, hugo, openscience, wellknown, wkb, ozunconf18, sherpa-romeo, ozunconf17, full-text, open-access, scholarly-articles, turf, turfjs, wildlife, critical-care, electronic-health-record, healthcare, intensive-care, unconf16, continuous-integration, deployment, setup, travis-ci, biodiversity-data, landscape, fisheries, ramlegacy, stock-assessment, decision-theory, pomdp, antweb-api, specimen-records, erddap, air, openaq, openaq-api, openaq-data, dendrochronology, forest, forestry, shiny-apps, shinyapp, tree-ring-width, tree-rings, rcpp, rcpparmadillo, sf, darwin-core, spatial-analysis, geos, proj, appsilon, fomantic-ui, rhinoverse, semantic, semantic-components, semantic-ui, shiny, accounting, eda, replication, arrays, dataframes, dense-data, hdfs, s3-storage, sparse-arrays, sparse-data, storage-engine, tiledb, large-matrices, memory-mapped-file, parallel-computing, statistical-methods, icu, icu4c, regexp, string-manipulation, stringi, stringr, text-processing, benchmarking, databases, quantlib, embedded, examples, littler, gnu-gsl, hiredis, redis-client, curl, literate-programming, pandoc, rmarkdown, unit-testing, codecov, coverage, coverage-report, date-time, csv, fwf, parsing, libxml2, package-creation, commonmark, devtools, arrow, mocking, vcr, tidyverse, graphics, testthat, ftp, gopher, imaps, ldap, libcurl, pop3, scp, sftp, transfer-data, transferring-data, user-agent, libssh2, sftp-client, ssh, filesystem, libuv, keyring, ggplot-extension, transition, hms, mit, agrometeo, meteorologia, cites, endangered-species, trade, agricultura, conservation, iucn, iucn-red-list
Contributed Projects
stplanr
A package for sustainable transport planning with R.
cycle cycling desire-lines origin-destination peer-reviewed pubic-transport r r-package route-network routes routing rstats spatial transport transport-planning transportation walking
Consumption - Mobility and Transportation - Last synced: 26 Apr 2025 - Ranking: 21.1
FedData
R package implementing functions to automate downloading geospatial data available from several federated data sources in hydology, soil, climatology, cropland or landcover.
peer-reviewed r r-package rstats
Sustainable Development - Data Catalogs and Interfaces - Last synced: 26 Apr 2025 - Ranking: 18.3
rredlist
An R client for the IUCN Red List of threatened and endangered species.
api-wrapper biodiversity conservation iucn iucn-red-list r r-package rstats taxize
Biosphere - Biodiversity Data Access and Management - Last synced: 26 Apr 2025 - Ranking: 18.0
riem
Allows to get weather data from ASOS airports stations all around the globe.
airports asos iowa-environment-mesonet metar peer-reviewed r r-package rstats temperature weather weather-api
Atmosphere - Meteorological Observation and Forecast - Last synced: 26 Apr 2025 - Ranking: 17.3
hydroscoper
An R interface to the Greek National Data Bank for Hydrometeorological Information.
climate greece hydrology hydrometeorology hydroscope meteorological-data meteorological-stations peer-reviewed r r-package rstats tidy-data time-series water-resources
Hydrosphere - Freshwater and Hydrology - Last synced: 26 Apr 2025 - Ranking: 15.8
getCRUCLdata
Provides functions that automate importing CRU CL v. 2.0 climatology data into R.
climate-data cru cru-cl2 data-access diurnal-temperature elevation frost peer-reviewed r r-package rainfall relative-humidity rstats solar-radiation temperature wind
Climate Change - Climate Data Processing and Analysis - Last synced: 26 Apr 2025 - Ranking: 15.6
CoordinateCleaner
Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.
Biosphere - Biodiversity Data Cleaning and Standardization - Last synced: 26 Apr 2025 - Ranking: 14.6
MODIStsp
An R package for automatic download and preprocessing of MODIS Land Products Time-Series.
gdal modis modis-data modis-land-products peer-reviewed preprocessing r r-package remote-sensing rstats satellite-imagery time-series
Sustainable Development - Environmental Satellites - Last synced: 26 Apr 2025 - Ranking: 13.9
taxize
Allows users to search over many taxonomic data sources for species names (scientific and common) and download up and downstream taxonomic hierarchical information.
api api-wrapper biodiversity biology darwincore data nomenclature r r-package rstats taxize taxonomy
Biosphere - Biodiversity Data Access and Management - Last synced: 26 Apr 2025 - Ranking: 11.0
rcites
An R package to access information from the Speciesplus database, a centralised portal to key information on species of global concern.
api-client cites database endangered-species r r-package rstats trade
Biosphere - Terrestrial Wildlife - Last synced: 27 Apr 2025 - Ranking: 10.7
icesDatras
R interface to Database of Trawl Surveys web services.
Biosphere - Marine Life and Fishery - Last synced: 26 Apr 2025 - Ranking: 10.5
spocc
An R package to query and collect species occurrence data from many sources.
antweb api bison data ebird ecoengine gbif idigbio inaturalist obis occurrence r r-package rstats species species-occurrence spocc vertnet
Biosphere - Biodiversity Data Access and Management - Last synced: 26 Apr 2025 - Ranking: 7.7
weathercan
This package makes it easier to search for and download multiple months/years of historical weather data from the Environment and Climate Change Canada (ECCC) website.
environment-canada peer-reviewed r r-package rstats weather-data weather-downloader
Atmosphere - Meteorological Observation and Forecast - Last synced: 26 Apr 2025 - Ranking: 7.7
NLMR
R package to simulate neutral landscape models.
landscape-ecology neutral-landscape-model peer-reviewed r r-package rstats spatial
Natural Resources - Soil and Land - Last synced: 26 Apr 2025 - Ranking: 7.2
worrms
A R client for the World Register of Marine Species.
api-wrapper biological-data biology fish jerico-relevant marine-biology marine-species r r-package rstats taxize taxonomy
Biosphere - Marine Life and Fishery - Last synced: 26 Apr 2025 - Ranking: 6.8
hddtools
An open source project designed to facilitate access to a variety of online open data sources relevant for hydrologists and, in general, environmental scientists and practitioners.
data60uk grdc hydrology kgclimateclass mopex peer-reviewed precipitation r r-package rstats sepa
Hydrosphere - Ocean and Hydrology Data Access - Last synced: 26 Apr 2025 - Ranking: 6.2
allodb
An R package for biomass estimation at extratropical forest plots.
Biosphere - Biomass - Last synced: 26 Apr 2025 - Ranking: 5.9
agroclimatico
A set of functions for calculating hydrological climate indices and statistics from tidy data, including a function for plotting geo-referenced results and mapping information.
Climate Change - Climate Data Processing and Analysis - Last synced: 27 Apr 2025 - Ranking: 5.1
rdefra
Interact with the UK AIR Pollution Database from DEFRA.
air-pollution air-pollution-levels air-quality defra peer-reviewed r r-package rstats uk
Natural Resources - Air Quality - Last synced: 27 Apr 2025 - Ranking: 4.9
CDE
Facilitates searching and download of the Water Framework Directive reporting data for all waterbodies from the EA website.
Natural Resources - Water Supply and Quality - Last synced: 26 Apr 2025 - Ranking: 3.9