PlantCV

Plant phenotyping using computer vision.
https://github.com/danforthcenter/plantcv

Category: Biosphere
Sub Category: Plants and Vegetation

Keywords

bioinformatics image-analysis plant-phenotyping plantcv science

Keywords from Contributors

simulator water composability community gan profiling singularity convolutional-neural-networks preprocess closember

Last synced: 1 day ago
JSON representation

Repository metadata

Plant phenotyping with image analysis

Host: GitHub
URL: https://github.com/danforthcenter/plantcv
Owner: danforthcenter
License: mpl-2.0
Created: 2014-03-14T18:24:23.000Z (over 12 years ago)
Default Branch: main
Last Pushed: 2026-07-13T16:03:48.000Z (11 days ago)
Last Synced: 2026-07-13T16:22:35.603Z (11 days ago)
Topics: bioinformatics, image-analysis, plant-phenotyping, plantcv, science
Language: Python
Homepage:
Size: 611 MB
Stars: 804
Watchers: 46
Forks: 292
Open Issues: 119
Releases: 61
Metadata Files:
- Readme: README.md
- Contributing: docs/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: docs/CODE_OF_CONDUCT.md

PlantCV: Plant phenotyping using computer vision

Please use, cite, and contribute to PlantCV!
If you have questions, please submit them via the
GitHub issues page.
Follow us on twitter @plantcv.

Introduction to PlantCV

PlantCV is an open-source image analysis software package targeted for plant phenotyping. PlantCV provides a common
programming and documentation interface to a collection of image analysis techniques that are integrated from a variety
of source packages and algorithms. PlantCV utilizes a modular architecture that enables flexibility in the design of
analysis workflows and rapid assimilation and integration of new methods. For more information about the project,
links to recorded presentations, and publications using PlantCV, please visit our homepage:
https://plantcv.danforthcenter.org/.

Citing PlantCV

If you use PlantCV, please cite the PlantCV publications
relevant to your work. To see how others have used PlantCV in their research, check out our list of
publications using PlantCV.

Issues with PlantCV

Please file any PlantCV suggestions/issues/bugs via our
GitHub issues page. Please check to see if any related
issues have already been filed.

Contributors

Owner metadata

Name: Donald Danforth Plant Science Center
Login: danforthcenter
Email:
Kind: organization
Description: Our Mission: Improve the Human Condition Through Plant Science
Website: https://danforthcenter.org
Location: St. Louis, MO
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/9678079?v=4
Repositories: 97
Last ynced at: 2024-04-16T01:03:45.399Z
Profile URL: https://github.com/danforthcenter

GitHub Events

Total

Release event: 4
Delete event: 132
Member event: 3
Pull request event: 250
Fork event: 14
Issues event: 143
Watch event: 88
Issue comment event: 244
Push event: 747
Pull request review comment event: 33
Pull request review event: 118
Create event: 142

Last Year

Release event: 2
Delete event: 75
Member event: 2
Pull request event: 118
Fork event: 4
Issues event: 72
Watch event: 26
Issue comment event: 85
Push event: 441
Pull request review event: 51
Pull request review comment event: 22
Create event: 72

Committers metadata

Last synced: 4 days ago

Total Commits: 7,371
Total Committers: 73
Avg Commits per committer: 100.973
Development Distribution Score (DDS): 0.68

Commits in past year: 463
Committers in past year: 7
Avg Commits per committer in past year: 66.143
Development Distribution Score (DDS) in past year: 0.456

Name	Email	Commits
HaleySchuhl	h**l@g**m	2358
Noah Fahlgren	n**n@g**m	2329
Hudanyun Sheng	h**g@g**m	421
maliagehan	m**g@g**m	392
Josh Sumner	5****r	306
JorgeGtz	j**r@g**m	276
KeelyBrown	1****3	201
Dominik Schneider	d**r@w**u	188
allcontributors[bot]	4****]	152
Dominik Schneider	d****h	78
David Peery	6****y	49
natejly	n**y@g**m	48
bganglia	b**2@g**m	45
Bhatt	1****e	44
JoeDuenwald	1****d	44
annacasto	6****o	41
GrantKonkel	7****l	28
Max Feldman	m**n@g**m	25
J. Steen Hoyer	j**r@w**u	20
Katie Murphy	5****1	17
deepsource-autofix[bot]	6****]	15
Alexander Kutschera	a**a@r**m	15
leowlima	l**a@d**g	13
Daalen	t**n@w**l	12
calizarr	c**r@g**m	12
jberry	j**7@y**m	12
sdkenney42	1****2	12
afinit	m**1@g**m	11
Duenwald	j**d@d**g	10
Stylopidae1793	1****3	10
and 43 more...

Committer domains:

Issue and Pull Request metadata

Last synced: 6 days ago

Total issues: 669
Total pull requests: 1,322
Average time to close issues: 6 months
Average time to close pull requests: 30 days
Total issue authors: 173
Total pull request authors: 72
Average comments per issue: 2.95
Average comments per pull request: 1.42
Merged pull request: 1,061
Bot issues: 0
Bot pull requests: 109

Past year issues: 50
Past year pull requests: 139
Past year average time to close issues: 15 days
Past year average time to close pull requests: 20 days
Past year issue authors: 16
Past year pull request authors: 13
Past year average comments per issue: 1.16
Past year average comments per pull request: 1.12
Past year merged pull request: 66
Past year bot issues: 0
Past year bot pull requests: 1

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/danforthcenter/plantcv

Top Issue Authors

HaleySchuhl (115)
nfahlgren (112)
maliagehan (52)
dschneiderch (43)
k034b363 (21)
joshqsumner (20)
AdamDimech (19)
MjBordalo (10)
kmurphy61 (9)
annacasto (9)
AntonSax (6)
EdwinP503 (6)
jshoyer (6)
jdavidpeery (5)
RavinduDharmasena (5)

Top Pull Request Authors

nfahlgren (297)
HaleySchuhl (266)
allcontributors[bot] (96)
joshqsumner (94)
JoeDuenwald (52)
natejly (50)
dschneiderch (44)
k034b363 (40)
DannieSheng (33)
JorgeGtz (29)
zeeuqsze (28)
maliagehan (25)
annacasto (18)
ghernandez-57 (15)
leowlima (13)

Top Issue Labels

new feature (156)
help wanted (134)
enhancement (84)
bug (80)
documentation (48)
update (28)
Epic (22)
bugfix (15)
cleanup (10)
work in progress (9)
testing (7)
morphology-subpackage (3)
contributor (3)
good first issue/PR (2)
ready to review (1)

Top Pull Request Labels

ready to review (571)
enhancement (219)
documentation (198)
update (183)
new feature (174)
bugfix (157)
cleanup (121)
contributor (78)
work in progress (73)
merge in order (29)
testing (24)
Objects class implementation (15)
bug (12)
breaking (7)
good first issue/PR (4)
help wanted (3)
morphology-subpackage (2)
Epic (1)

Package metadata

Total packages: 3
Total downloads:
- pypi: 4,633 last-month
- conda: 53,708 total
Total docker downloads: 162
Total dependent packages: 0 (may contain duplicates)
Total dependent repositories: 25 (may contain duplicates)
Total versions: 101
Total maintainers: 1

pypi.org: plantcv

PlantCV: Plant phenotyping with computer vision

Homepage: https://plantcv.org
Documentation: https://docs.plantcv.org
Licenses: Mozilla Public License 2.0 (MPL 2.0)
Latest release: 4.11.3 (published 13 days ago)
Last Synced: 2026-07-20T08:05:16.755Z (4 days ago)
Versions: 50
Dependent Packages: 0
Dependent Repositories: 25
Downloads: 4,633 Last month
Docker Downloads: 162
Rankings:
- Dependent repos count: 2.899%
- Docker downloads count: 4.316%
- Average: 5.814%
- Downloads: 5.935%
- Dependent packages count: 10.108%
Maintainers (1)
- danforthcenter

proxy.golang.org: github.com/danforthcenter/plantcv

Homepage:
Documentation: https://pkg.go.dev/github.com/danforthcenter/plantcv#section-documentation
Licenses: mpl-2.0
Latest release: v4.11.3+incompatible (published 12 days ago)
Last Synced: 2026-07-20T08:05:20.010Z (4 days ago)
Versions: 39
Dependent Packages: 0
Dependent Repositories: 0
Rankings:
- Dependent packages count: 9.049%
- Average: 9.627%
- Dependent repos count: 10.204%

conda-forge.org: plantcv

Homepage: https://plantcv.org
Licenses: MPL-2.0
Latest release: 3.14.1 (published almost 4 years ago)
Last Synced: 2026-04-01T05:16:19.623Z (4 months ago)
Versions: 12
Dependent Packages: 0
Dependent Repositories: 0
Downloads: 53,708 Total
Rankings:
- Dependent repos count: 34.025%
- Average: 42.6%
- Dependent packages count: 51.175%

Dependencies

Dockerfile docker

jupyter/minimal-notebook latest build

.github/workflows/publish-package.yml actions

actions/checkout main composite
actions/setup-python main composite

.github/workflows/continuous-integration.yml actions

actions/checkout main composite
actions/setup-python main composite
codecov/codecov-action v1 composite

docs/requirements.txt pypi

mkdocs >1

environment.yml pypi

requirements.txt pypi

altair *
dask *
dask-jobqueue *
matplotlib >=1.5
numpy >=1.11
opencv-python *
pandas *
python-dateutil *
scikit-image >=0.19
scikit-learn *
scipy *
statsmodels *
vl-convert-python *
xarray >=2022.11.0

setup.py pypi

Score: 22.09541756786356

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