PlantCV
Plant phenotyping using computer vision.
https://github.com/danforthcenter/plantcv
Category: Biosphere
Sub Category: Plants and Vegetation
Keywords
bioinformatics image-analysis plant-phenotyping plantcv science
Keywords from Contributors
simulator water composability community gan profiling singularity convolutional-neural-networks preprocess closember
Last synced: about 14 hours ago
JSON representation
Repository metadata
Plant phenotyping with image analysis
- Host: GitHub
- URL: https://github.com/danforthcenter/plantcv
- Owner: danforthcenter
- License: mpl-2.0
- Created: 2014-03-14T18:24:23.000Z (about 12 years ago)
- Default Branch: main
- Last Pushed: 2026-05-22T19:11:57.000Z (21 days ago)
- Last Synced: 2026-05-26T03:05:20.488Z (18 days ago)
- Topics: bioinformatics, image-analysis, plant-phenotyping, plantcv, science
- Language: Python
- Homepage:
- Size: 610 MB
- Stars: 795
- Watchers: 46
- Forks: 284
- Open Issues: 132
- Releases: 58
-
Metadata Files:
- Readme: README.md
- Contributing: docs/CONTRIBUTING.md
- License: LICENSE
- Code of conduct: docs/CODE_OF_CONDUCT.md
README.md
PlantCV: Plant phenotyping using computer vision
Please use, cite, and contribute to PlantCV!
If you have questions, please submit them via the
GitHub issues page.
Follow us on twitter @plantcv.
Introduction to PlantCV
PlantCV is an open-source image analysis software package targeted for plant phenotyping. PlantCV provides a common
programming and documentation interface to a collection of image analysis techniques that are integrated from a variety
of source packages and algorithms. PlantCV utilizes a modular architecture that enables flexibility in the design of
analysis workflows and rapid assimilation and integration of new methods. For more information about the project,
links to recorded presentations, and publications using PlantCV, please visit our homepage:
https://plantcv.danforthcenter.org/.
Quick Links
- Documentation
- Interactive Documentation
- Installation Instructions
- Updating/Changelog
- Public Image Datasets
- Contribution Guide
- Code of Conduct
- Downloads
Citing PlantCV
If you use PlantCV, please cite the PlantCV publications
relevant to your work. To see how others have used PlantCV in their research, check out our list of
publications using PlantCV.
Issues with PlantCV
Please file any PlantCV suggestions/issues/bugs via our
GitHub issues page. Please check to see if any related
issues have already been filed.
Contributors
Owner metadata
- Name: Donald Danforth Plant Science Center
- Login: danforthcenter
- Email:
- Kind: organization
- Description: Our Mission: Improve the Human Condition Through Plant Science
- Website: https://danforthcenter.org
- Location: St. Louis, MO
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/9678079?v=4
- Repositories: 97
- Last ynced at: 2024-04-16T01:03:45.399Z
- Profile URL: https://github.com/danforthcenter
GitHub Events
Total
- Release event: 4
- Delete event: 125
- Member event: 3
- Pull request event: 250
- Fork event: 14
- Issues event: 143
- Watch event: 87
- Issue comment event: 244
- Push event: 719
- Pull request review comment event: 31
- Pull request review event: 118
- Create event: 133
Last Year
- Release event: 2
- Delete event: 74
- Member event: 2
- Pull request event: 135
- Fork event: 4
- Issues event: 80
- Watch event: 30
- Issue comment event: 102
- Push event: 450
- Pull request review comment event: 20
- Pull request review event: 58
- Create event: 73
Committers metadata
Last synced: 4 days ago
Total Commits: 7,363
Total Committers: 72
Avg Commits per committer: 102.264
Development Distribution Score (DDS): 0.68
Commits in past year: 539
Committers in past year: 9
Avg Commits per committer in past year: 59.889
Development Distribution Score (DDS) in past year: 0.497
| Name | Commits | |
|---|---|---|
| HaleySchuhl | h****l@g****m | 2358 |
| Noah Fahlgren | n****n@g****m | 2324 |
| Hudanyun Sheng | h****g@g****m | 421 |
| maliagehan | m****g@g****m | 392 |
| Josh Sumner | 5****r | 306 |
| JorgeGtz | j****r@g****m | 276 |
| KeelyBrown | 1****3 | 201 |
| Dominik Schneider | d****r@w****u | 188 |
| allcontributors[bot] | 4****] | 150 |
| Dominik Schneider | d****h | 78 |
| David Peery | 6****y | 49 |
| natejly | n****y@g****m | 48 |
| bganglia | b****2@g****m | 45 |
| Bhatt | 1****e | 44 |
| JoeDuenwald | 1****d | 44 |
| annacasto | 6****o | 41 |
| GrantKonkel | 7****l | 28 |
| Max Feldman | m****n@g****m | 25 |
| J. Steen Hoyer | j****r@w****u | 20 |
| Katie Murphy | 5****1 | 17 |
| deepsource-autofix[bot] | 6****] | 15 |
| Alexander Kutschera | a****a@r****m | 15 |
| leowlima | l****a@d****g | 13 |
| Daalen | t****n@w****l | 12 |
| calizarr | c****r@g****m | 12 |
| jberry | j****7@y****m | 12 |
| sdkenney42 | 1****2 | 12 |
| afinit | m****1@g****m | 11 |
| Duenwald | j****d@d****g | 10 |
| Stylopidae1793 | 1****3 | 10 |
| and 42 more... | ||
Committer domains:
- danforthcenter.org: 9
- wustl.edu: 2
- ddpsc.org: 2
- wsu.edu: 1
- rayngrowingsystems.com: 1
- wur.nl: 1
- ymail.com: 1
- adonline.id.au: 1
- gmx.com: 1
- mst.edu: 1
- fontbonne.edu: 1
- itbhu.ac.in: 1
- e-box3.de: 1
- scarlet.be: 1
- newlogic.com: 1
- msoe.edu: 1
- stargate.datasci.danforthcenter.org: 1
- osx-bioinfo1.ddpsc.org: 1
- serotonin.ai: 1
Issue and Pull Request metadata
Last synced: 4 days ago
Total issues: 662
Total pull requests: 1,298
Average time to close issues: 5 months
Average time to close pull requests: 28 days
Total issue authors: 171
Total pull request authors: 71
Average comments per issue: 2.98
Average comments per pull request: 1.42
Merged pull request: 1,041
Bot issues: 0
Bot pull requests: 108
Past year issues: 50
Past year pull requests: 139
Past year average time to close issues: 20 days
Past year average time to close pull requests: 12 days
Past year issue authors: 16
Past year pull request authors: 14
Past year average comments per issue: 1.22
Past year average comments per pull request: 1.04
Past year merged pull request: 60
Past year bot issues: 0
Past year bot pull requests: 3
Top Issue Authors
- HaleySchuhl (115)
- nfahlgren (112)
- maliagehan (52)
- dschneiderch (43)
- k034b363 (21)
- AdamDimech (19)
- joshqsumner (17)
- MjBordalo (10)
- kmurphy61 (9)
- annacasto (9)
- AntonSax (6)
- EdwinP503 (6)
- jshoyer (6)
- RavinduDharmasena (5)
- jdavidpeery (5)
Top Pull Request Authors
- nfahlgren (289)
- HaleySchuhl (266)
- allcontributors[bot] (95)
- joshqsumner (82)
- JoeDuenwald (52)
- natejly (50)
- dschneiderch (44)
- k034b363 (40)
- DannieSheng (33)
- JorgeGtz (29)
- zeeuqsze (28)
- maliagehan (25)
- annacasto (18)
- ghernandez-57 (15)
- leowlima (13)
Top Issue Labels
- new feature (156)
- help wanted (131)
- enhancement (84)
- bug (78)
- documentation (46)
- update (28)
- Epic (22)
- bugfix (15)
- cleanup (10)
- work in progress (9)
- testing (7)
- morphology-subpackage (3)
- contributor (3)
- good first issue/PR (1)
- ready to review (1)
Top Pull Request Labels
- ready to review (550)
- enhancement (213)
- documentation (196)
- update (179)
- new feature (174)
- bugfix (153)
- cleanup (118)
- contributor (77)
- work in progress (73)
- merge in order (27)
- testing (23)
- Objects class implementation (15)
- bug (12)
- breaking (7)
- good first issue/PR (4)
- help wanted (3)
- morphology-subpackage (2)
- Epic (1)
Package metadata
- Total packages: 3
-
Total downloads:
- pypi: 4,446 last-month
- conda: 53,708 total
- Total docker downloads: 162
- Total dependent packages: 0 (may contain duplicates)
- Total dependent repositories: 25 (may contain duplicates)
- Total versions: 95
- Total maintainers: 1
pypi.org: plantcv
PlantCV: Plant phenotyping with computer vision
- Homepage: https://plantcv.org
- Documentation: https://docs.plantcv.org
- Licenses: Mozilla Public License 2.0 (MPL 2.0)
- Latest release: 4.10.2 (published 5 months ago)
- Last Synced: 2026-06-09T13:27:27.812Z (3 days ago)
- Versions: 47
- Dependent Packages: 0
- Dependent Repositories: 25
- Downloads: 4,446 Last month
- Docker Downloads: 162
-
Rankings:
- Dependent repos count: 2.899%
- Docker downloads count: 4.316%
- Average: 5.814%
- Downloads: 5.935%
- Dependent packages count: 10.108%
- Maintainers (1)
proxy.golang.org: github.com/danforthcenter/plantcv
- Homepage:
- Documentation: https://pkg.go.dev/github.com/danforthcenter/plantcv#section-documentation
- Licenses: mpl-2.0
- Latest release: v4.10.2+incompatible (published 4 months ago)
- Last Synced: 2026-06-09T13:27:24.484Z (3 days ago)
- Versions: 36
- Dependent Packages: 0
- Dependent Repositories: 0
-
Rankings:
- Dependent packages count: 9.049%
- Average: 9.627%
- Dependent repos count: 10.204%
conda-forge.org: plantcv
- Homepage: https://plantcv.org
- Licenses: MPL-2.0
- Latest release: 3.14.1 (published almost 4 years ago)
- Last Synced: 2026-04-01T05:16:19.623Z (2 months ago)
- Versions: 12
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 53,708 Total
-
Rankings:
- Dependent repos count: 34.025%
- Average: 42.6%
- Dependent packages count: 51.175%
Dependencies
- jupyter/minimal-notebook latest build
- actions/checkout main composite
- actions/setup-python main composite
- actions/checkout main composite
- actions/setup-python main composite
- codecov/codecov-action v1 composite
- mkdocs >1
- altair *
- dask *
- dask-jobqueue *
- matplotlib >=1.5
- numpy >=1.11
- opencv-python *
- pandas *
- python-dateutil *
- scikit-image >=0.19
- scikit-learn *
- scipy *
- statsmodels *
- vl-convert-python *
- xarray >=2022.11.0
Score: 22.082748628822117