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Open Sustainable Technology

https://github.com/sequana/sequana

'Sequana': a Set of Snakemake NGS pipelines - Published in JOSS (2017)
coverage de-novo ngs pacbio rna-seq sequanix snakemake taxonomy variant-calling
Added: 8 months ago - Last Synced: 8 months ago - Created: March 07, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 5816
  • Committers: 10
  • Issues: 54
  • Pull Requests: 139
  • Owner: sequana
  • Stars: 148
  • Forks: 28
  • Packages: 1
  • Downloads: 864
https://github.com/mbhall88/rasusa

Rasusa: Randomly subsample sequencing reads to a specified coverage - Published in JOSS (2022)
alignment bam bioinformatics coverage downsample fasta fastq genome-analysis random rust subsampling
Added: 8 months ago - Last Synced: 8 months ago - Created: September 26, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Rust
  • Commits: 273
  • Committers: 7
  • Issues: 43
  • Pull Requests: 65
  • Owner: mbhall88
  • Stars: 244
  • Forks: 20
  • Packages: 1
  • Downloads: 18,864
https://github.com/swiss-armed-forces/openburst

openBURST: Real-time air surveillance simulation and analysis for active and passive sensors - Published in JOSS (2024)
air coverage pcl pet radar surveillance
Added: 8 months ago - Last Synced: 8 months ago - Created: June 12, 2024

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 125
  • Committers: 2
  • Issues: 3
  • Pull Requests: 2