https://github.com/afrendeiro/toolkit
A toolkit for NGS analysis with Python
atac-seq
bioinformatics
chip-seq
looper
ngs
ngs-analysis
project-management
pypiper
rna-seq
Added: over 1 year ago - Last Synced: 11 months ago
- Created: May 30, 2017
- Relevant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
- Main Language: Python
- Commits: 680
- Committers: 3
- Issues: 55
- Pull Requests: 14
- Owner: afrendeiro
- Stars: 13
- Forks: 4
- Packages: 1
- Downloads: 137
https://github.com/epigen/dea_limma
A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
atac-seq
bioinformatics
biomedical-data-science
chip-seq
differential-expression-analysis
limma
limma-trend
limma-voom
r
rna-seq
scrna-seq
snakemake
statistics
visualization
volcano-plot
workflow
Added: over 1 year ago - Last Synced: 11 months ago
- Created: August 12, 2022
https://github.com/epigen/spilterlize_integrate
A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.
atac-seq
batch-effect
bioinformatics
biomedical-data-science
chip-seq
count-matrix
dimensionality-reduction
integration
ngs
normalization
pipeline
rna-seq
snakemake
visualization
workflow
Added: over 1 year ago - Last Synced: 11 months ago
- Created: June 28, 2023