https://github.com/epigen/spilterlize_integrate

A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.
https://github.com/epigen/spilterlize_integrate

Keywords

atac-seq batch-effect bioinformatics biomedical-data-science chip-seq count-matrix dimensionality-reduction integration ngs normalization pipeline rna-seq snakemake visualization workflow

Last synced: 11 months ago
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Acceptance Criteria

• Revelant topics? true
• External users? true
• Open source license? true
• Active? true
• Fork? false

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Repository metadata

A Snakemake workflow to split, filter, normalize, integrate and select highly variable features of count matrices resulting from experiments with sequencing readout (e.g., RNA-seq, ATAC-seq, ChIP-seq, Methyl-seq, miRNA-seq,...) including diagnostic visualizations.

• Host: GitHub
• URL: https://github.com/epigen/spilterlize_integrate
• Owner: epigen
• License: mit
• Created: 2023-06-28T15:29:25.000Z (almost 2 years ago)
• Default Branch: main
• Last Pushed: 2024-05-22T10:03:58.000Z (12 months ago)
• Last Synced: 2024-06-02T13:05:41.803Z (11 months ago)
• Topics: atac-seq, batch-effect, bioinformatics, biomedical-data-science, chip-seq, count-matrix, dimensionality-reduction, integration, ngs, normalization, pipeline, rna-seq, snakemake, visualization, workflow
• Language: Python
• Homepage: https://epigen.github.io/spilterlize_integrate/
• Size: 79.1 KB
• Stars: 8
• Watchers: 5
• Forks: 0
• Open Issues: 1
• Releases: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff

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Owner metadata

• Name: Computational Epigenetics
• Login: epigen
• Email:
• Kind: organization
• Description: Computational Epigenetics Research and Software
• Website: http://www.medical-epigenomics.org/
• Location: Vienna, Austria
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/3911278?v=4
• Repositories: 17
• Last ynced at: 2023-03-05T15:22:40.323Z
• Profile URL: https://github.com/epigen

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GitHub Events

Total

• Create event: 3
• Issues event: 13
• Release event: 3
• Watch event: 7
• Issue comment event: 15
• Public event: 1
• Push event: 15

Last Year

• Create event: 3
• Issue comment event: 15
• Issues event: 13
• Public event: 1
• Push event: 15
• Release event: 3
• Watch event: 7

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Committers metadata

Last synced: 11 months ago

Name	Email	Commits
sreichl	r****n@g****m	17
Stephan Reichl	5****l	5

Committer domains:

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Issue and Pull Request metadata

Last synced: over 1 year ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/epigen/spilterlize_integrate

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Score: 2.890371757896165