https://github.com/epigen/dea_limma

A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.
https://github.com/epigen/dea_limma

Keywords

atac-seq bioinformatics biomedical-data-science chip-seq differential-expression-analysis limma limma-trend limma-voom r rna-seq scrna-seq snakemake statistics visualization volcano-plot workflow

Last synced: 11 months ago
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Acceptance Criteria

• Revelant topics? true
• External users? true
• Open source license? true
• Active? true
• Fork? false

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Repository metadata

A Snakemake workflow for performing and visualizing differential expression analyses (DEA) on NGS data powered by the R package limma.

• Host: GitHub
• URL: https://github.com/epigen/dea_limma
• Owner: epigen
• License: mit
• Created: 2022-08-12T10:02:19.000Z (over 2 years ago)
• Default Branch: main
• Last Pushed: 2024-05-27T12:49:25.000Z (12 months ago)
• Last Synced: 2024-05-30T15:06:52.245Z (11 months ago)
• Topics: atac-seq, bioinformatics, biomedical-data-science, chip-seq, differential-expression-analysis, limma, limma-trend, limma-voom, r, rna-seq, scrna-seq, snakemake, statistics, visualization, volcano-plot, workflow
• Language: R
• Homepage: https://epigen.github.io/dea_limma/
• Size: 115 KB
• Stars: 14
• Watchers: 5
• Forks: 0
• Open Issues: 2
• Releases: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE
  • Citation: CITATION.cff

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Owner metadata

• Name: Computational Epigenetics
• Login: epigen
• Email:
• Kind: organization
• Description: Computational Epigenetics Research and Software
• Website: http://www.medical-epigenomics.org/
• Location: Vienna, Austria
• Twitter:
• Company:
• Icon url: https://avatars.githubusercontent.com/u/3911278?v=4
• Repositories: 17
• Last ynced at: 2023-03-05T15:22:40.323Z
• Profile URL: https://github.com/epigen

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GitHub Events

Total

• Create event: 4
• Issues event: 21
• Release event: 5
• Watch event: 11
• Member event: 1
• Issue comment event: 10
• Public event: 1
• Push event: 44

Last Year

• Create event: 1
• Issue comment event: 9
• Issues event: 14
• Push event: 15
• Release event: 1
• Watch event: 8

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Committers metadata

Last synced: over 1 year ago

Name	Email	Commits
sreichl	r****n@g****m	33
Stephan Reichl	5****l	13
Lukas Folkman	l****n@g****m	1

Committer domains:

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Issue and Pull Request metadata

Last synced: over 1 year ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/epigen/dea_limma

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Score: 3.8712010109078907