https://github.com/jlsteenwyk/phykit
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
https://github.com/jlsteenwyk/phykit
Keywords
bioinformatics evolution evolutionary-biology genomics multiple-sequence-alignments phylogenetics phylogenomics python
Keywords from Contributors
systematics transforms measur archiving compose animals optimize generic conversion observation
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
- Host: GitHub
- URL: https://github.com/jlsteenwyk/phykit
- Owner: JLSteenwyk
- License: mit
- Created: 2020-05-12T14:29:24.000Z (almost 5 years ago)
- Default Branch: master
- Last Pushed: 2024-06-03T23:03:13.000Z (11 months ago)
- Last Synced: 2024-06-07T21:19:04.914Z (11 months ago)
- Topics: bioinformatics, evolution, evolutionary-biology, genomics, multiple-sequence-alignments, phylogenetics, phylogenomics, python
- Language: Python
- Homepage: https://jlsteenwyk.com/PhyKIT/
- Size: 17.5 MB
- Stars: 53
- Watchers: 5
- Forks: 7
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Changelog: change_log.txt
- License: LICENSE.md
Owner metadata
- Name: Jacob L. Steenwyk
- Login: JLSteenwyk
- Email:
- Kind: user
- Description: Berkeley Science Fellow and Postdoctoral Scholar. Evolutionary genomics and software development.
- Website: https://jlsteenwyk.com
- Location: Berkeley, CA
- Twitter: JLSteenwyk
- Company: University of California, Berkeley
- Icon url: https://avatars.githubusercontent.com/u/17225603?u=370657f310a69a5facb58b2d8e3a0ef1e7fdd1ac&v=4
- Repositories: 10
- Last ynced at: 2023-03-06T17:39:56.653Z
- Profile URL: https://github.com/JLSteenwyk
GitHub Events
Total
- Create event: 26
- Issues event: 5
- Release event: 16
- Watch event: 42
- Delete event: 11
- Issue comment event: 14
- Public event: 1
- Push event: 198
- Pull request event: 32
- Fork event: 6
Last Year
- Create event: 7
- Delete event: 3
- Fork event: 1
- Issue comment event: 7
- Issues event: 3
- Pull request event: 20
- Push event: 35
- Release event: 3
- Watch event: 10
Committers metadata
Last synced: 11 months ago
Total Commits: 343
Total Committers: 8
Avg Commits per committer: 42.875
Development Distribution Score (DDS): 0.201
Commits in past year: 62
Committers in past year: 2
Avg Commits per committer in past year: 31.0
Development Distribution Score (DDS) in past year: 0.016
| Name | Commits | |
|---|---|---|
| Jacob L. Steenwyk | j****k@g****m | 274 |
| Jacob Steenwyk | j****k@J****t | 32 |
| Thomas Buida | t****a@g****m | 20 |
| Jacob Steenwyk | j****k@J****l | 10 |
| Jacob L Steenwyk | j****k@J****l | 3 |
| dependabot[bot] | 4****] | 2 |
| Jacob L. Steenwyk | j****k@J****y | 1 |
| Jason Stajich | j****d@g****m | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: over 1 year ago
Total issues: 4
Total pull requests: 19
Average time to close issues: 1 day
Average time to close pull requests: 23 days
Total issue authors: 4
Total pull request authors: 4
Average comments per issue: 2.25
Average comments per pull request: 0.47
Merged pull request: 11
Bot issues: 0
Bot pull requests: 9
Past year issues: 2
Past year pull requests: 11
Past year average time to close issues: about 2 hours
Past year average time to close pull requests: 14 days
Past year issue authors: 2
Past year pull request authors: 2
Past year average comments per issue: 2.0
Past year average comments per pull request: 0.27
Past year merged pull request: 8
Past year bot issues: 0
Past year bot pull requests: 3
Top Issue Authors
- hanxiaoxu1110 (1)
- hverbruggen (1)
- TobyBaril (1)
- ymilesz (1)
Top Pull Request Authors
- dependabot[bot] (9)
- JLSteenwyk (8)
- hyphaltip (1)
- TJBIII (1)
Top Issue Labels
Top Pull Request Labels
- dependencies (9)
Package metadata
- Total packages: 1
-
Total downloads:
- pypi: 377 last-month
- Total dependent packages: 0
- Total dependent repositories: 1
- Total versions: 66
- Total maintainers: 1
pypi.org: phykit
- Homepage: https://github.com/jlsteenwyk/phykit
- Documentation: https://phykit.readthedocs.io/
- Licenses: mit
- Latest release: 1.19.4 (published about 1 year ago)
- Last Synced: 2024-06-03T23:17:08.596Z (11 months ago)
- Versions: 66
- Dependent Packages: 0
- Dependent Repositories: 1
- Downloads: 377 Last month
-
Rankings:
- Stargazers count: 9.984%
- Dependent packages count: 10.126%
- Downloads: 12.162%
- Forks count: 13.343%
- Average: 13.43%
- Dependent repos count: 21.535%
- Maintainers (1)
Dependencies
- biopython ==1.76
- scipy ==1.4.1
- biopython ==1.76
- numpy ==1.19.2
- scipy ==1.4.1
- sphinx-autobuild * develop
- Pygments *
- Sphinx *
- sphinx_rtd_theme *
- argh ==0.26.2 develop
- livereload ==2.6.3 develop
- pathtools ==0.1.2 develop
- port-for ==0.3.1 develop
- pyyaml ==5.4 develop
- six ==1.15.0 develop
- sphinx-autobuild ==0.7.1 develop
- tornado ==6.1 develop
- watchdog ==2.0.2 develop
- alabaster ==0.7.12
- babel ==2.9.0
- certifi ==2020.12.5
- chardet ==4.0.0
- docutils ==0.16
- idna ==2.10
- imagesize ==1.2.0
- jinja2 ==2.11.3
- markupsafe ==1.1.1
- packaging ==20.9
- pygments ==2.6.1
- pyparsing ==2.4.7
- pytz ==2021.1
- requests ==2.25.1
- snowballstemmer ==2.1.0
- sphinx ==3.0.2
- sphinx-rtd-theme ==0.4.3
- sphinxcontrib-applehelp ==1.0.2
- sphinxcontrib-devhelp ==1.0.2
- sphinxcontrib-htmlhelp ==1.0.3
- sphinxcontrib-jsmath ==1.0.1
- sphinxcontrib-qthelp ==1.0.3
- sphinxcontrib-serializinghtml ==1.1.4
- urllib3 ==1.26.4
- biopython >=1.76
- cython *
- numpy >=1.18.2
- scipy >=1.4.1
- mock ==2.0.0
- pytest ==4.5.0
- pytest-cov ==2.5.1
- pytest-mock ==1.10.1
- JamesIves/github-pages-deploy-action releases/v3 composite
- actions/checkout master composite
- actions/setup-python master composite
- codecov/codecov-action v1.0.7 composite
- dschep/install-pipenv-action v1 composite
Score: 11.987269660314384