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Open Sustainable Technology

https://github.com/nf-core/bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
bacteria bacterial bacterial-genome-analysis genomics mapping nextflow nf-core phylogeny pipeline tree workflow
Added: over 1 year ago - Last Synced: 11 months ago - Created: June 09, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Nextflow
  • Commits: 225
  • Committers: 8
  • Issues: 25
  • Pull Requests: 42
  • Owner: nf-core
  • Stars: 48
  • Forks: 27
  • Packages: 0
https://github.com/karel-brinda/miniphy

Phylogenetic compression of extremely large genome collections [661k ↘𝟏𝟕.𝟓𝐆𝐁, BIGSIdata ↘𝟓𝟐 𝐆𝐁]
assemblies bacteria bioinformatics compression genomes indexing k-mers mof phylogenetic-compression phylogeny prophyle
Added: over 1 year ago - Last Synced: 11 months ago - Created: July 23, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 293
  • Committers: 3
  • Issues: 53
  • Pull Requests: 51