https://github.com/karel-brinda/miniphy

Phylogenetic compression of extremely large genome collections [661k ↘𝟏𝟕.𝟓𝐆𝐁, BIGSIdata ↘𝟓𝟐 𝐆𝐁]
https://github.com/karel-brinda/miniphy

Keywords

assemblies bacteria bioinformatics compression genomes indexing k-mers mof phylogenetic-compression phylogeny prophyle

Keywords from Contributors

simplitigs

Last synced: about 1 year ago
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Acceptance Criteria

• Revelant topics? true
• External users? true
• Open source license? true
• Active? true
• Fork? false

Repository metadata

Phylogenetic compression of extremely large genome collections [661k ↘𝟏𝟕.𝟓𝐆𝐁, BIGSIdata ↘𝟓𝟐 𝐆𝐁]

• Host: GitHub
• URL: https://github.com/karel-brinda/miniphy
• Owner: karel-brinda
• License: other
• Created: 2021-07-23T16:03:18.000Z (almost 4 years ago)
• Default Branch: main
• Last Pushed: 2024-03-08T21:29:59.000Z (over 1 year ago)
• Last Synced: 2024-03-08T22:32:33.133Z (over 1 year ago)
• Topics: assemblies, bacteria, bioinformatics, compression, genomes, indexing, k-mers, mof, phylogenetic-compression, phylogeny, prophyle
• Language: Python
• Homepage: https://brinda.eu/mof
• Size: 5.85 MB
• Stars: 8
• Watchers: 6
• Forks: 0
• Open Issues: 8
• Releases: 0
• Metadata Files:
  • Readme: README.md
  • License: LICENSE

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Owner metadata

• Name: Karel Břinda
• Login: karel-brinda
• Email:
• Kind: user
• Description: Bioinformatics, Algorithms, Genomics, Pathogens, Rapid Diagnostics, and Antibiotic Resistance
• Website: karel-brinda.github.io
• Location: Rennes, France
• Twitter: karelbrinda
• Company: Inria/IRISA Rennes
• Icon url: https://avatars.githubusercontent.com/u/8779046?u=3ce01e6e17b55ecefe7388e79ae8673c44262182&v=4
• Repositories: 19
• Last ynced at: 2023-02-26T11:55:18.022Z
• Profile URL: https://github.com/karel-brinda

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GitHub Events

Total

• Issues event: 1
• Watch event: 1
• Delete event: 2
• Push event: 7
• Pull request event: 2
• Create event: 2

Last Year

• Create event: 2
• Delete event: 2
• Issues event: 1
• Pull request event: 2
• Push event: 7
• Watch event: 1

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Committers metadata

Last synced: over 1 year ago

Name	Email	Commits
Karel Břinda	k****a@g****m	235
Leandro Ishi	l****a@g****m	57
Karel Břinda	k****a@h****u	1

Committer domains:

• hms.harvard.edu: 1

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Issue and Pull Request metadata

Last synced: over 1 year ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/karel-brinda/miniphy

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Score: 3.8712010109078907