https://github.com/nf-core/bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences
https://github.com/nf-core/bactmap

Keywords

bacteria bacterial bacterial-genome-analysis genomics mapping nextflow nf-core phylogeny pipeline tree workflow

Keywords from Contributors

bioinformatics conda package-management linting

Last synced: 11 months ago
JSON representation

Acceptance Criteria

• Revelant topics? true
• External users? true
• Open source license? true
• Active? true
• Fork? false

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Repository metadata

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

• Host: GitHub
• URL: https://github.com/nf-core/bactmap
• Owner: nf-core
• License: mit
• Created: 2019-06-09T11:11:37.000Z (almost 6 years ago)
• Default Branch: master
• Last Pushed: 2024-05-09T11:38:23.000Z (about 1 year ago)
• Last Synced: 2024-05-18T04:07:32.113Z (12 months ago)
• Topics: bacteria, bacterial, bacterial-genome-analysis, genomics, mapping, nextflow, nf-core, phylogeny, pipeline, tree, workflow
• Language: Nextflow
• Homepage: https://nf-co.re/bactmap
• Size: 72.7 MB
• Stars: 48
• Watchers: 132
• Forks: 27
• Open Issues: 11
• Releases: 0
• Metadata Files:
  • Readme: README.md
  • Changelog: CHANGELOG.md
  • Contributing: .github/CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md
  • Citation: CITATIONS.md

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Owner metadata

• Name: nf-core
• Login: nf-core
• Email: [email protected]
• Kind: organization
• Description: A community effort to collect a curated set of analysis pipelines built using Nextflow.
• Website: http://nf-co.re
• Location:
• Twitter: nf_core
• Company:
• Icon url: https://avatars.githubusercontent.com/u/35520196?v=4
• Repositories: 84
• Last ynced at: 2023-03-01T20:50:19.252Z
• Profile URL: https://github.com/nf-core

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GitHub Events

Total

• Create event: 30
• Release event: 2
• Issues event: 38
• Watch event: 47
• Delete event: 8
• Member event: 1
• Issue comment event: 57
• Push event: 146
• Pull request review event: 50
• Pull request review comment event: 52
• Pull request event: 77
• Fork event: 31

Last Year

• Create event: 5
• Fork event: 7
• Issue comment event: 6
• Pull request event: 11
• Push event: 5
• Watch event: 7

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Committers metadata

Last synced: 12 months ago

Name	Email	Commits
Anthony Underwood	a****3@s****k	154
Harshil Patel	d****h@g****m	32
avantonder	a****t@s****k	20
Alexandre Gilardet	a****t@c****k	6
thanhleviet	t****t@q****k	5
Phil Ewels	p****s@s****e	3
alexandregilardet	6****t	3
Harshil Patel	d****h	2

Committer domains:

• sanger.ac.uk: 2
• scilifelab.se: 1
• quadram.ac.uk: 1
• crick.ac.uk: 1

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Issue and Pull Request metadata

Last synced: over 1 year ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/nf-core/bactmap

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Dependencies

Score: 6.156978985585555