Chris Mungall | Open Sustainable Technology

Contributors: Chris Mungall

Name: Chris Mungall
Login: cmungall
Email: [email protected]
Description: Computer Research Scientist at Berkeley Lab. Interests: AI / Ontologies / Bioinformatics. Projects: GO, Monarch, Alliance, OBOFoundry, NMDC
Website: http://berkeleybop.org/people/chris-mungall
Location: Berkeley, CA
Twitter: chrismungall
Company: Lawrence Berkeley National Laboratory
Repositories count: 350
Last synced at: 2024-06-11T15:35:26.414Z
Total stars: 429
Followers: 325
Following: 39
OST Projects: 8
Languages: Python, Makefile, Java, Turtle
Categories: Biosphere, Hydrosphere, Sustainable Development
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution, Freshwater and Hydrology, Knowledge Platforms, Taxonomy and Ontology
Topics: biodiversity, bioinformatics, biology, diet, diseases, ecoinformatics, ecology, eol, etl-framework, food-webs, globi, parasites, pollinators, species-interactions, earth, earth-science, environment-variables, ontologies, owl, owl-ontology, sweet-ontologies, obofoundry, exposure, health, monarchinitiative, obo, ontology, data-management, esip, planetary-science, semantics, sustainable-development-goals, phenotype, plant-trait-ontology, plant-traits, agriculture, breeds, domestic-animals, fao, linkml, agriculture-research, agronomy, agronomy-ontology, open-science, osf, hpo, odp, templates, gene-ontology, geneontology, graphs, ontology-standards, annotations, functional-annotation, genes, graph-visualization, graphviz, obographs, curies, semantic-web, uris, diffs, kg, knowledge-graph, ontology-change-language, rdf, semantic-diff, biolink, datamodel, json-api, knowledge-graphs, ncats, ncats-translator, neo4j, agroportal, bioportal, cookiecutter-snekpack, ecoportal, ontoportal, ontology-tools, sparql, linked-data, ontobee, rdflib, sparql-templates, ubergraph, genomics, json-schema, metabolomics, microbiome, microbiomedata, mixs, nmdc, proteomics, samples, standards, transcriptomics, boomer, mondo, ontology-merging, probabilistic-owl, reasoning, change-objects, data-modeling, query-language, conversion, instances, linkml-runtime, object-model, deprecated-repo, json-ld, shex, uml, csv, denormalization, json-flattener, spreadsheets, tables, data-dictionaries, json-ld-context, linkml-schema, shacl, biocuration, curation, ontogpt, chat-gpt, gpt-3, information-extraction, language-models, large-language-models, named-entity-recognition, ner, oaklib, relation-extraction, knowledge-extraction, bioregistry, prefixmaps, apis, ontology-api, entity-normalization, mapping-commons, mapping-tools, mappings, ontology-lookup-service, sssom, internationalization, language-translation, relation-graph, obi, etl, koza, anatomy-ontology, brain, brain-data, cell-types, neuroanatomy, neuron, chebi, chemistry, metaclass, ontology-mappings, mapping-standards, metadata-elements, tsv, chromosomes, environmentontology, envo, gaz, wikidata, upper-ontology, cancer, entity-matching, ncit, neoplasm, metamodeling, owl-schema, semweb, aaron-swartz, awesome-public-datasets, opendata, networkx, obo-files, obo-formatted-ontologies, rephetio, annotation, go-cam, noctua, noctua-models, anatomical-knowledge, cell-shapes, chemicals, environments, media, metabolism, microbiology, ncbitaxonomy, phenotypes, robot, traits, design-patterns, json2owl, metaclasses, ontology-design-patterns, ontology-generation, ontology-mapping, tsv2owl, yaml2owl, qc, quality-control, semantic, sweet, plant, terminology, trait, abiotic-stresses, biotic-stresses, plant-stress, continuous-integration, protege, travis, gaf, integrated, phenotyping, mammals, life-sciences, ontology-registry, exposures, plant-treatments, evidence, animal-behaviours, behavioural-phenotypes, neuro-behaviour-ontology, web-ontology-language, qualities, quantities, trait-ontology, units, arrays, hdmf, multidimensional-arrays, zarr, bioperl, perl, dataframes, n3, namespace, nquads, ntriples, pypi, rdf-xml, serializer, turtle, turtle-rdf, uri

Contributed Projects

basin3d

A generalized data synthesis model that applies across a variety of earth science observation types (hydrology, geochemistry, climate etc.).

Hydrosphere - Freshwater and Hydrology - Last synced: 27 Apr 2025 - Ranking: 12.2

ENVO

A community-driven ontology for the representation of environments.

data-management data-science earth-science ecoinformatics ecology environment esip obofoundry ontology planetary-science semantics sustainable-development-goals

Sustainable Development - Taxonomy and Ontology - Last synced: 27 Apr 2025 - Ranking: 10.1

Global Biotic Interactions

Global Biotic Interactions provides access to existing species interaction datasets.

biodiversity bioinformatics biology diet diseases ecoinformatics ecology eol etl-framework food-webs globi parasites pollinators species-interactions

Biosphere - Biodiversity Data Access and Management - Last synced: 27 Apr 2025 - Ranking: 9.2

Plant Trait Ontology

A controlled vocabulary of describe phenotypic traits in plants.

obo obofoundry owl phenotype plant-trait-ontology plant-traits

Sustainable Development - Taxonomy and Ontology - Last synced: 27 Apr 2025 - Ranking: 8.7

FOODON

Provides a neutral and ontology-driven standard for government agencies, industry, nonprofits and consumers to name and reference food products and their components throughout the food supply chain.

agriculture food obofoundry ontology owl

Sustainable Development - Taxonomy and Ontology - Last synced: 27 Apr 2025 - Ranking: 8.0

ECTO

Modular environmental exposures ontology.

environment exposure health monarchinitiative obo obofoundry ontology owl

Sustainable Development - Taxonomy and Ontology - Last synced: 27 Apr 2025 - Ranking: 6.8

ecoCore

A standard vocabulary for the ecological community, a need expressed repeatedly over the past few years at workshops focused on ecological, environmental, and population-based semantics.

obofoundry

Sustainable Development - Taxonomy and Ontology - Last synced: 27 Apr 2025 - Ranking: 5.8