Global Biotic Interactions
Global Biotic Interactions provides access to existing species interaction datasets.
https://github.com/globalbioticinteractions/globalbioticinteractions
Category: Biosphere
Sub Category: Biodiversity Data Access and Management
Keywords
biodiversity bioinformatics biology diet diseases ecoinformatics ecology eol etl-framework food-webs globi parasites pollinators species-interactions
Keywords from Contributors
phenotyping measur transforms animals trait interaction optimize annotation species observation
Last synced: about 18 hours ago
JSON representation
Repository metadata
Global Biotic Interactions provides access to existing species interaction datasets
- Host: GitHub
- URL: https://github.com/globalbioticinteractions/globalbioticinteractions
- Owner: globalbioticinteractions
- License: gpl-3.0
- Created: 2011-09-28T21:51:47.000Z (over 13 years ago)
- Default Branch: main
- Last Pushed: 2025-03-27T23:37:27.000Z (about 1 month ago)
- Last Synced: 2025-04-25T12:46:02.231Z (2 days ago)
- Topics: biodiversity, bioinformatics, biology, diet, diseases, ecoinformatics, ecology, eol, etl-framework, food-webs, globi, parasites, pollinators, species-interactions
- Language: Java
- Homepage: https://globalbioticinteractions.org
- Size: 155 MB
- Stars: 130
- Watchers: 21
- Forks: 16
- Open Issues: 355
- Releases: 167
-
Metadata Files:
- Readme: README.md
- License: LICENSE.txt
README.md
Welcome to Global Biotic Interactions (GloBI)
The mission of this project is to find efficient ways to normalize and integrate species interaction data to enable researchers and enthusiasts to answer questions like: Which species does an Angel Shark ( Squatina squatina ) eat in the Gulf of Mexico?
Please see https://globalbioticinteractions.org or https://github.com/globalbioticinteractions/globalbioticinteractions/wiki for more information.
Citing GloBI
Poelen, J. H., Simons, J. D., & Mungall, C. J. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics, 24, 148–159. doi:10.1016/j.ecoinf.2014.08.005
Licenses
Unless otherwise noted, source code is released under GLPv3 and data is available under Creative Commons Attribution 4.0 International License. We are trying to do the best we can to ensure that the references to the original data sources are preserved and attributed. If you feel that there are better ways to do this, please let us know.
Owner metadata
- Name: globalbioticinteractions
- Login: globalbioticinteractions
- Email:
- Kind: organization
- Description:
- Website: http://globalbioticinteractions.org
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/9599468?v=4
- Repositories: 211
- Last ynced at: 2023-08-04T22:02:10.845Z
- Profile URL: https://github.com/globalbioticinteractions
GitHub Events
Total
- Create event: 14
- Release event: 12
- Issues event: 72
- Watch event: 6
- Issue comment event: 155
- Push event: 103
- Gollum event: 4
- Pull request review event: 1
- Pull request event: 5
- Fork event: 1
Last Year
- Create event: 14
- Release event: 12
- Issues event: 72
- Watch event: 6
- Issue comment event: 155
- Push event: 103
- Gollum event: 4
- Pull request review event: 1
- Pull request event: 5
- Fork event: 1
Committers metadata
Last synced: 6 days ago
Total Commits: 4,685
Total Committers: 21
Avg Commits per committer: 223.095
Development Distribution Score (DDS): 0.505
Commits in past year: 222
Committers in past year: 3
Avg Commits per committer in past year: 74.0
Development Distribution Score (DDS) in past year: 0.009
| Name | Commits | |
|---|---|---|
| Jorrit Poelen | j****n@g****m | 2317 |
| jhpoelen | j****n@x****l | 1770 |
| Jorrit Poelen | j****t@j****l | 494 |
| James Simons | j****s@t****u | 42 |
| reiz | r****z@g****m | 18 |
| Chris Mungall | c****m@b****g | 17 |
| dependabot[bot] | 4****] | 8 |
| jrfep | j****s@g****m | 3 |
| Jonathan Leitschuh | J****h@g****m | 2 |
| José Augusto Salim | z****l | 2 |
| omahs | 7****s | 2 |
| Brian Hayden | b****n@u****a | 1 |
| Jorrit Poelen | 1****n | 1 |
| Katja Seltmann | e****s@g****m | 1 |
| Mariya Dimitrova | m****v@g****m | 1 |
| BrianHayden | b****n@h****i | 1 |
| Shannon VanWagner | v****r@g****m | 1 |
| mdrishti | 4****i | 1 |
| proopnarine | p****e@c****g | 1 |
| reiz | r****1@g****m | 1 |
| tmitchell1 | T****l@t****u | 1 |
Committer domains:
- tamucc.edu: 2
- calacademy.org: 1
- google.com: 1
- helsinki.fi: 1
- unb.ca: 1
- berkeleybop.org: 1
- gmx.com: 1
- jhpoelen.nl: 1
- xs4all.nl: 1
Issue and Pull Request metadata
Last synced: 2 days ago
Total issues: 1,053
Total pull requests: 23
Average time to close issues: 6 months
Average time to close pull requests: 14 days
Total issue authors: 89
Total pull request authors: 9
Average comments per issue: 3.56
Average comments per pull request: 0.74
Merged pull request: 17
Bot issues: 0
Bot pull requests: 13
Past year issues: 91
Past year pull requests: 3
Past year average time to close issues: about 1 month
Past year average time to close pull requests: about 5 hours
Past year issue authors: 14
Past year pull request authors: 2
Past year average comments per issue: 3.87
Past year average comments per pull request: 2.0
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 2
Top Issue Authors
- jhpoelen (805)
- seltmann (42)
- jhammock (30)
- qgroom (13)
- zedomel (7)
- mdrishti (6)
- coding46 (6)
- BarbaraMeulenbelt (6)
- neilcobb (5)
- arw36 (5)
- kbseah (5)
- millerse (4)
- Daniel-Mietchen (4)
- KatjaSchulz (4)
- jemmybutton (3)
Top Pull Request Authors
- dependabot[bot] (13)
- zedomel (2)
- JLLeitschuh (2)
- tmitchell1 (1)
- jhpoelen (1)
- mdrishti (1)
- simatei (1)
- omahs (1)
- shannon-vanwagner (1)
Top Issue Labels
- suggest to index (308)
- new feature (126)
- needs review (67)
- bug (43)
- globi3 (33)
- external issue (24)
- experimental (18)
- non-open data (15)
- needs manual transcription (14)
- optimization (9)
- documentation (5)
- discussion (5)
- needs vocabulary / ontology (5)
- data management (2)
- workaround exists (2)
- needs parser (1)
- behind registration wall (1)
Top Pull Request Labels
- dependencies (13)
Dependencies
- org.eol:eol-globi-neo4j-index 0.24.1-SNAPSHOT
- ${project.groupId}:eol-globi-lib ${project.version}
- ${project.groupId}:eol-globi-resource-remote ${project.version} test
- ${project.groupId}:eol-globi-cache ${project.version}
- ${project.groupId}:eol-globi-jcoord ${project.version}
- com.healthmarketscience.jackcess:jackcess 2.1.6
- com.univocity:univocity-parsers 2.3.0
- org.apache.jena:jena-tdb ${jena.version}
- org.codehaus.swizzle:swizzle-stream 1.6.2
- org.gbif:dwca-io 2.11
- org.jsoup:jsoup 1.14.2
- rome:rome 1.0
- ${project.groupId}:eol-globi-resource-remote ${project.version} test
- org.eol:eol-globi-datasets 1.1-SNAPSHOT
- org.globalbioticinteractions:elton4n 0.24.1-SNAPSHOT
- org.eol:eol-globi-lib 0.6-SNAPSHOT
- org.geotools:gt-shapefile 10.3
- uk.org.mygrid.resources.jcoord:jcoord 1.0
- com.fasterxml.jackson.core:jackson-core ${jackson.version}
- com.fasterxml.jackson.core:jackson-databind ${jackson.version}
- com.vividsolutions:jts 1.13
- joda-time:joda-time 2.10.1
- org.apache.commons:commons-collections4 4.4
- org.apache.commons:commons-text 1.3
- org.eol:eol-globi-resource-local ${project.version}
- org.globalbioticinteractions:doi4j 0.1.0
- org.mapdb:mapdb ${mapdb.version}
- ${project.groupId}:eol-globi-lib ${project.version}
- org.neo4j:neo4j ${neo4j.version}
- org.neo4j:neo4j-slf4j ${neo4j.version}
- ${project.groupId}:eol-globi-data-sources ${project.version}
- ${project.groupId}:eol-globi-neo4j-index-export ${project.version}
- ${project.groupId}:eol-globi-taxon-resolver ${project.version}
- cglib:cglib-nodep 2.2
- commons-cli:commons-cli 1.2
- org.slf4j:slf4j-simple ${slf4j.version}
- org.neo4j.community:it-test-support ${neo4j.version} test
- ${project.groupId}:eol-globi-neo4j ${project.version}
- com.github.dfabulich:sitemapgen4j 1.0.4
- commons-codec:commons-codec ${commons-codec.version}
- junit:junit 4.13.1 test
- org.hamcrest:hamcrest-all 1.3 test
- org.mockito:mockito-core 1.9.0 test
- ${project.groupId}:eol-globi-data-sources ${project.version}
- ${project.groupId}:eol-globi-resource-remote ${project.version}
- ${project.groupId}:eol-globi-resource ${project.version}
- commons-io:commons-io ${commons-io.version}
- org.apache.commons:commons-lang3 ${commons-lang3.version}
- org.ostermiller:utils 1.07.00
- org.slf4j:jcl-over-slf4j ${slf4j.version}
- org.slf4j:slf4j-api ${slf4j.version}
- ${project.groupId}:eol-globi-resource-local ${project.version}
- commons-net:commons-net 3.6
- org.apache.httpcomponents:httpclient ${httpcomponents.version}
- org.apache.httpcomponents:httpmime ${httpcomponents.version}
- javax.mail:mail 1.4 provided
- javax.servlet:servlet-api 2.5 provided
- com.fasterxml.jackson.dataformat:jackson-dataformat-xml ${jackson.version}
- commons-validator:commons-validator 1.4.0
- javax.transaction:jta 1.1
- org.aspectj:aspectjweaver 1.6.12
- org.eclipse.jetty:jetty-servlets 9.4.41.v20210516
- org.eol:eol-globi-lib 0.24.1-SNAPSHOT
- org.eol:eol-globi-resource-remote 0.24.1-SNAPSHOT
- org.hibernate.validator:hibernate-validator 6.2.0.Final
- org.neo4j.driver:neo4j-java-driver 1.7.5
- org.slf4j:slf4j-simple ${slf4j.version}
- org.springframework:spring-aop 3.2.18.RELEASE
- org.springframework:spring-aspects 3.2.18.RELEASE
- org.springframework:spring-context-support 3.2.18.RELEASE
- org.springframework:spring-tx 3.2.18.RELEASE
- org.springframework:spring-webmvc 3.2.18.RELEASE
- org.eol:eol-globi-neo4j-index 0.24.1-SNAPSHOT test
- org.glassfish:jakarta.el 3.0.3 test
- org.neo4j.test:neo4j-harness ${neo4j.version} test
- org.springframework:spring-test 3.2.18.RELEASE test
- ${project.groupId}:eol-globi-lib ${project.version}
- ${project.groupId}:eol-globi-resource-remote ${project.version}
- org.apache.lucene:lucene-analyzers-common ${lucene.version}
Score: 9.228671328660907