Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

Global Biotic Interactions

Global Biotic Interactions provides access to existing species interaction datasets.
https://github.com/globalbioticinteractions/globalbioticinteractions

Category: Biosphere
Sub Category: Biodiversity Data Access and Management

Keywords

biodiversity bioinformatics biology diet diseases ecoinformatics ecology eol etl-framework food-webs globi parasites pollinators species-interactions

Keywords from Contributors

phenotypes open-science species biodiversity-data ecological-informatics biological-traits interactions globalbioticinteractions biotic big-bee

Last synced: about 23 hours ago
JSON representation

Repository metadata

Global Biotic Interactions provides access to existing species interaction datasets

README.md

Welcome to Global Biotic Interactions (GloBI)

The mission of this project is to find efficient ways to normalize and integrate species interaction data to enable researchers and enthusiasts to answer questions like: Which species does an Angel Shark ( Squatina squatina ) eat in the Gulf of Mexico?

Please see https://globalbioticinteractions.org for more information.

Java CI DOI

Citing GloBI

Poelen, J. H., Simons, J. D., & Mungall, C. J. (2014). Global Biotic Interactions: An open infrastructure to share and analyze species-interaction datasets. Ecological Informatics, 24, 148–159. doi:10.1016/j.ecoinf.2014.08.005

Licenses

gplv3cc-by-nc

Unless otherwise noted, source code is released under GLPv3 and data is available under Creative Commons Attribution 4.0 International License. We are trying to do the best we can to ensure that the references to the original data sources are preserved and attributed. If you feel that there are better ways to do this, please let us know.

Owner metadata

GitHub Events

Total
Last Year

Committers metadata

Last synced: 1 day ago

Total Commits: 4,773
Total Committers: 22
Avg Commits per committer: 216.955
Development Distribution Score (DDS): 0.515

Commits in past year: 145
Committers in past year: 3
Avg Commits per committer in past year: 48.333
Development Distribution Score (DDS) in past year: 0.021

Name Email Commits
Jorrit Poelen j****n@g****m 2317
jhpoelen j****n@x****l 1770
Jorrit Poelen j****t@j****l 579
James Simons j****s@t****u 42
reiz r****z@g****m 18
Chris Mungall c****m@b****g 17
dependabot[bot] 4****] 9
jrfep j****s@g****m 3
José Augusto Salim j****m@u****r 2
Jonathan Leitschuh J****h@g****m 2
José Augusto Salim z****l 2
omahs 7****s 2
Brian Hayden b****n@u****a 1
Jorrit Poelen 1****n 1
Katja Seltmann e****s@g****m 1
BrianHayden b****n@h****i 1
Mariya Dimitrova m****v@g****m 1
Shannon VanWagner v****r@g****m 1
mdrishti 4****i 1
proopnarine p****e@c****g 1
reiz r****1@g****m 1
tmitchell1 T****l@t****u 1

Committer domains:

Issue and Pull Request metadata

Last synced: 3 days ago

Total issues: 1,082
Total pull requests: 29
Average time to close issues: 6 months
Average time to close pull requests: 12 days
Total issue authors: 90
Total pull request authors: 9
Average comments per issue: 3.46
Average comments per pull request: 0.79
Merged pull request: 20
Bot issues: 0
Bot pull requests: 17

Past year issues: 74
Past year pull requests: 2
Past year average time to close issues: 11 days
Past year average time to close pull requests: about 2 hours
Past year issue authors: 7
Past year pull request authors: 2
Past year average comments per issue: 2.36
Past year average comments per pull request: 2.5
Past year merged pull request: 1
Past year bot issues: 0
Past year bot pull requests: 1

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/globalbioticinteractions/globalbioticinteractions

Top Issue Authors

  • jhpoelen (830)
  • seltmann (43)
  • jhammock (30)
  • qgroom (13)
  • zedomel (7)
  • arw36 (7)
  • mdrishti (6)
  • BarbaraMeulenbelt (6)
  • coding46 (6)
  • neilcobb (5)
  • kbseah (5)
  • millerse (4)
  • KatjaSchulz (4)
  • Daniel-Mietchen (4)
  • jemmybutton (3)

Top Pull Request Authors

  • dependabot[bot] (17)
  • zedomel (3)
  • JLLeitschuh (2)
  • mdrishti (2)
  • simatei (1)
  • omahs (1)
  • tmitchell1 (1)
  • jhpoelen (1)
  • shannon-vanwagner (1)

Top Issue Labels

  • suggest to index (302)
  • new feature (124)
  • needs review (71)
  • bug (41)
  • globi3 (33)
  • external issue (25)
  • experimental (18)
  • needs manual transcription (15)
  • non-open data (14)
  • optimization (9)
  • discussion (5)
  • documentation (5)
  • needs vocabulary / ontology (5)
  • data management (2)
  • workaround exists (1)
  • needs parser (1)

Top Pull Request Labels

  • dependencies (17)
  • java (1)

Package metadata

proxy.golang.org: github.com/globalbioticinteractions/globalbioticinteractions

Dependencies

elton4n/pom.xml maven
  • org.eol:eol-globi-neo4j-index 0.24.1-SNAPSHOT
eol-globi-cache/pom.xml maven
  • ${project.groupId}:eol-globi-lib ${project.version}
  • ${project.groupId}:eol-globi-resource-remote ${project.version} test
eol-globi-data-sources/pom.xml maven
  • ${project.groupId}:eol-globi-cache ${project.version}
  • ${project.groupId}:eol-globi-jcoord ${project.version}
  • com.healthmarketscience.jackcess:jackcess 2.1.6
  • com.univocity:univocity-parsers 2.3.0
  • org.apache.jena:jena-tdb ${jena.version}
  • org.codehaus.swizzle:swizzle-stream 1.6.2
  • org.gbif:dwca-io 2.11
  • org.jsoup:jsoup 1.14.2
  • rome:rome 1.0
  • ${project.groupId}:eol-globi-resource-remote ${project.version} test
eol-globi-datasets/pom.xml maven
  • org.eol:eol-globi-datasets 1.1-SNAPSHOT
  • org.globalbioticinteractions:elton4n 0.24.1-SNAPSHOT
eol-globi-geo/pom.xml maven
  • org.eol:eol-globi-lib 0.6-SNAPSHOT
  • org.geotools:gt-shapefile 10.3
eol-globi-jcoord/pom.xml maven
  • uk.org.mygrid.resources.jcoord:jcoord 1.0
eol-globi-lib/pom.xml maven
  • com.fasterxml.jackson.core:jackson-core ${jackson.version}
  • com.fasterxml.jackson.core:jackson-databind ${jackson.version}
  • com.vividsolutions:jts 1.13
  • joda-time:joda-time 2.10.1
  • org.apache.commons:commons-collections4 4.4
  • org.apache.commons:commons-text 1.3
  • org.eol:eol-globi-resource-local ${project.version}
  • org.globalbioticinteractions:doi4j 0.1.0
  • org.mapdb:mapdb ${mapdb.version}
eol-globi-neo4j/pom.xml maven
  • ${project.groupId}:eol-globi-lib ${project.version}
  • org.neo4j:neo4j ${neo4j.version}
  • org.neo4j:neo4j-slf4j ${neo4j.version}
eol-globi-neo4j-index/pom.xml maven
  • ${project.groupId}:eol-globi-data-sources ${project.version}
  • ${project.groupId}:eol-globi-neo4j-index-export ${project.version}
  • ${project.groupId}:eol-globi-taxon-resolver ${project.version}
  • cglib:cglib-nodep 2.2
  • commons-cli:commons-cli 1.2
  • org.slf4j:slf4j-simple ${slf4j.version}
  • org.neo4j.community:it-test-support ${neo4j.version} test
eol-globi-neo4j-index-export/pom.xml maven
  • ${project.groupId}:eol-globi-neo4j ${project.version}
  • com.github.dfabulich:sitemapgen4j 1.0.4
  • commons-codec:commons-codec ${commons-codec.version}
eol-globi-parent/pom.xml maven
  • junit:junit 4.13.1 test
  • org.hamcrest:hamcrest-all 1.3 test
  • org.mockito:mockito-core 1.9.0 test
eol-globi-registry/pom.xml maven
  • ${project.groupId}:eol-globi-data-sources ${project.version}
  • ${project.groupId}:eol-globi-resource-remote ${project.version}
eol-globi-resource-local/pom.xml maven
  • ${project.groupId}:eol-globi-resource ${project.version}
  • commons-io:commons-io ${commons-io.version}
  • org.apache.commons:commons-lang3 ${commons-lang3.version}
  • org.ostermiller:utils 1.07.00
  • org.slf4j:jcl-over-slf4j ${slf4j.version}
  • org.slf4j:slf4j-api ${slf4j.version}
eol-globi-resource-remote/pom.xml maven
  • ${project.groupId}:eol-globi-resource-local ${project.version}
  • commons-net:commons-net 3.6
  • org.apache.httpcomponents:httpclient ${httpcomponents.version}
  • org.apache.httpcomponents:httpmime ${httpcomponents.version}
eol-globi-rest/pom.xml maven
  • javax.mail:mail 1.4 provided
  • javax.servlet:servlet-api 2.5 provided
  • com.fasterxml.jackson.dataformat:jackson-dataformat-xml ${jackson.version}
  • commons-validator:commons-validator 1.4.0
  • javax.transaction:jta 1.1
  • org.aspectj:aspectjweaver 1.6.12
  • org.eclipse.jetty:jetty-servlets 9.4.41.v20210516
  • org.eol:eol-globi-lib 0.24.1-SNAPSHOT
  • org.eol:eol-globi-resource-remote 0.24.1-SNAPSHOT
  • org.hibernate.validator:hibernate-validator 6.2.0.Final
  • org.neo4j.driver:neo4j-java-driver 1.7.5
  • org.slf4j:slf4j-simple ${slf4j.version}
  • org.springframework:spring-aop 3.2.18.RELEASE
  • org.springframework:spring-aspects 3.2.18.RELEASE
  • org.springframework:spring-context-support 3.2.18.RELEASE
  • org.springframework:spring-tx 3.2.18.RELEASE
  • org.springframework:spring-webmvc 3.2.18.RELEASE
  • org.eol:eol-globi-neo4j-index 0.24.1-SNAPSHOT test
  • org.glassfish:jakarta.el 3.0.3 test
  • org.neo4j.test:neo4j-harness ${neo4j.version} test
  • org.springframework:spring-test 3.2.18.RELEASE test
eol-globi-taxon-resolver/pom.xml maven
  • ${project.groupId}:eol-globi-lib ${project.version}
  • ${project.groupId}:eol-globi-resource-remote ${project.version}
  • org.apache.lucene:lucene-analyzers-common ${lucene.version}

Score: -Infinity