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basin3d

A generalized data synthesis model that applies across a variety of earth science observation types (hydrology, geochemistry, climate etc.).
https://github.com/basin-3d/basin3d

Category: Hydrosphere
Sub Category: Freshwater and Hydrology

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Repository metadata

The core BASIN-3D application that uses a generalized data synthesis model that applies across a variety of earth science observation types (hydrology, geochemistry, climate etc.). https://basin3d.readthedocs.io/

README.md

Python package
Pypi

basin3d

Broker for Assimilation, Synthesis and Integration of eNvironmental Diverse, Distributed Datasets.

basin3d

BASIN-3D is a software ecosystem that synthesizes diverse earth science data from a variety of remote data sources on-demand, without the need for storing data in a single database. It is designed to parse, translate, and synthesize diverse observations from well-curated repositories into standardized formats for scientific uses such as analysis and visualization.

basin3d is the core BASIN-3D application that uses a generalized data synthesis model that applies across a variety of earth science observation types (hydrology, geochemistry, climate etc.).

basin3d has available plugins that can connect to specific data sources of interest, and map the data source vocabularies to the basin3d synthesis models.

Getting Started

Install

Install a source distribution with pip:

$ pip install basin3d

Make sure your installation was successful:

$ python
>>> import basin3d
>>>

Documentation

See latest basin3d documentation here

Contributing

If you’re interested in contributing to basin3d, check out out our contributing guidelines. It will help explain why, what, and how to get started.

Changelog

See the changelog for a history of updates and changes to basin3d

Authors

  • Charuleka Varadharajan - LBL
  • Valerie Hendrix - LBL
  • Danielle Svehla Christianson - LBL
  • Catherine Wong - LBL

Copyright

Broker for Assimilation, Synthesis and Integration of eNvironmental Diverse, Distributed Datasets (BASIN-3D) Copyright (c) 2019, The
Regents of the University of California, through Lawrence Berkeley National
Laboratory (subject to receipt of any required approvals from the U.S.
Dept. of Energy). All rights reserved.

If you have questions about your rights to use or distribute this software,
please contact Berkeley Lab's Intellectual Property Office at
IPO@lbl.gov.

NOTICE. This Software was developed under funding from the U.S. Department
of Energy and the U.S. Government consequently retains certain rights. As
such, the U.S. Government has been granted for itself and others acting on
its behalf a paid-up, nonexclusive, irrevocable, worldwide license in the
Software to reproduce, distribute copies to the public, prepare derivative
works, and perform publicly and display publicly, and to permit other to do
so.

License

See LICENSE file for licensing details

Acknowledgments

This research is supported as part of the ESS-DIVE repository, the Watershed Function Scientific Focus Area, and a DOE Early Career Project funded by the U.S. Department of Energy, Office of Science, Office of Biological and Environmental Research under Award no. DE-AC02-05CH11231. This research used resources of the National Energy Research Scientific Computing Center (NERSC), a U.S. Department of Energy Office of Science User Facility operated under Contract No. DE-AC02-05CH11231.

Owner metadata

GitHub Events

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Last Year

Committers metadata

Last synced: 3 days ago

Total Commits: 121
Total Committers: 6
Avg Commits per committer: 20.167
Development Distribution Score (DDS): 0.554

Commits in past year: 5
Committers in past year: 1
Avg Commits per committer in past year: 5.0
Development Distribution Score (DDS) in past year: 0.0

Name Email Commits
dschristianson d****a@b****u 54
Val Hendrix v****x@l****v 41
Cat c****g@l****v 13
heycatwonton c****g@b****u 6
Cat Wong c****t@l****v 6
Chris Mungall c****m@b****g 1

Committer domains:

Issue and Pull Request metadata

Last synced: 9 days ago

Total issues: 110
Total pull requests: 55
Average time to close issues: 11 months
Average time to close pull requests: 10 days
Total issue authors: 6
Total pull request authors: 4
Average comments per issue: 0.35
Average comments per pull request: 0.98
Merged pull request: 48
Bot issues: 0
Bot pull requests: 0

Past year issues: 4
Past year pull requests: 2
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 0.0
Past year average comments per pull request: 0.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/basin-3d/basin3d

Top Issue Authors

  • dschristianson (50)
  • vchendrix (47)
  • heycatwonton (8)
  • helbashandy (2)
  • charuleka (2)
  • cmungall (1)

Top Pull Request Authors

  • dschristianson (32)
  • vchendrix (18)
  • heycatwonton (4)
  • cmungall (1)

Top Issue Labels

  • BASIN-3D (56)
  • bug (31)
  • ESS-DIVE:T2 (22)
  • ESS-DIVE2 (22)
  • enhancement (20)
  • documentation (10)
  • invalid (9)
  • testing (4)
  • discussion (3)
  • Epic (3)
  • ESS-DIVE (2)
  • WF-SFA (2)
  • cannot reproduce (2)
  • question (2)
  • github-actions (1)
  • wontfix (1)
  • duplicate (1)
  • major (1)

Top Pull Request Labels

  • documentation (2)
  • enhancement (1)
  • bug (1)

Package metadata

pypi.org: basin3d

BASIN-3D Core Framework

  • Homepage:
  • Documentation: https://basin3d.readthedocs.io/
  • Licenses: BSD License
  • Latest release: 1.3.0 (published 10 months ago)
  • Last Synced: 2026-06-20T05:00:39.080Z (3 days ago)
  • Versions: 16
  • Dependent Packages: 1
  • Dependent Repositories: 1
  • Downloads: 285 Last month
  • Rankings:
    • Dependent packages count: 7.529%
    • Average: 15.066%
    • Downloads: 15.105%
    • Dependent repos count: 22.563%
  • Maintainers (2)

Dependencies

docs/requirements.txt pypi
  • graphviz *
  • h5py *
  • sphinx *
  • sphinx-autodoc-typehints *
  • sphinx_rtd_theme *
requirements.txt pypi
  • h5py *
  • pandas ==1.1.5
  • pydantic *
  • pyyaml <6.0
  • requests *
  • tables *
  • tinydb *
.github/workflows/main.yml actions
  • actions/checkout v2 composite
  • actions/setup-python v1 composite
  • actions/upload-artifact v2 composite

Score: 11.677693862516595