Plant Trait Ontology
A controlled vocabulary of describe phenotypic traits in plants.
https://github.com/planteome/plant-trait-ontology
Category: Sustainable Development
Sub Category: Taxonomy and Ontology
Keywords
obo obofoundry owl phenotype plant-trait-ontology plant-traits
Keywords from Contributors
ontology exposures plant-treatments annotation semantics integrated csv bioinformatics semantic-web biocuration
Last synced: about 2 hours ago
JSON representation
Repository metadata
Explore the Plant Trait Ontology on the Planteome site.
- Host: GitHub
- URL: https://github.com/planteome/plant-trait-ontology
- Owner: Planteome
- License: cc-by-4.0
- Created: 2015-05-08T21:19:59.000Z (almost 10 years ago)
- Default Branch: master
- Last Pushed: 2025-04-19T09:00:13.000Z (8 days ago)
- Last Synced: 2025-04-20T09:44:17.257Z (7 days ago)
- Topics: obo, obofoundry, owl, phenotype, plant-trait-ontology, plant-traits
- Language: Python
- Homepage: http://browser.planteome.org/amigo/term/TO:0000387#display-lineage-tab
- Size: 15 MB
- Stars: 41
- Watchers: 22
- Forks: 12
- Open Issues: 256
- Releases: 17
-
Metadata Files:
- Readme: README.md
- License: LICENSE
README.md
This is the repository for the Plant Trait Ontology.
The current release version of the TO can be accessed through the official PURLs:
- http://purl.obolibrary.org/obo/to.owl
- http://purl.obolibrary.org/obo/to.obo
- http://purl.obolibrary.org/obo/to/subsets/to-basic.obo
Or via http://planteome.org/
All releases can be found here: https://github.com/Planteome/plant-trait-ontology/releases
Owner metadata
- Name: The Planteome Project
- Login: Planteome
- Email:
- Kind: organization
- Description: Home for the Common Reference Ontologies for Plants
- Website: http://www.planteome.org/
- Location: Corvallis, OR, USA
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/7377492?v=4
- Repositories: 27
- Last ynced at: 2023-03-01T13:00:46.450Z
- Profile URL: https://github.com/Planteome
GitHub Events
Total
- Issues event: 1
- Watch event: 2
- Issue comment event: 1
- Push event: 33
- Pull request event: 1
- Gollum event: 7
- Fork event: 1
Last Year
- Issues event: 1
- Watch event: 2
- Issue comment event: 1
- Push event: 33
- Pull request event: 1
- Gollum event: 7
- Fork event: 1
Committers metadata
Last synced: 5 days ago
Total Commits: 1,268
Total Committers: 21
Avg Commits per committer: 60.381
Development Distribution Score (DDS): 0.593
Commits in past year: 57
Committers in past year: 2
Avg Commits per committer in past year: 28.5
Development Distribution Score (DDS) in past year: 0.351
| Name | Commits | |
|---|---|---|
| cooperl09 | c****l@s****u | 516 |
| Justin Elser | e****j@s****u | 221 |
| marieALaporte | m****e@g****m | 139 |
| moorel | m****l@6****4 | 80 |
| Ethan Johnson | j****h@c****u | 73 |
| pankaj | p****j@6****4 | 72 |
| Chris Mungall | c****m@b****g | 52 |
| cooperl | c****l@6****4 | 49 |
| austinmeier | m****a@s****u | 33 |
| Martin Larralde | m****e@e****r | 8 |
| cwt6 | c****6@6****4 | 7 |
| Laurel Cooper | c****l@1****u | 4 |
| Laurel Cooper | c****l@1****u | 4 |
| DoctorBud | d****n@q****m | 2 |
| ejohnson1 | j****h@o****u | 2 |
| Laurel Cooper | c****l@1****u | 1 |
| cjm | c****m@6****4 | 1 |
| zeamary | z****y@6****4 | 1 |
| seymourmegan | m****1@g****m | 1 |
| cjmungall | c****l@l****v | 1 |
| Charles Tapley Hoyt | c****t@g****m | 1 |
Committer domains:
- science.oregonstate.edu: 3
- lbl.gov: 1
- 128-193-227-181.science.oregonstate.edu: 1
- onid.oregonstate.edu: 1
- quantumclay.com: 1
- 128-193-226-179.science.oregonstate.edu: 1
- 128-193-227-165.science.oregonstate.edu: 1
- ens-cachan.fr: 1
- berkeleybop.org: 1
- cord3086-pc6.science.oregonstate.edu: 1
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 132
Total pull requests: 50
Average time to close issues: about 2 years
Average time to close pull requests: 18 days
Total issue authors: 22
Total pull request authors: 8
Average comments per issue: 1.0
Average comments per pull request: 0.6
Merged pull request: 41
Bot issues: 0
Bot pull requests: 0
Past year issues: 2
Past year pull requests: 1
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 1
Past year average comments per issue: 1.0
Past year average comments per pull request: 0.0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- planteome-user (33)
- celineaubert (21)
- cooperl09 (15)
- sammyjava (11)
- easr (8)
- marieALaporte (7)
- diatomsRcool (5)
- cmungall (4)
- ScottKalberer (4)
- ramonawalls (4)
- bradfordcondon (3)
- maxglycine (2)
- althonos (2)
- xypan1232 (2)
- cthoyt (2)
Top Pull Request Authors
- marieALaporte (33)
- cthoyt (4)
- diatomsRcool (4)
- DoctorBud (3)
- cooperl09 (3)
- scicrow (1)
- althonos (1)
- sammyjava (1)
Top Issue Labels
- From SourceForge (33)
- Request: New ontology term(s) (15)
- Plant Morphology Trait (12)
- Existing term-related revision or comment (8)
- low priority (6)
- Yield Trait (5)
- high priority (4)
- Quality Trait (3)
- Creation Request (1)
- Stress Trait (1)
- Plant Growth and Development Trait (1)
Top Pull Request Labels
Score: 8.738254576526122