AliNe: A Flexible and Efficient Nextflow Pipeline for Read Alignment
AliNe: A Flexible and Efficient Nextflow Pipeline for Read Alignment - Published in JOSS (2025)
https://github.com/juke34/aline
Keywords
bbmap bmw-mem2 bowtie bowtie2 bwa bwa-sw graphmap2 hisat2 kallisto last minimap2 nextflow ngmlr novoalign nucmer salmon star starlong sublong subread
Last synced: 10 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease
- Host: GitHub
- URL: https://github.com/juke34/aline
- Owner: Juke34
- License: mit
- Created: 2023-07-03T12:06:34.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2025-06-26T09:54:30.000Z (about 1 year ago)
- Last Synced: 2025-10-24T23:39:53.925Z (10 months ago)
- Topics: bbmap, bmw-mem2, bowtie, bowtie2, bwa, bwa-sw, graphmap2, hisat2, kallisto, last, minimap2, nextflow, ngmlr, novoalign, nucmer, salmon, star, starlong, sublong, subread
- Language: Nextflow
- Homepage:
- Size: 13.4 MB
- Stars: 20
- Watchers: 3
- Forks: 3
- Open Issues: 1
- Releases: 0
-
Metadata Files:
- Readme: README.md
- Contributing: CONTRIBUTING.md
- License: LICENSE
- Citation: CITATION.cff
Owner metadata
- Name: Jacques Dainat
- Login: Juke34
- Email:
- Kind: user
- Description: Bioinformatician at IRD
- Website: https://www.researchgate.net/profile/Jacques-Dainat-2
- Location: Montpellier, France
- Twitter: JacquesDainat
- Company: IRD
- Icon url: https://avatars.githubusercontent.com/u/6769395?u=2e4ccaf31b2547ba8ce115ead47e35403812cc5e&v=4
- Repositories: 2
- Last ynced at: 2023-03-05T17:13:18.130Z
- Profile URL: https://github.com/Juke34
GitHub Events
Total
- Create event: 28
- Release event: 13
- Issues event: 30
- Watch event: 17
- Delete event: 18
- Issue comment event: 30
- Push event: 84
- Pull request review event: 3
- Pull request event: 39
- Fork event: 3
Last Year
- Create event: 28
- Release event: 13
- Issues event: 30
- Watch event: 17
- Delete event: 18
- Issue comment event: 30
- Push event: 80
- Pull request review event: 3
- Pull request event: 39
- Fork event: 3
Committers metadata
Last synced: 10 months ago
Total Commits: 174
Total Committers: 3
Avg Commits per committer: 58.0
Development Distribution Score (DDS): 0.029
Commits in past year: 128
Committers in past year: 3
Avg Commits per committer in past year: 42.667
Development Distribution Score (DDS) in past year: 0.039
| Name | Commits | |
|---|---|---|
| Jacques Dainat | j****t@i****r | 169 |
| Julia | 2****a | 3 |
| Robrecht Cannoodt | r****d@g****m | 2 |
Committer domains:
- ird.fr: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 17
Total pull requests: 43
Average time to close issues: 10 days
Average time to close pull requests: about 12 hours
Total issue authors: 4
Total pull request authors: 3
Average comments per issue: 1.29
Average comments per pull request: 0.26
Merged pull request: 39
Bot issues: 0
Bot pull requests: 0
Past year issues: 17
Past year pull requests: 43
Past year average time to close issues: 10 days
Past year average time to close pull requests: about 12 hours
Past year issue authors: 4
Past year pull request authors: 3
Past year average comments per issue: 1.29
Past year average comments per pull request: 0.26
Past year merged pull request: 39
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- rcannood (8)
- gchure (4)
- Juke34 (4)
- eascarrunz (1)
Top Pull Request Authors
- Juke34 (34)
- jromanowska (4)
- rcannood (4)
Top Issue Labels
Top Pull Request Labels
Score: 4.143134726391533