ibis.iSDM

Provides a series of convenience functions to fit integrated Species Distribution Models.
https://github.com/iiasa/ibis.iSDM

Category: Biosphere
Sub Category: Species Distribution Modeling

Keywords

bayesian biodiversity integrated-framework poisson-process scenarios sdm spatial-grain spatial-predictions species-distribution-modelling

Keywords from Contributors

spatial-analysis area-of-habitat biodiversity-indicators iucn land-use range conservation

Last synced: about 19 hours ago
JSON representation

Repository metadata

Modelling framework for creating Integrated SDMS

Host: GitHub
URL: https://github.com/iiasa/ibis.iSDM
Owner: iiasa
License: cc-by-4.0
Created: 2021-01-21T20:27:17.000Z (over 4 years ago)
Default Branch: master
Last Pushed: 2025-04-08T11:51:07.000Z (19 days ago)
Last Synced: 2025-04-20T09:04:38.055Z (7 days ago)
Topics: bayesian, biodiversity, integrated-framework, poisson-process, scenarios, sdm, spatial-grain, spatial-predictions, species-distribution-modelling
Language: R
Homepage: https://iiasa.github.io/ibis.iSDM/
Size: 426 MB
Stars: 20
Watchers: 8
Forks: 4
Open Issues: 15
Releases: 9
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- License: LICENSE.md
- Citation: CITATION.cff

README.Rmd

          ---
output:
  rmarkdown::github_document:
    html_preview: no
---



```{r, echo = FALSE, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>"
)
```

# The ibis framework - An **I**ntegrated model for **B**iod**I**versity distribution projection**S**





[![Lifecycle](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)
[![r-cmd-check](https://github.com/iiasa/ibis.iSDM/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/iiasa/ibis.iSDM/actions/workflows/R-CMD-check.yaml)
[![License: CC BY 4.0](https://img.shields.io/badge/license-CC BY 4.0-blue.svg)](https://creativecommons.org/licenses/by/4.0/)
[![Codecov Status](https://codecov.io/gh/iiasa/ibis.iSDM/branch/master/graph/badge.svg)](https://app.codecov.io/gh/iiasa/ibis.iSDM?branch=master)
[![Published in](https://img.shields.io/badge/Ecological_Informatics-green?style=plastic&label=Published%20in&link=https%3A%2F%2Fdoi.org%2F10.1016%2Fj.ecoinf.2023.102127)](https://doi.org/10.1016/j.ecoinf.2023.102127)
[![ibis.iSDM status badge](https://iiasa.r-universe.dev/badges/ibis.iSDM)](https://iiasa.r-universe.dev/ibis.iSDM)
[![CRAN status](https://www.r-pkg.org/badges/version/ibis.iSDM)](https://CRAN.R-project.org/package=ibis.iSDM)

  
The **ibis.iSDM** package provides a series of convenience functions to fit integrated Species Distribution Models (iSDMs). With integrated models we generally refer to SDMs that incorporate information from different biodiversity datasets, external parameters such as priors or offsets with respect to certain variables and regions. See [Fletcher et al. (2019)](https://doi.org/10.1002/ecy.2710) and [Isaac et al. (2020)](https://linkinghub.elsevier.com/retrieve/pii/S0169534719302551) for an introduction to iSDMs.

## Installation

The latest version can be installed from GitHub. A CRAN release is planned, but 
in the meantime the package can be found on R-universe as well.

```{r gh-installation, eval = FALSE, message=FALSE}
# For installation (Not yet done)
install.packages("ibis.iSDM", repos = "https://iiasa.r-universe.dev")

# For Installation directly from github
install.packages("remotes")
remotes::install_github("IIASA/ibis.iSDM")
```

## Basic usage

See relevant [reference site](https://iiasa.github.io/ibis.iSDM/) and [articles](https://iiasa.github.io/ibis.iSDM/articles/01_train_simple_model.html).

Note that the package is in active development and parameters of some functions might change.

**Citation:**

Jung, Martin. 2023. “An Integrated Species Distribution Modelling Framework for Heterogeneous Biodiversity Data.” Ecological Informatics, 102127, [DOI](https://doi.org/10.1016/j.ecoinf.2023.102127)


## Acknowledgement 

**ibis.iSDM** is developed and maintained by the Biodiversity, Ecology and Conservation group at the International Institute for Applied Systems Analysis (IIASA), Austria.

## Contributors






All contributions to this project are gratefully acknowledged using the [`allcontributors` package](https://github.com/ropenscilabs/allcontributors) following the [all-contributors](https://allcontributors.org) specification. Contributions of any kind are welcome!









Martin-Jung






mhesselbarth






jeffreyhanson

Citation (CITATION.cff)

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "ibis.iSDM" in publications use:'
type: software
license: CC-BY-4.0
title: 'ibis.iSDM: Modelling framework for integrated biodiversity distribution scenarios'
version: 0.1.5
abstract: Integrated framework of modelling the distribution of species and ecosystems
  in a suitability framing. This package allows the estimation of integrated species
  distribution models (iSDM) based on several sources of evidence and provided presence-only
  and presence-absence datasets. It makes heavy use of point-process models for estimating
  habitat suitability and allows to include spatial latent effects and priors in the
  estimation. To do so 'ibis.iSDM' supports a number of engines for Bayesian and more
  non-parametric machine learning estimation. Further, the 'ibis.iSDM' is specifically
  customized to support spatial-temporal projections of habitat suitability into the
  future.
authors:
- family-names: Jung
  given-names: Martin
  email: [email protected]
  orcid: https://orcid.org/0000-0002-7569-1390
preferred-citation:
  type: article
  title: An integrated species distribution modelling framework for heterogeneous
    biodiversity data
  authors:
  - family-names: Jung
    given-names: Martin
    email: [email protected]
    orcid: https://orcid.org/0000-0002-7569-1390
  journal: Ecological Informatics
  volume: '76'
  year: '2023'
  url: https://doi.org/10.1016/j.ecoinf.2023.102127
  start: '102127'
repository-code: https://github.com/iiasa/ibis.iSDM
url: https://iiasa.github.io/ibis.iSDM/
contact:
- family-names: Jung
  given-names: Martin
  email: [email protected]
  orcid: https://orcid.org/0000-0002-7569-1390
keywords:
- bayesian
- biodiversity
- integrated-framework
- poisson-process
- scenarios
- sdm
- spatial-grain
- spatial-predictions
- species-distribution-modelling
references:
- type: generic
  title: An integrated species distribution modelling framework for heterogeneous
    biodiversity data
  authors:
  - family-names: Jung
    given-names: Martin
  - family-names: Hesselbarth
    given-names: Maximilian H.K.
  year: '2023'
  version: 0.0.9
- type: software
  title: R6
  abstract: 'R6: Encapsulated Classes with Reference Semantics'
  notes: Imports
  url: https://r6.r-lib.org
  repository: https://CRAN.R-project.org/package=R6
  authors:
  - family-names: Chang
    given-names: Winston
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.R6
  version: '>= 2.5.0'
- type: software
  title: assertthat
  abstract: 'assertthat: Easy Pre and Post Assertions'
  notes: Imports
  repository: https://CRAN.R-project.org/package=assertthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.assertthat
  version: '>= 0.2.0'
- type: software
  title: doFuture
  abstract: 'doFuture: Use Foreach to Parallelize via the Future Framework'
  notes: Imports
  url: https://doFuture.futureverse.org
  repository: https://CRAN.R-project.org/package=doFuture
  authors:
  - family-names: Bengtsson
    given-names: Henrik
    email: [email protected]
    orcid: https://orcid.org/0000-0002-7579-5165
  year: '2024'
  doi: 10.32614/CRAN.package.doFuture
  version: '>= 0.12.2'
- type: software
  title: future
  abstract: 'future: Unified Parallel and Distributed Processing in R for Everyone'
  notes: Imports
  url: https://future.futureverse.org
  repository: https://CRAN.R-project.org/package=future
  authors:
  - family-names: Bengtsson
    given-names: Henrik
    email: [email protected]
    orcid: https://orcid.org/0000-0002-7579-5165
  year: '2024'
  doi: 10.32614/CRAN.package.future
  version: '>= 1.23.0'
- type: software
  title: parallelly
  abstract: 'parallelly: Enhancing the ''parallel'' Package'
  notes: Imports
  url: https://parallelly.futureverse.org
  repository: https://CRAN.R-project.org/package=parallelly
  authors:
  - family-names: Bengtsson
    given-names: Henrik
    email: [email protected]
    orcid: https://orcid.org/0000-0002-7579-5165
  year: '2024'
  doi: 10.32614/CRAN.package.parallelly
  version: '>= 1.30.0'
- type: software
  title: parallel
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: foreach
  abstract: 'foreach: Provides Foreach Looping Construct'
  notes: Imports
  url: https://github.com/RevolutionAnalytics/foreach
  repository: https://CRAN.R-project.org/package=foreach
  authors:
  - name: Microsoft
  - family-names: Weston
    given-names: Steve
  year: '2024'
  doi: 10.32614/CRAN.package.foreach
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Imports
  url: https://dplyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=dplyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: François
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Henry
    given-names: Lionel
  - family-names: Müller
    given-names: Kirill
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Vaughan
    given-names: Davis
    email: [email protected]
    orcid: https://orcid.org/0000-0003-4777-038X
  year: '2024'
  doi: 10.32614/CRAN.package.dplyr
- type: software
  title: geodist
  abstract: 'geodist: Fast, Dependency-Free Geodesic Distance Calculations'
  notes: Imports
  url: https://hypertidy.github.io/geodist/
  repository: https://CRAN.R-project.org/package=geodist
  authors:
  - family-names: Padgham
    given-names: Mark
    email: [email protected]
  - family-names: Sumner
    given-names: Michael D.
  year: '2024'
  doi: 10.32614/CRAN.package.geodist
- type: software
  title: ggplot2
  abstract: 'ggplot2: Create Elegant Data Visualisations Using the Grammar of Graphics'
  notes: Imports
  url: https://ggplot2.tidyverse.org
  repository: https://CRAN.R-project.org/package=ggplot2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Chang
    given-names: Winston
    orcid: https://orcid.org/0000-0002-1576-2126
  - family-names: Henry
    given-names: Lionel
  - family-names: Pedersen
    given-names: Thomas Lin
    email: [email protected]
    orcid: https://orcid.org/0000-0002-5147-4711
  - family-names: Takahashi
    given-names: Kohske
  - family-names: Wilke
    given-names: Claus
    orcid: https://orcid.org/0000-0002-7470-9261
  - family-names: Woo
    given-names: Kara
    orcid: https://orcid.org/0000-0002-5125-4188
  - family-names: Yutani
    given-names: Hiroaki
    orcid: https://orcid.org/0000-0002-3385-7233
  - family-names: Dunnington
    given-names: Dewey
    orcid: https://orcid.org/0000-0002-9415-4582
  - family-names: Brand
    given-names: Teun
    name-particle: van den
    orcid: https://orcid.org/0000-0002-9335-7468
  year: '2024'
  doi: 10.32614/CRAN.package.ggplot2
- type: software
  title: graphics
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: methods
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: Matrix
  abstract: 'Matrix: Sparse and Dense Matrix Classes and Methods'
  notes: Imports
  url: https://R-forge.R-project.org/tracker/?atid=294&group_id=61
  repository: https://CRAN.R-project.org/package=Matrix
  authors:
  - family-names: Bates
    given-names: Douglas
    orcid: https://orcid.org/0000-0001-8316-9503
  - family-names: Maechler
    given-names: Martin
    email: [email protected]
    orcid: https://orcid.org/0000-0002-8685-9910
  - family-names: Jagan
    given-names: Mikael
    orcid: https://orcid.org/0000-0002-3542-2938
  year: '2024'
  doi: 10.32614/CRAN.package.Matrix
- type: software
  title: ncdf4
  abstract: 'ncdf4: Interface to Unidata netCDF (Version 4 or Earlier) Format Data
    Files'
  notes: Imports
  url: https://cirrus.ucsd.edu/~pierce/ncdf/
  repository: https://CRAN.R-project.org/package=ncdf4
  authors:
  - family-names: Pierce
    given-names: David
    email: [email protected]
    orcid: https://orcid.org/0000-0002-2453-9030
  year: '2024'
  doi: 10.32614/CRAN.package.ncdf4
- type: software
  title: posterior
  abstract: 'posterior: Tools for Working with Posterior Distributions'
  notes: Imports
  url: https://mc-stan.org/posterior/
  repository: https://CRAN.R-project.org/package=posterior
  authors:
  - family-names: Bürkner
    given-names: Paul-Christian
    email: [email protected]
  - family-names: Gabry
    given-names: Jonah
    email: [email protected]
  - family-names: Kay
    given-names: Matthew
    email: [email protected]
  - family-names: Vehtari
    given-names: Aki
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.posterior
- type: software
  title: sf
  abstract: 'sf: Simple Features for R'
  notes: Imports
  url: https://r-spatial.github.io/sf/
  repository: https://CRAN.R-project.org/package=sf
  authors:
  - family-names: Pebesma
    given-names: Edzer
    email: [email protected]
    orcid: https://orcid.org/0000-0001-8049-7069
  year: '2024'
  doi: 10.32614/CRAN.package.sf
  version: '>= 1.0'
- type: software
  title: stars
  abstract: 'stars: Spatiotemporal Arrays, Raster and Vector Data Cubes'
  notes: Imports
  url: https://r-spatial.github.io/stars/
  repository: https://CRAN.R-project.org/package=stars
  authors:
  - family-names: Pebesma
    given-names: Edzer
    email: [email protected]
    orcid: https://orcid.org/0000-0001-8049-7069
  year: '2024'
  doi: 10.32614/CRAN.package.stars
  version: '>= 0.5'
- type: software
  title: stats
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: terra
  abstract: 'terra: Spatial Data Analysis'
  notes: Imports
  url: https://rspatial.org/
  repository: https://CRAN.R-project.org/package=terra
  authors:
  - family-names: Hijmans
    given-names: Robert J.
    email: [email protected]
    orcid: https://orcid.org/0000-0001-5872-2872
  year: '2024'
  doi: 10.32614/CRAN.package.terra
  version: '>= 1.7-10'
- type: software
  title: tibble
  abstract: 'tibble: Simple Data Frames'
  notes: Imports
  url: https://tibble.tidyverse.org/
  repository: https://CRAN.R-project.org/package=tibble
  authors:
  - family-names: Müller
    given-names: Kirill
    email: [email protected]
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.tibble
  version: '>= 2.0.0'
- type: software
  title: uuid
  abstract: 'uuid: Tools for Generating and Handling of UUIDs'
  notes: Imports
  url: https://www.rforge.net/uuid
  repository: https://CRAN.R-project.org/package=uuid
  authors:
  - family-names: Urbanek
    given-names: Simon
    email: [email protected]
    orcid: https://orcid.org/0000-0003-2297-1732
  - family-names: Ts'o
    given-names: Theodore
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.uuid
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2024'
  version: '>= 4.1.0'
- type: software
  title: abind
  abstract: 'abind: Combine Multidimensional Arrays'
  notes: Suggests
  repository: https://CRAN.R-project.org/package=abind
  authors:
  - family-names: Plate
    given-names: Tony
    email: [email protected]
  - family-names: Heiberger
    given-names: Richard
  year: '2024'
  doi: 10.32614/CRAN.package.abind
- type: software
  title: BoomSpikeSlab
  abstract: 'BoomSpikeSlab: MCMC for Spike and Slab Regression'
  notes: Suggests
  repository: https://CRAN.R-project.org/package=BoomSpikeSlab
  authors:
  - family-names: Scott
    given-names: Steven L.
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.BoomSpikeSlab
  version: '>= 1.2.4'
- type: software
  title: Boruta
  abstract: 'Boruta: Wrapper Algorithm for All Relevant Feature Selection'
  notes: Suggests
  url: https://gitlab.com/mbq/Boruta/
  repository: https://CRAN.R-project.org/package=Boruta
  authors:
  - family-names: Kursa
    given-names: Miron Bartosz
    email: [email protected]
    orcid: https://orcid.org/0000-0001-7672-648X
  - family-names: Rudnicki
    given-names: Witold Remigiusz
  year: '2024'
  doi: 10.32614/CRAN.package.Boruta
- type: software
  title: covr
  abstract: 'covr: Test Coverage for Packages'
  notes: Suggests
  url: https://covr.r-lib.org
  repository: https://CRAN.R-project.org/package=covr
  authors:
  - family-names: Hester
    given-names: Jim
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.covr
- type: software
  title: cubelyr
  abstract: 'cubelyr: A Data Cube ''dplyr'' Backend'
  notes: Suggests
  url: https://github.com/hadley/cubelyr
  repository: https://CRAN.R-project.org/package=cubelyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.cubelyr
- type: software
  title: dbarts
  abstract: 'dbarts: Discrete Bayesian Additive Regression Trees Sampler'
  notes: Suggests
  url: https://github.com/vdorie/dbarts
  repository: https://CRAN.R-project.org/package=dbarts
  authors:
  - family-names: Dorie
    given-names: Vincent
    email: [email protected]
    orcid: https://orcid.org/0000-0002-9576-3064
  - family-names: Chipman
    given-names: Hugh
    email: [email protected]
  - family-names: McCulloch
    given-names: Robert
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.dbarts
  version: '>= 0.9-22'
- type: software
  title: deldir
  abstract: 'deldir: Delaunay Triangulation and Dirichlet (Voronoi) Tessellation'
  notes: Suggests
  repository: https://CRAN.R-project.org/package=deldir
  authors:
  - family-names: Turner
    given-names: Rolf
  year: '2024'
  doi: 10.32614/CRAN.package.deldir
- type: software
  title: ellipsis
  abstract: 'ellipsis: Tools for Working with ...'
  notes: Suggests
  url: https://ellipsis.r-lib.org
  repository: https://CRAN.R-project.org/package=ellipsis
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.ellipsis
- type: software
  title: glmnet
  abstract: 'glmnet: Lasso and Elastic-Net Regularized Generalized Linear Models'
  notes: Suggests
  url: https://glmnet.stanford.edu
  repository: https://CRAN.R-project.org/package=glmnet
  authors:
  - family-names: Friedman
    given-names: Jerome
  - family-names: Hastie
    given-names: Trevor
    email: [email protected]
  - family-names: Tibshirani
    given-names: Rob
  - family-names: Narasimhan
    given-names: Balasubramanian
  - family-names: Tay
    given-names: Kenneth
  - family-names: Simon
    given-names: Noah
  - family-names: Yang
    given-names: James
  year: '2024'
  doi: 10.32614/CRAN.package.glmnet
  version: '>= 4.1'
- type: software
  title: glmnetUtils
  abstract: 'glmnetUtils: Utilities for ''Glmnet'''
  notes: Suggests
  url: https://github.com/hongooi73/glmnetUtils
  repository: https://CRAN.R-project.org/package=glmnetUtils
  authors:
  - family-names: Ooi
    given-names: Hong
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.glmnetUtils
- type: software
  title: gnlm
  abstract: 'gnlm: Generalized Nonlinear Regression Models'
  notes: Suggests
  url: http://www.commanster.eu/rcode.html
  repository: https://CRAN.R-project.org/package=gnlm
  authors:
  - family-names: Swihart
    given-names: Bruce
    email: [email protected]
  - family-names: Lindsey
    given-names: Jim
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.gnlm
- type: software
  title: geosphere
  abstract: 'geosphere: Spherical Trigonometry'
  notes: Suggests
  url: https://github.com/rspatial/geosphere/issues/
  repository: https://CRAN.R-project.org/package=geosphere
  authors:
  - family-names: Hijmans
    given-names: Robert J.
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.geosphere
- type: software
  title: inlabru
  abstract: 'inlabru: Bayesian Latent Gaussian Modelling using INLA and Extensions'
  notes: Suggests
  url: http://www.inlabru.org
  repository: https://CRAN.R-project.org/package=inlabru
  authors:
  - family-names: Lindgren
    given-names: Finn
    email: [email protected]
    orcid: https://orcid.org/0000-0002-5833-2011
  - family-names: Bachl
    given-names: Fabian E.
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.inlabru
  version: '>= 2.10.0'
- type: software
  title: fmesher
  abstract: 'fmesher: Triangle Meshes and Related Geometry Tools'
  notes: Suggests
  url: https://inlabru-org.github.io/fmesher/
  repository: https://CRAN.R-project.org/package=fmesher
  authors:
  - family-names: Lindgren
    given-names: Finn
    email: [email protected]
    orcid: https://orcid.org/0000-0002-5833-2011
  year: '2024'
  doi: 10.32614/CRAN.package.fmesher
  version: '>= 0.1.7'
- type: software
  title: igraph
  abstract: 'igraph: Network Analysis and Visualization'
  notes: Suggests
  url: https://r.igraph.org/
  repository: https://CRAN.R-project.org/package=igraph
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: [email protected]
    orcid: https://orcid.org/0000-0001-7098-9676
  - family-names: Nepusz
    given-names: Tamás
    email: [email protected]
    orcid: https://orcid.org/0000-0002-1451-338X
  - family-names: Traag
    given-names: Vincent
    orcid: https://orcid.org/0000-0003-3170-3879
  - family-names: Horvát
    given-names: Szabolcs
    email: [email protected]
    orcid: https://orcid.org/0000-0002-3100-523X
  - family-names: Zanini
    given-names: Fabio
    email: [email protected]
    orcid: https://orcid.org/0000-0001-7097-8539
  - family-names: Noom
    given-names: Daniel
  - family-names: Müller
    given-names: Kirill
    email: [email protected]
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2024'
  doi: 10.32614/CRAN.package.igraph
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: [email protected]
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2024'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: mboost
  abstract: 'mboost: Model-Based Boosting'
  notes: Suggests
  url: https://github.com/boost-R/mboost
  repository: https://CRAN.R-project.org/package=mboost
  authors:
  - family-names: Hothorn
    given-names: Torsten
    email: [email protected]
    orcid: https://orcid.org/0000-0001-8301-0471
  - family-names: Buehlmann
    given-names: Peter
    orcid: https://orcid.org/0000-0002-1782-6015
  - family-names: Kneib
    given-names: Thomas
    orcid: https://orcid.org/0000-0003-3390-0972
  - family-names: Schmid
    given-names: Matthias
    orcid: https://orcid.org/0000-0002-0788-0317
  - family-names: Hofner
    given-names: Benjamin
    orcid: https://orcid.org/0000-0003-2810-3186
  year: '2024'
  doi: 10.32614/CRAN.package.mboost
- type: software
  title: modEvA
  abstract: 'modEvA: Model Evaluation and Analysis'
  notes: Suggests
  url: http://modeva.r-forge.r-project.org/
  repository: https://CRAN.R-project.org/package=modEvA
  authors:
  - family-names: A.M.
    given-names: Barbosa
  - family-names: J.A.
    given-names: Brown
  - family-names: A.
    given-names: Jimenez-Valverde
  - family-names: R.
    given-names: Real
  year: '2024'
  doi: 10.32614/CRAN.package.modEvA
- type: software
  title: matrixStats
  abstract: 'matrixStats: Functions that Apply to Rows and Columns of Matrices (and
    to Vectors)'
  notes: Suggests
  url: https://github.com/HenrikBengtsson/matrixStats
  repository: https://CRAN.R-project.org/package=matrixStats
  authors:
  - family-names: Bengtsson
    given-names: Henrik
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.matrixStats
- type: software
  title: ncmeta
  abstract: 'ncmeta: Straightforward ''NetCDF'' Metadata'
  notes: Suggests
  url: https://hypertidy.github.io/ncmeta/
  repository: https://CRAN.R-project.org/package=ncmeta
  authors:
  - family-names: Sumner
    given-names: Michael
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.ncmeta
- type: software
  title: progress
  abstract: 'progress: Terminal Progress Bars'
  notes: Suggests
  url: https://github.com/r-lib/progress#readme
  repository: https://CRAN.R-project.org/package=progress
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: [email protected]
  - family-names: FitzJohn
    given-names: Rich
  year: '2024'
  doi: 10.32614/CRAN.package.progress
- type: software
  title: pdp
  abstract: 'pdp: Partial Dependence Plots'
  notes: Suggests
  url: http://bgreenwell.github.io/pdp/
  repository: https://CRAN.R-project.org/package=pdp
  authors:
  - family-names: Greenwell
    given-names: Brandon M.
    email: [email protected]
    orcid: https://orcid.org/0000-0002-8120-0084
  year: '2024'
  doi: 10.32614/CRAN.package.pdp
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: [email protected]
  - family-names: Xie
    given-names: Yihui
    email: [email protected]
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: [email protected]
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: [email protected]
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: [email protected]
  - family-names: Atkins
    given-names: Aron
    email: [email protected]
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  - family-names: Cheng
    given-names: Joe
    email: [email protected]
  - family-names: Chang
    given-names: Winston
    email: [email protected]
  - family-names: Iannone
    given-names: Richard
    email: [email protected]
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2024'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: lubridate
  abstract: 'lubridate: Make Dealing with Dates a Little Easier'
  notes: Suggests
  url: https://lubridate.tidyverse.org
  repository: https://CRAN.R-project.org/package=lubridate
  authors:
  - family-names: Spinu
    given-names: Vitalie
    email: [email protected]
  - family-names: Grolemund
    given-names: Garrett
  - family-names: Wickham
    given-names: Hadley
  year: '2024'
  doi: 10.32614/CRAN.package.lubridate
  version: '>= 1.9.0'
- type: software
  title: rstan
  abstract: 'rstan: R Interface to Stan'
  notes: Suggests
  url: https://mc-stan.org/rstan/
  repository: https://CRAN.R-project.org/package=rstan
  authors:
  - family-names: Guo
    given-names: Jiqiang
    email: [email protected]
  - family-names: Gabry
    given-names: Jonah
    email: [email protected]
  - family-names: Goodrich
    given-names: Ben
    email: [email protected]
  - family-names: Johnson
    given-names: Andrew
    email: [email protected]
  - family-names: Weber
    given-names: Sebastian
    email: [email protected]
  - family-names: Badr
    given-names: Hamada S.
    email: [email protected]
    orcid: https://orcid.org/0000-0002-9808-2344
  year: '2024'
  doi: 10.32614/CRAN.package.rstan
  version: '>= 2.21.0'
- type: software
  title: rstantools
  abstract: 'rstantools: Tools for Developing R Packages Interfacing with ''Stan'''
  notes: Suggests
  url: https://mc-stan.org/rstantools/
  repository: https://CRAN.R-project.org/package=rstantools
  authors:
  - family-names: Gabry
    given-names: Jonah
    email: [email protected]
  - family-names: Goodrich
    given-names: Ben
    email: [email protected]
  - family-names: Lysy
    given-names: Martin
    email: [email protected]
  - family-names: Johnson
    given-names: Andrew
  year: '2024'
  doi: 10.32614/CRAN.package.rstantools
  version: '>= 2.1.1'
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
  title: xgboost
  abstract: 'xgboost: Extreme Gradient Boosting'
  notes: Suggests
  url: https://github.com/dmlc/xgboost
  repository: https://CRAN.R-project.org/package=xgboost
  authors:
  - family-names: Chen
    given-names: Tianqi
    email: [email protected]
  - family-names: He
    given-names: Tong
    email: [email protected]
  - family-names: Benesty
    given-names: Michael
    email: [email protected]
  - family-names: Khotilovich
    given-names: Vadim
    email: [email protected]
  - family-names: Tang
    given-names: Yuan
    email: [email protected]
    orcid: https://orcid.org/0000-0001-5243-233X
  - family-names: Cho
    given-names: Hyunsu
    email: [email protected]
  - family-names: Chen
    given-names: Kailong
  - family-names: Mitchell
    given-names: Rory
  - family-names: Cano
    given-names: Ignacio
  - family-names: Zhou
    given-names: Tianyi
  - family-names: Li
    given-names: Mu
  - family-names: Xie
    given-names: Junyuan
  - family-names: Lin
    given-names: Min
  - family-names: Geng
    given-names: Yifeng
  - family-names: Li
    given-names: Yutian
  - family-names: Yuan
    given-names: Jiaming
    email: [email protected]
  year: '2024'
  doi: 10.32614/CRAN.package.xgboost

Owner metadata

Name: IIASA
Login: iiasa
Email: [email protected]
Kind: organization
Description: International Institute for Applied Systems Analysis
Website: https://www.iiasa.ac.at
Location: Laxenburg, Austria
Twitter: IIASAVienna
Company:
Icon url: https://avatars.githubusercontent.com/u/15230149?v=4
Repositories: 128
Last ynced at: 2024-04-16T01:17:07.573Z
Profile URL: https://github.com/iiasa

GitHub Events

Total

Create event: 2
Issues event: 6
Release event: 1
Watch event: 2
Issue comment event: 11
Push event: 40
Pull request event: 1
Fork event: 2

Last Year

Create event: 2
Issues event: 6
Release event: 1
Watch event: 2
Issue comment event: 11
Push event: 40
Pull request event: 1
Fork event: 2

Committers metadata

Last synced: 6 days ago

Total Commits: 538
Total Committers: 6
Avg Commits per committer: 89.667
Development Distribution Score (DDS): 0.379

Commits in past year: 140
Committers in past year: 4
Avg Commits per committer in past year: 35.0
Development Distribution Score (DDS) in past year: 0.55

Name	Email	Commits
Martin Jung	m**g@z**m	334
mhesselbarth	m**h@g**m	100
Martin-Jung	M****g	65
HESSELBARTH Maximilian	h**h@i**t	21
Martin Jung	j**g@i**t	17
Jeff Hanson	j**n@u**u	1

Committer domains:

Issue and Pull Request metadata

Last synced: 2 days ago

Total issues: 86
Total pull requests: 52
Average time to close issues: 4 months
Average time to close pull requests: about 2 hours
Total issue authors: 10
Total pull request authors: 5
Average comments per issue: 2.28
Average comments per pull request: 0.42
Merged pull request: 48
Bot issues: 0
Bot pull requests: 0

Past year issues: 12
Past year pull requests: 5
Past year average time to close issues: 11 days
Past year average time to close pull requests: about 4 hours
Past year issue authors: 4
Past year pull request authors: 2
Past year average comments per issue: 1.33
Past year average comments per pull request: 0.0
Past year merged pull request: 5
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/iiasa/ibis.iSDM

Top Issue Authors

Martin-Jung (49)
mhesselbarth (15)
jeffreyhanson (10)
cwaldock1 (3)
Daviser95 (2)
simonrolph (2)
ManuelSpinola (2)
ChengchengZhang91 (1)
king0708 (1)
ggrittz (1)

Top Pull Request Authors

Martin-Jung (39)
mhesselbarth (10)
matthewlewis896 (1)
jeffreyhanson (1)
xiewei18 (1)

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Quality of life (14)
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Dependencies

.github/workflows/R-CMD-check.yaml actions

actions/checkout v3 composite
actions/upload-artifact main composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/Render-README.yaml actions

actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/codecov.yaml actions

actions/checkout v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action v4.4.1 composite
actions/checkout v3 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/update-citation-cff.yaml actions

actions/checkout v3 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

DESCRIPTION cran

R >= 4.0.0 depends
Rcpp >= 0.12.0 imports
RcppParallel >= 5.0.1 imports
assertthat >= 0.2.0 imports
doFuture >= 0.12.2 imports
foreach * imports
future >= 1.23.0 imports
geodist * imports
ggplot2 * imports
magrittr * imports
methods * imports
ncdf4 * imports
parallel * imports
posterior * imports
proto >= 1.0.0 imports
raster >= 3.4 imports
rgdal >= 1.5 imports
rgeos >= 0.5 imports
sf >= 0.9 imports
stars >= 0.5 imports
testthat >= 3.0.0 imports
tibble >= 2.0.0 imports
uuid * imports
BoomSpikeSlab >= 1.2.4 suggests
covr * suggests
dbarts >= 0.9 suggests
deldir * suggests
doParallel * suggests
ellipsis * suggests
knitr * suggests
mboost * suggests
modEvA * suggests
progress * suggests
rmarkdown * suggests
rstan >= 2.21.0 suggests
rstantools >= 2.1.1 suggests
xgboost * suggests

Score: 5.3471075307174685

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