Categories - Biosphere - Species Distribution Modeling

Topics

species-distribution-modelling, biogeography, niche-modelling, species-distribution-modeling, niche-modeling, species-sensitivity-distribution, ecological-niche-modelling, scenarios, spatial-grain, spatial-predictions, bioclim, chelsa, earthenv, adaptive-spatio-temporal-exploratory-model, bird-survey, movement, ornithology, spatio-temporal-analysis, spatiotemporal-dynamics, tidymodels, ecological-niche-modeling, poisson-process, integrated-framework, spatially-structured-validation, spatial-ecology, model-tuning, model-fit-for-purpose, ensemble-modelling, tmb, glmm, water-quality-guideline, ssd, tunning, maxent-models, enmeval, maxent,

Projects

Wallace

A modular platform for reproducible modeling of species niches and distributions, written in R.

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 18.2

sdmTMB

An R package that fits spatial and spatiotemporal predictive-processes for species distribution models.

ecology glmm r spatial-analysis species-distribution-modelling tmb

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 16.2

A computer platform for ensemble forecasting of species distributions, enabling the treatment of a range of methodological uncertainties in models and the examination of species-environment relationships.

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 16.1

ENMeval

R package for automated runs and evaluations of ecological niche models.

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 14.8

ssdtools

An R package to fit and plot Species Sensitivity Distributions, cumulative probability distributions which are fitted to toxicity concentrations for different species.

ecotoxicology env rstats species-sensitivity-distribution

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 13.7

PointedSDMs

Simplify the construction of integrated species distribution models (ISDMs) for large collections of heterogeneous data.

Biosphere - Species Distribution Modeling - Last synced: 26 Apr 2025 - Ranking: 13.0

SSDM

A package to map species richness and endemism based on stacked species distribution models.

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 12.2

tidysdm

A Species Distribution Models in R.

r species-distribution-modelling tidymodels

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 12.0

spOccupancy

Fits single-species, multi-species, and integrated spatial occupancy models using Markov Chain Monte Carlo.

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 11.7

elapid

Species distribution modeling tools, including a python implementation of Maxent.

biodiversity-informatics biogeography geospatial maxent niche-modelling species-distribution-modelling

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 11.6

stemflow

A toolkit for Adaptive Spatio-Temporal Exploratory Model in Python using daily abundance estimation using eBird citizen science data.

adaptive-spatio-temporal-exploratory-model animal animal-movement big-data biodiversity biogeography bird-migration bird-survey ebird ecology ecology-modelling geospatial machine-learning movement movement-ecology ornithology spatio-temporal-analysis spatiotemporal spatiotemporal-dynamics species-distribution-modeling

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 11.0

enmSdmX

A set of tools in R for implementing species distribution models and ecological niche models.

bias-correction biogeography ecological-niche-modeling ecological-niche-modelling niche-modeling niche-modelling species-distribution-modeling

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 10.3

SpeciesDistributionToolkit

A collection of Julia packages forming a toolkit meant to deal with species distribution data.

bioclim biodiversity biogeography chelsa earthenv ecology species-distribution-models

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 10.3

ENMTools

This package implements various tests, visualizations, and metrics for use with environmental niche models (ENMs) and species distribution models (SDMs).

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 7.4

flexsdm

Useful tools for constructing species distribution models.

ecological-niche-modelling ensemble-modelling model-fit-for-purpose model-tuning spatial-ecology spatially-structured-validation species-distribution-modelling

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 5.9

ibis.iSDM

Provides a series of convenience functions to fit integrated Species Distribution Models.

bayesian biodiversity integrated-framework poisson-process scenarios sdm spatial-grain spatial-predictions species-distribution-modelling

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 5.3

shinyssdtools

A Shiny application for fitting species sensitivity distribution, a method for getting water quality benchmarks to characterize effects of chemical contaminants for water quality or ecological risk assessment.

env species-sensitivity-distribution ssd water-quality-guideline

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 4.8

ENMwizard

Advanced Techniques for Ecological Niche Modeling Made Easy.

enmeval maxent-models niche-modeling rasters species tunning

Biosphere - Species Distribution Modeling - Last synced: 27 Apr 2025 - Ranking: 3.9

Contributors

Rekyt [email protected]

OST Projects: 25
Categories: Biosphere, Natural Resources, Sustainable Development
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity Data Access and Management, Biodiversity and Species Distribution, Education, Plants and Vegetation, Soil and Land, Species Distribution Modeling
Topics: biodiversity, biology, darwincore, nomenclature, taxize, taxonomy, landscape-ecology, landscape-metrics, bien, botanical and 72 more

Darío Hereñú [email protected]

OST Projects: 14
Categories: Biosphere, Climate Change, Consumption, Emissions, Energy Systems, Hydrosphere, Natural Resources, Sustainable Development
Sub Categories: Agriculture and Nutrition, Biodiversity and Species Distribution, Carbon Intensity and Accounting, Climate Data Access and Visualization, Coastal and Reefs, Education, Energy Modeling and Optimization, Energy System Modeling Frameworks, Forest Modeling and Analysis, Forest Observation and Management, Soil and Land, Species Distribution Modeling, Terrestrial Animals, Terrestrial Wildlife
Topics: cds, climate-data, copernicus, ecmwf-api, ecmwf-services, nasis, nrcs, soil, soil-survey, usda and 623 more

doserjef [email protected]

OST Projects: 13
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Forest Observation and Management, Species Distribution Modeling
Topics: compute-estimates, fia, fia-database, fia-datamart, forest-inventory, forest-variables, inventories, space-time

patchcervan [email protected]

OST Projects: 11
Categories: Biosphere
Sub Categories: Avian Monitoring and Analysis, Biodiversity and Species Distribution, Species Distribution Modeling, Terrestrial Animals
Topics:

Jeff Doser [email protected]

OST Projects: 10
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Species Distribution Modeling
Topics:

Daniel S. Katz [email protected]

OST Projects: 10
Categories: Biosphere, Climate Change, Energy Storage, Energy Systems, Natural Resources, Renewable Energy
Sub Categories: Battery, Biodiversity and Species Distribution, Climate Data Processing and Analysis, Conservation and Restoration, Earth and Climate Modeling, Energy Distribution and Grids, Energy Modeling and Optimization, Grid Analysis and Planning, Photovoltaics and Solar Energy, Species Distribution Modeling, Water Supply, Water Supply and Quality
Topics: biodiversity-scenario, co2-emissions, deforestation, deforestation-risk, forest-cover-change, ipbes, ipcc, land-use-change, protected-areas, redd and 215 more

Christoph Heibl [email protected]

OST Projects: 10
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Species Distribution Modeling
Topics:

stephhazlitt [email protected]

OST Projects: 6
Categories: Biosphere, Emissions, Natural Resources
Sub Categories: Emission Observation and Modeling, Species Distribution Modeling, Water Supply, Water Supply and Quality
Topics: soe, climate, shinyapps, citz, flnr, spatial-data, wfs, wfs-urls, ecotoxicology, species-sensitivity-distribution

kellijohnson-NOAA [email protected]

OST Projects: 6
Categories: Atmosphere, Biosphere
Sub Categories: Biodiversity and Species Distribution, Marine Life and Fishery, Meteorological Observation and Forecast, Species Distribution Modeling
Topics: fisheries, fisheries-stock-assessment, stock-synthesis, ecology, glmm, spatial-analysis, species-distribution-modelling, tmb, noaa, noaa-fisheries and 9 more

Andy Teucher [email protected]

OST Projects: 6
Categories: Biosphere, Emissions, Natural Resources
Sub Categories: Emission Observation and Modeling, Species Distribution Modeling, Water Supply, Water Supply and Quality
Topics: soe, citz, flnr, ascii-art, date-time, web-mapping, species-sensitivity-distribution, ssd, water-quality-guideline

Jeffrey Hanson [email protected]

OST Projects: 5
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Conservation and Restoration, Species Distribution Modeling
Topics: biodiversity, conservation, protected-areas, conservation-planner, prioritization, integrated-framework, poisson-process, scenarios, sdm, spatial-grain and 41 more

ibarraespinosa [email protected]

OST Projects: 5
Categories: Biosphere, Climate Change, Emissions
Sub Categories: Earth and Climate Modeling, Emission Observation and Modeling, Species Distribution Modeling
Topics: atmospheric-models, atmospheric-science, emissions, exporting-emissions, wrf, atmos, atmospheric-chemistry, atmospheric-modelling, wrf-chem, meteorological-data and 2 more

Hadley Wickham [email protected]

OST Projects: 5
Categories: Atmosphere, Biosphere, Natural Resources, Sustainable Development
Sub Categories: Air Quality, Avian Monitoring and Analysis, Forest Modeling and Analysis, Forest Observation and Management, Meteorological Observation and Forecast, Species Distribution Modeling, Sustainable Investment, Terrestrial Animals
Topics: global, met-data, abundance, demography, dynamic, dynamics, ecology, fgeo, forestgeo, forests and 124 more

Anshul Singhvi [email protected]

OST Projects: 4
Categories: Atmosphere, Biosphere, Hydrosphere, Sustainable Development
Sub Categories: Atmospheric Composition and Dynamics, Education, Ocean Models, Species Distribution Modeling
Topics: arrays, gdal, geo, geospatial-data, geospatial-processing, geospatial-visualization, rasterization, cost, dtm, friction and 34 more

Rafael Schouten [email protected]

OST Projects: 4
Categories: Biosphere, Consumption
Sub Categories: Agriculture and Nutrition, Biodiversity and Species Distribution, Ecological and Environmental Modeling, Plants and Vegetation, Species Distribution Modeling
Topics: bioclim, biodiversity, biogeography, chelsa, earthenv, ecology, species-distribution-models, demography, dynamic, evolution and 67 more

Florian de Boissieu [email protected]

OST Projects: 4
Categories: Biosphere, Sustainable Development
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity and Species Distribution, Environmental Satellites, Forest Observation and Management, Forest Remote Sensing, Species Distribution Modeling
Topics: cosmo-skymed, earth-observation, geopandas, iceye, maxar, planetscope, pleiades, radarsat, rasterio, saocom and 36 more

Joe Thorley [email protected]

OST Projects: 4
Categories: Biosphere, Natural Resources
Sub Categories: Species Distribution Modeling, Water Supply, Water Supply and Quality
Topics: gdal, geos, proj, auth0, shiny, fish, kootenay-lake, bc, ecotoxicology, species-sensitivity-distribution and 4 more

Bruno Vilela de Moraes e Silva [email protected]

OST Projects: 4
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity Data Access and Management, Biodiversity Data Cleaning and Standardization, Biodiversity and Species Distribution, Species Distribution Modeling
Topics: conservation, conservation-prioritization

mhesselbarth [email protected]

OST Projects: 3
Categories: Biosphere, Natural Resources
Sub Categories: Biodiversity Data Cleaning and Standardization, Biodiversity and Species Distribution, Soil and Land, Species Distribution Modeling
Topics: biodiversity, integrated-framework, poisson-process, scenarios, sdm, spatial-grain, spatial-predictions, species-distribution-modelling, landscape-ecology, neutral-landscape-model and 4 more

Nan-Hung Hsieh [email protected]

OST Projects: 3
Categories: Biosphere, Hydrosphere, Natural Resources
Sub Categories: Air Quality, Freshwater and Hydrology, Species Distribution Modeling
Topics: dae, dde, delay-differential-equations, differential-algebraic-equations, differential-equations, ode, ordinary-differential-equations, sciml, sde, stochastic-differential-equations and 2 more

Seb Dalgarno [email protected]

OST Projects: 3
Categories: Biosphere, Natural Resources
Sub Categories: Species Distribution Modeling, Water Supply, Water Supply and Quality
Topics: species-sensitivity-distribution, ssd, water-quality-guideline, ecotoxicology

Ayla Pearson [email protected]

Ben Bolker [email protected]

OST Projects: 3
Categories: Biosphere, Sustainable Development
Sub Categories: Biodiversity and Species Distribution, Education, Species Distribution Modeling
Topics: ecology, glmm, spatial-analysis, species-distribution-modelling, tmb, carpentries, data-carpentry, data-wrangling, english, lesson and 36 more

rhijmans [email protected]

OST Projects: 3
Categories: Biosphere, Consumption
Sub Categories: Agriculture and Nutrition, Biodiversity and Species Distribution, Forest Observation and Management, Forest Remote Sensing, Species Distribution Modeling
Topics: administrative-boundaries, ccaa, gisco, ign, municipalities, provinces, ropenspain, spain, static-tiles, gdal and 4 more

Santiago Velazco [email protected]

OST Projects: 3
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity Data Cleaning and Standardization, Biodiversity and Species Distribution, Species Distribution Modeling
Topics: ecological-niche-modelling, ensemble-modelling, model-fit-for-purpose, model-tuning, spatial-ecology, spatially-structured-validation, species-distribution-modelling, bdc, biodiversity-data, distribution and 1 more

Jillian Dunic [email protected]

OST Projects: 3
Categories: Biosphere, Climate Change, Sustainable Development
Sub Categories: Biodiversity and Species Distribution, Climate Data Access and Visualization, Education, Species Distribution Modeling
Topics: ecology, glmm, spatial-analysis, species-distribution-modelling, tmb, climate, noaa, noaa-data, carpentries, data-carpentry and 11 more

ndimhypervol [email protected]

OST Projects: 3
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Species Distribution Modeling
Topics: ecological-metadata-language, ecological-modelling, ecological-models, ecology, species-distribution-modelling, species-distributions, distribution, species, biodiversity-data, biodiversity-informatics and 5 more

Sean Anderson [email protected]

OST Projects: 3
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Marine Life and Fishery, Species Distribution Modeling
Topics: fisheries, fisheries-stock-assessment, stock-synthesis, ecology, glmm, spatial-analysis, species-distribution-modelling, tmb, extremes, spatiotemporal

sjevelazco [email protected]

John Baumgartner [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity Data Cleaning and Standardization, Biodiversity and Species Distribution, Species Distribution Modeling
Topics: ecology, habitat-suitability, maxent, sdm, leaflet-map

Lewis Barnett [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Marine Life and Fishery, Species Distribution Modeling
Topics: climate, ecosystem-status-report, environmental-data, ecology, glmm, spatial-analysis, species-distribution-modelling, tmb

Andre Felipe Alves de Andrade [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity and Species Distribution, Species Distribution Modeling
Topics: ecological-niche-modelling, ensemble-modelling, model-fit-for-purpose, model-tuning, spatial-ecology, spatially-structured-validation, species-distribution-modelling

Nadine Hussein [email protected]

OST Projects: 2
Categories: Biosphere, Natural Resources
Sub Categories: Species Distribution Modeling, Water Supply and Quality
Topics: fish, kootenay-lake, bc, ecotoxicology, species-sensitivity-distribution, ssd, water-quality-guideline

atillmanns [email protected]

OST Projects: 2
Categories: Biosphere, Natural Resources
Sub Categories: Species Distribution Modeling, Water Supply and Quality
Topics: ecotoxicology, species-sensitivity-distribution, ssd, water-quality-guideline

Angeline Tillmanns [email protected]

Adam B. Smith [email protected]

OST Projects: 2
Categories: Biosphere, Climate Change
Sub Categories: Biodiversity and Species Distribution, Climate Data Access and Visualization, Species Distribution Modeling
Topics: bias-correction, biogeography, ecological-niche-modeling, ecological-niche-modelling, niche-modeling, niche-modelling, species-distribution-modeling, climate-change, deforestation, deforestation-model and 42 more

Seb Dalgarno [email protected]

Dimitri Justeau [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Conservation and Restoration, Species Distribution Modeling
Topics: constraint-optimisation-problem, constraint-programming, constraint-satisfaction-problem, constraint-solver, constraints, copr, csp

Peter Galante [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Species Distribution Modeling
Topics:

SaraVarela [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity and Species Distribution, Species Distribution Modeling
Topics: environmental-variable, niche-modelling, species-distribution-modelling

Pgalante [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Species Distribution Modeling
Topics:

Eric Ward [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Marine Life and Fishery, Species Distribution Modeling
Topics: ecology, glmm, spatial-analysis, species-distribution-modelling, tmb, extremes, spatiotemporal, ecological-modelling, dlm, stan

Michael Krabbe Borregaard [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity and Species Distribution, Species Distribution Modeling
Topics: bioclim, biodiversity, biogeography, chelsa, earthenv, ecology, species-distribution-models, diversity-measurement, partitioning-diversity, phylogenetic-diversity and 40 more

chenyangkang [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Avian Monitoring and Analysis, Species Distribution Modeling
Topics: codeml, ecology, molecular-evolution, natural-selection, paml, selection, adaptive-spatio-temporal-exploratory-model, animal, animal-movement, biodiversity and 14 more

Ayla Pearson [email protected]

OST Projects: 2
Categories: Biosphere, Natural Resources
Sub Categories: Species Distribution Modeling, Water Supply and Quality
Topics: fish, kootenay-lake, species-sensitivity-distribution, ssd, water-quality-guideline

Gonzalo [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Species Distribution Modeling
Topics: biodiversity-data, biodiversity-informatics, biodiversity-standards, citations, museum-collection-specimens, museum-collections, museum-metadata

Jamie M. Kass [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Species Distribution Modeling
Topics:

Bruno Vilela [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics, Biodiversity and Species Distribution, Species Distribution Modeling
Topics:

Watson [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Marine Life and Fishery, Species Distribution Modeling
Topics: ecology, glmm, spatial-analysis, species-distribution-modelling, tmb

salo [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Conservation and Restoration, Forest Observation and Management, Species Distribution Modeling
Topics: california, ecology, wildfire, biodiversity-informatics, biogeography, maxent, niche-modelling, species-distribution-modelling, earth-observation, earth-science

Dean Attali [email protected]

OST Projects: 2
Categories: Biosphere, Sustainable Development
Sub Categories: Biodiversity and Species Distribution, Education, Species Distribution Modeling
Topics: software-engineering, sustainability, participatory-experiments, behaviour, biology, ecoloy, labpage, ljmu, research, knitr and 83 more

Martin Jung [email protected]

OST Projects: 2
Categories: Biosphere, Sustainable Development
Sub Categories: Biodiversity and Species Distribution, Education, Species Distribution Modeling
Topics: biodiversity, integrated-framework, poisson-process, scenarios, sdm, spatial-grain, spatial-predictions, species-distribution-modelling, spatial-analysis, bfast and 43 more

Chris Grandin [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Marine Life and Fishery, Species Distribution Modeling
Topics: fisheries, fisheries-stock-assessment, stock-synthesis, ecology, glmm, spatial-analysis, species-distribution-modelling, tmb

Timothée Poisot [email protected]

OST Projects: 2
Categories: Biosphere, Sustainable Development
Sub Categories: Biodiversity and Species Distribution, Education, Species Distribution Modeling
Topics: bioclim, biodiversity, biogeography, chelsa, earthenv, ecology, species-distribution-models, carpentries, data-carpentry, data-wrangling and 47 more

Gonzalo E. Pinilla-Buitrago [email protected]

OST Projects: 2
Categories: Biosphere
Sub Categories: Biodiversity and Species Distribution, Species Distribution Modeling
Topics: distribution, species