ibis.iSDM - v0.1.7

What's Changed

• Dev 0.17 bump by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/151

New features

• Implementation of small ensemble of models for linear engines (add_control_esm()) #141

Minor improvements and bug fixes

• Raise informative error if bias layer has negative values. #148
• Update engine_xgboost() to work with latest development build and remove [pdp] as dependency #149
• Improvement of document grammar and readability. Few more vignette examples based on latest development.
• 🐛 Fixing of engine_inlabru() to work with latest version #150 #145
• 🐛 Fixes to add_control_bias() to have it working again.
• 🐛 Refactor code to avoid importing namespaces #95

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.1.6...v0.1.7

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung 4 months ago

ibis.iSDM - v0.1.6

What's Changed

This PR integrates a series of refactors and enhancements to improve messaging, error handling, and background creation across multiple engine and class files, and it adds support for data.frame predictors.

• Centralizes creation of background rasters via create_background(x) to reduce duplication.
• Replaces stop()/warning() calls with cli::cli_abort() and cli::cli_alert_warning() for consistent messaging.
• Adds support for data.frame predictors and expands documentation for predictor processing.

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.1.5...v0.1.6

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung about 1 year ago

ibis.iSDM - v0.1.5

What's Changed in version 0.1.5

New features
New visualization function nicheplot() to visualize suitability across 2 axes #87.
Support for 'modal' value calculations in ensemble().
Support for 'superlearner' in ensemble().
Support for 'kmeans' derived threshold calculation in threshold() and predictor_derivate().
Support for future processing streamlined. See FAQ section for instructions #18.

Minor improvements and bug fixes
Now overwriting temporary data by default in predictor_transform() and similar functions.
Minor 🐛 fix related to misaligned thresholds and negative exponential kernels.
🔥 🐛 fix for scenario projections that use different grain sizes than for inference.

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.1.4...v0.1.5

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung over 1 year ago

ibis.iSDM - v0.1.4

What's Changed

• Improved factor handling by @mhesselbarth in https://github.com/iiasa/ibis.iSDM/pull/128
• Version bump by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/132

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.1.3...v0.1.4

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung almost 2 years ago

ibis.iSDM - v0.1.3

What's Changed

• Cln docs by @mhesselbarth in https://github.com/iiasa/ibis.iSDM/pull/85
• Changing class and objects to R6 throughout by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/88
• Updating master with dev by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/97
• Master back to dev by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/98
• Merge back so as that commit history is identical by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/99
• Merge pull request #99 from iiasa/dev by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/100
• Fix clamp by @jeffreyhanson in https://github.com/iiasa/ibis.iSDM/pull/103
• Adding engine_scampr to the package by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/107
• Prior fixes by @mhesselbarth in https://github.com/iiasa/ibis.iSDM/pull/112
• Merging scenario fixes #113, threshold constraints and dispersal corrections by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/114
• project for method_integration = "predictor" by @mhesselbarth in https://github.com/iiasa/ibis.iSDM/pull/119
• Dev to master for 0.1.3 version bump by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/126

New Contributors

• @jeffreyhanson made their first contribution in https://github.com/iiasa/ibis.iSDM/pull/103

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.1.1...v0.1.3

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung about 2 years ago

ibis.iSDM - Version 0.1.1

What's Changed

• Merging 0.1 dev branch to main by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/79
• Before christmas version push by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/83

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.0.9...v0.1.1

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung over 2 years ago

ibis.iSDM - v0.0.9

What's Changed

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.0.7...v0.0.9

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung almost 3 years ago

ibis.iSDM - Version 0.0.7

What's Changed

• Update to version 0.0.5 (#53) by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/54
• Small bugfix related to ensemble and min/max of terra by @mhesselbarth in https://github.com/iiasa/ibis.iSDM/pull/55
• Dev by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/59
• Merge version 0.0.7 in by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/61

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.0.6...v0.0.7

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung almost 3 years ago

ibis.iSDM - Version 0.0.6

What's Changed

• Dev by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/58

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.0.5...v0.0.6

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung almost 3 years ago

ibis.iSDM - Version 0.0.5

What's Changed

• See Changelog. Most critical change is the transition from raster to terra throughout. If this new version breaks your established code, use the old one.

Details:

• Fix check by @mhesselbarth in https://github.com/iiasa/ibis.iSDM/pull/42
• Fix check by @mhesselbarth in https://github.com/iiasa/ibis.iSDM/pull/43
• Merge terra branch into dev by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/49
• Update to version 0.0.5 by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/53

Full Changelog: https://github.com/iiasa/ibis.iSDM/compare/v0.0.3...v0.0.5

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung about 3 years ago

ibis.iSDM - Release version 0.0.3

Release version 0.0.3

Accompanied with the manuscript published in Ecological Informatics.

What's Changed

• Feeding initial docs back to master by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/15
• Merge inlabru into main. Working it seems by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/20
• Stanengine dev by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/22
• Docs by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/23
• Latest docs by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/24
• Remove travis and change workflow branch by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/26
• Docs merge by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/27
• Import from dev recent changes by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/33
• Dev by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/34
• Gh actions by @mhesselbarth in https://github.com/iiasa/ibis.iSDM/pull/35
• Gh actions by @mhesselbarth in https://github.com/iiasa/ibis.iSDM/pull/36
• Release of version 0.0.2 by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/39
• Merging current development branch into main by @Martin-Jung in https://github.com/iiasa/ibis.iSDM/pull/46

Full Changelog: https://github.com/iiasa/ibis.iSDM/commits/v0.0.3

Biosphere - Species Distribution Modeling - R
Published by Martin-Jung about 3 years ago