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Please use this file for any edits --\u003e\n\n```{r, echo = FALSE, include = FALSE}\nknitr::opts_chunk$set(\n  collapse = TRUE,\n  comment = \"#\u003e\"\n)\n```\n\n# The ibis framework - An **I**ntegrated model for **B**iod**I**versity distribution projection**S**\n\n\u003cimg align=\"right\" src=\"man/figures/logo.png\" alt=\"logo\" width=\"180\" height = \"180\"\u003e\n\n\u003c!-- https://shields.io/  For Badges later --\u003e\n\u003c!-- badges: start --\u003e\n[![Lifecycle](https://img.shields.io/badge/lifecycle-experimental-orange.svg)](https://lifecycle.r-lib.org/articles/stages.html#experimental)\n[![r-cmd-check](https://github.com/iiasa/ibis.iSDM/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/iiasa/ibis.iSDM/actions/workflows/R-CMD-check.yaml)\n[![License: CC BY 4.0](https://img.shields.io/badge/license-CC BY 4.0-blue.svg)](https://creativecommons.org/licenses/by/4.0/)\n[![Codecov Status](https://codecov.io/gh/iiasa/ibis.iSDM/branch/master/graph/badge.svg)](https://app.codecov.io/gh/iiasa/ibis.iSDM?branch=master)\n[![Published in](https://img.shields.io/badge/Ecological_Informatics-green?style=plastic\u0026label=Published%20in\u0026link=https%3A%2F%2Fdoi.org%2F10.1016%2Fj.ecoinf.2023.102127)](https://doi.org/10.1016/j.ecoinf.2023.102127)\n[![ibis.iSDM status badge](https://iiasa.r-universe.dev/badges/ibis.iSDM)](https://iiasa.r-universe.dev/ibis.iSDM)\n[![CRAN status](https://www.r-pkg.org/badges/version/ibis.iSDM)](https://CRAN.R-project.org/package=ibis.iSDM)\n\u003c!-- badges: end --\u003e\n  \nThe **ibis.iSDM** package provides a series of convenience functions to fit integrated Species Distribution Models (iSDMs). With integrated models we generally refer to SDMs that incorporate information from different biodiversity datasets, external parameters such as priors or offsets with respect to certain variables and regions. See [Fletcher et al. (2019)](https://doi.org/10.1002/ecy.2710) and [Isaac et al. (2020)](https://linkinghub.elsevier.com/retrieve/pii/S0169534719302551) for an introduction to iSDMs.\n\n## Installation\n\nThe latest version can be installed from GitHub. A CRAN release is planned, but \nin the meantime the package can be found on R-universe as well.\n\n```{r gh-installation, eval = FALSE, message=FALSE}\n# For installation (Not yet done)\ninstall.packages(\"ibis.iSDM\", repos = \"https://iiasa.r-universe.dev\")\n\n# For Installation directly from github\ninstall.packages(\"remotes\")\nremotes::install_github(\"IIASA/ibis.iSDM\")\n```\n\n## Basic usage\n\nSee relevant [reference site](https://iiasa.github.io/ibis.iSDM/) and [articles](https://iiasa.github.io/ibis.iSDM/articles/01_train_simple_model.html).\n\nNote that the package is in active development and parameters of some functions might change.\n\n**Citation:**\n\nJung, Martin. 2023. “An Integrated Species Distribution Modelling Framework for Heterogeneous Biodiversity Data.” Ecological Informatics, 102127, [DOI](https://doi.org/10.1016/j.ecoinf.2023.102127)\n\n\n## Acknowledgement \u003ca href=\"https://iiasa.ac.at\"\u003e\u003cimg src=\"man/figures/iiasa_logo_blue.png\" alt=\"IIASA\" align=\"right\" width=\"300\"/\u003e\u003c/a\u003e\n\n**ibis.iSDM** is developed and maintained by the Biodiversity, Ecology and Conservation group at the International Institute for Applied Systems Analysis (IIASA), Austria.\n\n## Contributors\n\n\n\u003c!-- ALL-CONTRIBUTORS-LIST:START - Do not remove or modify this section --\u003e\n\u003c!-- prettier-ignore-start --\u003e\n\u003c!-- markdownlint-disable --\u003e\n\nAll contributions to this project are gratefully acknowledged using the [`allcontributors` package](https://github.com/ropenscilabs/allcontributors) following the [all-contributors](https://allcontributors.org) specification. Contributions of any kind are welcome!\n\n\u003ctable\u003e\n\n\u003ctr\u003e\n\u003ctd align=\"center\"\u003e\n\u003ca href=\"https://github.com/Martin-Jung\"\u003e\n\u003cimg src=\"https://avatars.githubusercontent.com/u/3788377?v=4\" width=\"100px;\" alt=\"\"/\u003e\n\u003c/a\u003e\u003cbr\u003e\n\u003ca href=\"https://github.com/iiasa/ibis.iSDM/commits?author=Martin-Jung\"\u003eMartin-Jung\u003c/a\u003e\n\u003c/td\u003e\n\u003ctd align=\"center\"\u003e\n\u003ca href=\"https://github.com/mhesselbarth\"\u003e\n\u003cimg src=\"https://avatars.githubusercontent.com/u/29225293?v=4\" width=\"100px;\" alt=\"\"/\u003e\n\u003c/a\u003e\u003cbr\u003e\n\u003ca href=\"https://github.com/iiasa/ibis.iSDM/commits?author=mhesselbarth\"\u003emhesselbarth\u003c/a\u003e\n\u003c/td\u003e\n\u003ctd align=\"center\"\u003e\n\u003ca href=\"https://github.com/jeffreyhanson\"\u003e\n\u003cimg src=\"https://avatars.githubusercontent.com/u/3610005?v=4\" width=\"100px;\" alt=\"\"/\u003e\n\u003c/a\u003e\u003cbr\u003e\n\u003ca href=\"https://github.com/iiasa/ibis.iSDM/commits?author=jeffreyhanson\"\u003ejeffreyhanson\u003c/a\u003e\n\u003c/td\u003e\n\u003c/tr\u003e\n\n\u003c/table\u003e\n\n\u003c!-- markdownlint-enable --\u003e\n\u003c!-- prettier-ignore-end --\u003e\n\u003c!-- ALL-CONTRIBUTORS-LIST:END --\u003e\n\n\n","funding_links":[],"readme_doi_urls":["https://doi.org/10.1016/j.ecoinf.2023.102127","https://doi.org/10.1002/ecy.2710"],"works":{},"citation_counts":{},"total_citations":0,"keywords_from_contributors":["spatial-analysis"],"project_url":"https://ost.ecosyste.ms/api/v1/projects/12331","html_url":"https://ost.ecosyste.ms/projects/12331"}