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Open Sustainable Technology

https://github.com/bihealth/vcfpy

Python 3 library with good support for both reading and writing VCF
bioinformatics file-format parsing vcf writing
Added: over 1 year ago - Last Synced: 11 months ago - Created: September 15, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 209
  • Committers: 8
  • Issues: 30
  • Pull Requests: 86
  • Owner: bihealth
  • Stars: 87
  • Forks: 18
  • Packages: 1
  • Downloads: 4,901
https://github.com/chrovis/cljam

A DNA Sequence Alignment/Map (SAM) library for Clojure
2bit bam bcf bed bigwig bioinformatics clojure fasta fastq genomics gff sam vcf wig
Added: over 1 year ago - Last Synced: 11 months ago - Created: January 08, 2014

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Clojure
  • Commits: 1270
  • Committers: 17
  • Issues: 17
  • Pull Requests: 125
  • Owner: chrovis
  • Stars: 88
  • Forks: 12
  • Packages: 1
  • Downloads: 17,635
https://github.com/brentp/cyvcf2

cython + htslib == fast VCF and BCF processing
bioinformatics cython genomics htslib vcf
Added: over 1 year ago - Last Synced: 11 months ago - Created: August 12, 2015

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Cython
  • Commits: 461
  • Committers: 42
  • Issues: 96
  • Pull Requests: 50
  • Owner: brentp
  • Stars: 357
  • Forks: 71
  • Packages: 3
  • Downloads: 86,704