https://github.com/rickgelhausen/hribo
We present HRIBO (High-throughput annotation by Ribo-seq), a workflow to enable reproducible and high-throughput analysis of bacterial Ribo-seq data. The workflow performs all required pre-processing steps and quality control. Importantly, HRIBO outputs annotation-independent ORF predictions based on two complementary prokaryotic-focused tools, and integrates them with additional computed features. This facilitates both the rapid discovery of ORFs and their prioritization for functional characterization.
bioinformatics
prokaryotes
ribosome-profiling
snakemake
Added: over 1 year ago - Last Synced: 11 months ago
- Created: August 30, 2018
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- Main Language: Python
- Commits: 752
- Committers: 6
- Issues: 29
- Pull Requests: 26
- Owner: RickGelhausen
- Stars: 8
- Forks: 3
- Packages: 1
- Downloads: 9
