BioTIMEr
Global database of assemblage time series for quantifying and understanding biodiversity change.
https://github.com/biotimehub/biotimer
Category: Biosphere
Sub Category: Biodiversity Analysis and Metrics
Keywords
ecology geospatial r r-package rstats
Last synced: about 24 hours ago
JSON representation
Repository metadata
BioTIME package
- Host: GitHub
- URL: https://github.com/biotimehub/biotimer
- Owner: bioTIMEHub
- License: other
- Created: 2023-08-10T11:15:22.000Z (over 2 years ago)
- Default Branch: main
- Last Pushed: 2025-12-21T14:21:11.000Z (21 days ago)
- Last Synced: 2025-12-29T00:07:57.577Z (14 days ago)
- Topics: ecology, geospatial, r, r-package, rstats
- Language: R
- Homepage: https://biotimehub.github.io/BioTIMEr/
- Size: 32.8 MB
- Stars: 10
- Watchers: 4
- Forks: 2
- Open Issues: 3
- Releases: 6
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- License: LICENSE
- Codemeta: codemeta.json
README.md
BioTIMEr
BioTIMEr is an R package which gives you functions to work with BioTIME communities and provides an subset of the BioTIME database.
BioTIME (the Global database of assemblage time series for quantifying and
understanding biodiversity change) is an international network and an open access
database, free to anyone, anywhere in the world to use for education, research,
and conservation.
For a complete description of the database, please refer to our open access publication entitled BioTIME 2.0: Expanding and Improving a Database of Biodiversity Time Series.
Installation
install.packages("BioTIMEr") # CRAN version
remotes::github_install("bioTIMEHub/BioTIMEr", ref = "dev") # dev version
Getting Started
Most BioTIME users are interested in standardising the extent of the datasets.
Here using the data subset included inside the package.
library(BioTIMEr)
gridding(BTsubset_meta, BTsubset_data)
A likely following step would be to rarefy communities to a common sampling effort.
gridding(BTsubset_meta, BTsubset_data) |>
resampling("ABUNDANCE")
Citation
Under the terms of the BioTIME data user agreement, users who download data agree to cite all underlying DOIs.
Please also cite BioTIMEr by running citation(package = "BioTIMEr").
Meta
- Please report any issues or bugs.
- License: MIT
- Get citation information for
BioTIMErin R doingcitation(package = 'BioTIMEr')
Owner metadata
- Name: BioTIME
- Login: bioTIMEHub
- Email:
- Kind: organization
- Description: We're a lab based at the University of St Andrews investigating diversity from macroecological and reef ecosystem perspectives.
- Website:
- Location: St Andrews, UK
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/29038235?v=4
- Repositories: 2
- Last ynced at: 2023-03-02T06:11:26.407Z
- Profile URL: https://github.com/bioTIMEHub
GitHub Events
Total
- Issues event: 1
- Watch event: 2
- Delete event: 4
- Issue comment event: 4
- Push event: 46
- Pull request review comment event: 7
- Pull request review event: 2
- Pull request event: 12
- Create event: 5
Last Year
- Issues event: 1
- Watch event: 2
- Delete event: 4
- Issue comment event: 4
- Push event: 46
- Pull request review comment event: 7
- Pull request review event: 2
- Pull request event: 12
- Create event: 5
Issue and Pull Request metadata
Last synced: 10 days ago
Total issues: 8
Total pull requests: 22
Average time to close issues: 4 months
Average time to close pull requests: 6 days
Total issue authors: 2
Total pull request authors: 3
Average comments per issue: 0.38
Average comments per pull request: 0.27
Merged pull request: 12
Bot issues: 0
Bot pull requests: 8
Past year issues: 1
Past year pull requests: 13
Past year average time to close issues: N/A
Past year average time to close pull requests: 2 days
Past year issue authors: 1
Past year pull request authors: 3
Past year average comments per issue: 0.0
Past year average comments per pull request: 0.46
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 8
Top Issue Authors
- AlbanSagouis (7)
- jarioksa (1)
Top Pull Request Authors
- AlbanSagouis (13)
- dependabot[bot] (8)
- jarioksa (1)
Top Issue Labels
Top Pull Request Labels
- dependencies (8)
- github_actions (8)
Package metadata
- Total packages: 1
-
Total downloads:
- cran: 235 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 6
- Total maintainers: 1
cran.r-project.org: BioTIMEr
Tools to Use and Explore the 'BioTIME' Database
- Homepage: https://github.com/bioTIMEHub/BioTIMEr
- Documentation: http://cran.r-project.org/web/packages/BioTIMEr/BioTIMEr.pdf
- Licenses: MIT + file LICENSE
- Latest release: 0.3.0 (published about 1 month ago)
- Last Synced: 2026-01-09T04:42:34.369Z (2 days ago)
- Versions: 6
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 235 Last month
-
Rankings:
- Dependent packages count: 28.03%
- Dependent repos count: 36.03%
- Average: 49.72%
- Downloads: 85.098%
- Maintainers (1)
Dependencies
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- JamesIves/github-pages-deploy-action v4.4.1 composite
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- actions/checkout v3 composite
- actions/upload-artifact v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- R >= 3.5.0 depends
- checkmate * imports
- dggridR * imports
- dplyr * imports
- ggplot2 * imports
- tidyr * imports
- vegan * imports
- knitr * suggests
- maps * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
- vdiffr * suggests
- rocker/tidyverse devel build
Score: -Infinity