BioTIMEr - BioTIMEr version 0.3.2 CRAN

BioTIMEr version 0.3.2 CRAN

BioTIMEr 0.3.2 - 04.03.2026

Minor Improvements and Bug Fixes

• Documentation for data sets BTsubset_data and BTsubset_meta was improved.
• Figures in the vignette were invisible.

Biosphere - Biodiversity Analysis and Metrics - R
Published by AlbanSagouis 3 months ago

BioTIMEr - BioTIMEr version 0.3.1 CRAN

BioTIMEr 0.3.1 - 10.02.2026

Minor Improvements and Bug Fixes

• getLinearRegressions() now handles data from getMetrics() with several
  resamplings
• getMetrics() and getLinearRegressions() now work without resamplings
  allowing users to run them on their own data.
• vignette YAML frontmatter fixed.

Biosphere - Biodiversity Analysis and Metrics - R
Published by AlbanSagouis 4 months ago

BioTIMEr - BioTIMEr version 0.3.0 CRAN

BioTIMEr 0.3.0 - 29.11.2025

Major Improvement

• The package now uses data.table in the background for major speed
  and memory usage improvements. Resampling the whole BioTIME database used to
  take > 1 hour and now takes < 1 minute.
• methods: gridding and resampling functions now handle data.frame,
  data.table and tibble objects with dedicated functions.
• getAlphaMetrics and getBetaMetrics are faster and use 100x less memory.

New Features

• In the resampling function:

  • new argument summarise, TRUE by default keeps previous behaviour.

    If TRUE, the abundance and/or biomass is summed per rarefyID while if FALSE
    the abundance and/or biomass will be summed per rarefyID/SAMPLE_DESC and gives
    more columns.

• In the getAlphaMetrics and getBetaMetrics functions:

  • data.frames containing several resamplings are accepted

    If the provided data contain several resamplings, metrics will be computed
    per resampling, per assemblageID, per year.

• In the getLinearRegressions function:

  • removed the divType argument.

    The function now reads the class of the objects produced by getAlphaMetrics
    and getBetaMetrics and computes the expected metrics.

Minor Improvements and Bug Fixes

• In the themeBioTIME function:

  • argument lp is soft deprecated in favour of legend.position
  • argument fontSize is soft deprecated in favour of font.size
  • argument colx is soft deprecated in favour of axis.colour
  • argument coly is soft deprecated in favour of strip.background
  • the order of the arguments did not change.

Biosphere - Biodiversity Analysis and Metrics - R
Published by AlbanSagouis 7 months ago

BioTIMEr - Patch - BioTIMEr v0.2.6

Patch: tests were modified to adapt to latest vegan update

Biosphere - Biodiversity Analysis and Metrics - R
Published by AlbanSagouis 8 months ago

BioTIMEr - Patch - BioTIMEr v0.2.5

Quick patch skipping some tests on CRAN and CI that were causing problems.

Biosphere - Biodiversity Analysis and Metrics - R
Published by AlbanSagouis 9 months ago

BioTIMEr - BioTIMEr version 0.2.4 CRAN

Accepted 06.06.2025

Biosphere - Biodiversity Analysis and Metrics - R
Published by AlbanSagouis about 1 year ago

BioTIMEr - BioTIMEr version 0.2.3 CRAN

Accepted 31.07.2024

Biosphere - Biodiversity Analysis and Metrics - R
Published by AlbanSagouis almost 2 years ago

BioTIMEr - BioTIMEr version 0.2.2 CRAN

Accepted 03.04.2024

Biosphere - Biodiversity Analysis and Metrics - R
Published by AlbanSagouis about 2 years ago