vegan

Ordination methods, diversity analysis and other functions for community and vegetation ecologists.
https://github.com/vegandevs/vegan

Category: Biosphere
Sub Category: Ecological and Environmental Modeling

Keywords

ecological-modelling ecology ordination r

Keywords from Contributors

biodiversity geo taxonomy tidy-data taxize nomenclature darwincore biology package-creation species

Last synced: about 11 hours ago
JSON representation

Repository metadata

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

Host: GitHub
URL: https://github.com/vegandevs/vegan
Owner: vegandevs
License: gpl-2.0
Created: 2012-02-13T10:29:24.000Z (about 14 years ago)
Default Branch: master
Last Pushed: 2026-04-20T19:37:06.000Z (11 days ago)
Last Synced: 2026-04-27T00:13:22.636Z (5 days ago)
Topics: ecological-modelling, ecology, ordination, r
Language: R
Homepage: https://vegandevs.github.io/vegan/
Size: 568 MB
Stars: 528
Watchers: 33
Forks: 108
Open Issues: 34
Releases: 26
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- License: LICENSE

vegan: an R package for community ecologists

Ordination methods, diversity analysis and other functions for community and
vegetation ecologists.

Website for the development version of the vegan package.

Vignettes are available on R-universe

Installation

To install the development version of vegan you can use the usual git and R CMD build -> R CMD INSTALL dance on the cloned repo (or downloaded sources). You'll need to be able to install packages from source for that to work; if you don't have the relevant developer tools, you won't be able to install vegan this way.

Using remotes

If you do have the developer tools installed but don't want the hassle of keeping a local source code tree up-to-date, use the remotes package:

install.packages("remotes")
remotes::install_github("vegandevs/vegan")

Installing binaries from R Universe

If you just want to install a binary version of the packages, just as you would from CRAN, you can install from our R Universe repository. Run the following in your R session:

install.packages('vegan',
    repos = c('https://vegandevs.r-universe.dev','https://cloud.r-project.org'))

Owner metadata

Name: vegandevs
Login: vegandevs
Email:
Kind: organization
Description:
Website:
Location:
Twitter:
Company:
Icon url: https://avatars.githubusercontent.com/u/8548207?v=4
Repositories: 4
Last ynced at: 2024-03-26T08:07:45.698Z
Profile URL: https://github.com/vegandevs

GitHub Events

Total

Release event: 3
Pull request event: 5
Fork event: 8
Discussion event: 3
Issues event: 82
Watch event: 47
Issue comment event: 125
Push event: 185
Pull request review comment event: 59
Pull request review event: 31
Create event: 6

Last Year

Release event: 2
Fork event: 4
Discussion event: 3
Issues event: 18
Watch event: 19
Issue comment event: 37
Push event: 95
Pull request review event: 1
Create event: 3

Committers metadata

Last synced: 2 days ago

Total Commits: 5,288
Total Committers: 39
Avg Commits per committer: 135.59
Development Distribution Score (DDS): 0.429

Commits in past year: 253
Committers in past year: 4
Avg Commits per committer in past year: 63.25
Development Distribution Score (DDS) in past year: 0.032

Name	Email	Commits
Jari Oksanen	j**n@o**i	3017
jarioksa	j**a@e**b	1441
Gavin Simpson	u**s@g**m	295
psolymos	p**s@e**b	175
gsimpson	g**n@e**b	99
antagomir	l**i@i**i	59
Peter Solymos	p**s@g**m	48
edisz	s**2@u**e	37
Geoffrey Hannigan	g**i@u**u	16
James Weedon	j**n@g**m	14
edisz	e**s@g**m	12
olivroy	5****y	8
Michael Chirico	c**m@g**m	7
Dan McGlinn	d**n@g**m	6
gblanchet	g**t@e**b	6
becarioprecario	b**o@g**m	5
Pierre Legendre	p**e@u**a	4
O957	1****7	4
Zhilong Jia	z**a@g**m	3
Isaac Peetoom Heida	i**c@p**a	3
Virgilio Gomez Rubio	v**l@j**s	3
Gavin	g**n@h**a	2
Hannigan, Geoffrey	g**n@m**m	2
hankstevens	h**s@e**b	2
Tuomas Borman	6****n	2
Henrik Bengtsson	hb@a****g	2
Peter Minchin	p**i@s**u	2
Michael Friendly	f**y@y**a	2
Ben Bolker	b**r@g**m	2
Salix	3****d	1
and 9 more...

Committer domains:

Issue and Pull Request metadata

Last synced: 2 days ago

Total issues: 216
Total pull requests: 38
Average time to close issues: 11 months
Average time to close pull requests: 4 months
Total issue authors: 154
Total pull request authors: 14
Average comments per issue: 3.23
Average comments per pull request: 3.95
Merged pull request: 30
Bot issues: 0
Bot pull requests: 0

Past year issues: 21
Past year pull requests: 3
Past year average time to close issues: 4 days
Past year average time to close pull requests: 10 days
Past year issue authors: 14
Past year pull request authors: 3
Past year average comments per issue: 2.29
Past year average comments per pull request: 1.33
Past year merged pull request: 2
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/vegandevs/vegan

Top Issue Authors

jarioksa (24)
gavinsimpson (10)
pauGuas (5)
O957 (5)
aguilart (5)
LaFra7 (3)
antagomir (3)
HenrikBengtsson (3)
lshlsh109 (3)
melissaszy (2)
TJrogers86 (2)
ailich (2)
Willowtree72 (2)
fvlampe (2)
telenskyt (2)

Top Pull Request Authors

antagomir (7)
gavinsimpson (6)
olivroy (5)
TuomasBorman (4)
MichaelChirico (4)
jarioksa (3)
fpusan (2)
HenrikBengtsson (1)
jebyrnes (1)
fkeck (1)
salix-d (1)
PeetoomHeida (1)
O957 (1)
zhilongjia (1)

Top Issue Labels

help-request (21)
feature-request (11)
bug (9)
CRAN trouble (9)
not-a-bug (8)
fixed (7)
not a vegan issue (4)
request-for-comments (3)
release-planning (3)
documentation (2)
work-in-progress (2)
enhancement (2)
WONTFIX (1)

Top Pull Request Labels

bug (2)
fixed (1)
CRAN trouble (1)

Package metadata

Total packages: 1
Total downloads:
- cran: 137,094 last-month
Total docker downloads: 966,380
Total dependent packages: 218
Total dependent repositories: 563
Total versions: 94
Total maintainers: 1

cran.r-project.org: vegan

Community Ecology Package

Homepage: https://vegandevs.github.io/vegan/
Documentation: http://cran.r-project.org/web/packages/vegan/vegan.pdf
Licenses: GPL-2
Latest release: 2.7-3 (published about 2 months ago)
Last Synced: 2026-04-24T07:03:15.116Z (8 days ago)
Versions: 94
Dependent Packages: 218
Dependent Repositories: 563
Downloads: 137,094 Last month
Docker Downloads: 966,380
Rankings:
- Dependent packages count: 0.509%
- Dependent repos count: 0.618%
- Forks count: 0.692%
- Stargazers count: 0.914%
- Downloads: 1.42%
- Average: 3.575%
- Docker downloads count: 17.297%
Maintainers (1)
- jhoksane@gmail.com

Dependencies

DESCRIPTION cran

R >= 3.4.0 depends
lattice * depends
permute >= 0.9 depends
MASS * imports
cluster * imports
mgcv * imports
knitr * suggests
markdown * suggests
parallel * suggests
tcltk * suggests

.github/workflows/R-CMD-check.yaml actions

actions/checkout v2 composite
r-lib/actions/check-r-package v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite
r-lib/actions/setup-tinytex v2 composite

.github/workflows/pkgdown.yaml actions

JamesIves/github-pages-deploy-action 4.1.4 composite
actions/checkout v2 composite
r-lib/actions/setup-pandoc v2 composite
r-lib/actions/setup-r v2 composite
r-lib/actions/setup-r-dependencies v2 composite

.github/workflows/recheck.yml actions

Score: 23.909879876931047

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