moveHMM
R package which implements hidden Markov models and associated tools (state decoding, model selection, model checking, etc.) tailored to animal movement modelling.
https://github.com/theomichelot/movehmm
Category: Biosphere
Sub Category: Ecological and Environmental Modeling
Last synced: about 6 hours ago
JSON representation
Repository metadata
R package - Animal movement modelling using hidden Markov models
- Host: GitHub
- URL: https://github.com/theomichelot/movehmm
- Owner: TheoMichelot
- Created: 2015-07-14T08:25:37.000Z (almost 10 years ago)
- Default Branch: master
- Last Pushed: 2025-04-07T12:27:45.000Z (21 days ago)
- Last Synced: 2025-04-21T21:08:34.211Z (7 days ago)
- Language: R
- Homepage: https://cran.r-project.org/package=moveHMM
- Size: 5.39 MB
- Stars: 40
- Watchers: 9
- Forks: 12
- Open Issues: 1
- Releases: 8
-
Metadata Files:
- Readme: README.md
README.md
moveHMM 
An R package for analysing animal movement with hidden Markov models.
Get started with the vignettes:
Installation instructions
Stable release
The package is available on CRAN. To install it from CRAN, you can use the following command:
install.packages("moveHMM")
Install from Github
To install the latest (unstable) version of the package from Github:
devtools::install_github("TheoMichelot/moveHMM", build_vignettes = TRUE)
References
Michelot, T., Langrock, R., Patterson, T.A. (2016). moveHMM: An R package for analysing animal movement data using hidden Markov models. Methods in Ecology and Evolution. 7(11), 1308-1315.
Langrock, R., King, R., Matthiopoulos, J., Thomas, L., Fortin, D., & Morales, J. M. (2012). Flexible and practical modeling of animal telemetry data: hidden Markov models and extensions. Ecology, 93(11), 2336-2342.
Patterson, T. A., Basson, M., Bravington, M. V., & Gunn, J. S. (2009). Classifying movement behaviour in relation to environmental conditions using hidden Markov models. Journal of Animal Ecology, 78(6), 1113-1123.
Owner metadata
- Name: Théo Michelot
- Login: TheoMichelot
- Email:
- Kind: user
- Description: Assistant professor in statistics at Dalhousie University, Halifax, Canada
- Website: https://theomichelot.github.io/
- Location: Halifax
- Twitter: TheoMichelot
- Company: Dalhousie University
- Icon url: https://avatars.githubusercontent.com/u/7921822?u=0575ac4beb18fbab63ad35df2a64f311dec8168e&v=4
- Repositories: 3
- Last ynced at: 2023-02-26T20:10:17.179Z
- Profile URL: https://github.com/TheoMichelot
GitHub Events
Total
- Issues event: 1
- Watch event: 2
- Issue comment event: 2
- Push event: 1
- Fork event: 1
Last Year
- Issues event: 1
- Watch event: 2
- Issue comment event: 2
- Push event: 1
- Fork event: 1
Committers metadata
Last synced: 7 days ago
Total Commits: 661
Total Committers: 8
Avg Commits per committer: 82.625
Development Distribution Score (DDS): 0.339
Commits in past year: 4
Committers in past year: 1
Avg Commits per committer in past year: 4.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| TheoMichelot | t****t@g****m | 437 |
| TheoMichelot | t****t@i****r | 136 |
| Théo Michelot | t****5@s****k | 63 |
| RolandLangrock | r****3@s****k | 10 |
| brettmcclintock | b****k@n****v | 8 |
| Max Czapanskiy | m****p@s****u | 4 |
| Justin Shenk | s****n@g****m | 2 |
| Alec L. Robitaille | r****c@g****m | 1 |
Committer domains:
- st-andrews.ac.uk: 2
- stanford.edu: 1
- noaa.gov: 1
- insa-rouen.fr: 1
Issue and Pull Request metadata
Last synced: 1 day ago
Total issues: 22
Total pull requests: 11
Average time to close issues: about 1 month
Average time to close pull requests: 3 days
Total issue authors: 18
Total pull request authors: 4
Average comments per issue: 3.36
Average comments per pull request: 0.36
Merged pull request: 11
Bot issues: 0
Bot pull requests: 0
Past year issues: 1
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 1
Past year pull request authors: 0
Past year average comments per issue: 3.0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- bniebuhr (3)
- FlukeAndFeather (3)
- windstorm13 (1)
- jojanzing (1)
- JWhiteWildlife (1)
- LucyJMitchell (1)
- milliff (1)
- star96 (1)
- eduardszoecs (1)
- RoryMMMM (1)
- afateigeruri (1)
- scra88le (1)
- DanaKarelus (1)
- MarkJThomas (1)
- anjankatna (1)
Top Pull Request Authors
- bmcclintock (7)
- FlukeAndFeather (2)
- robitalec (1)
- JustinShenk (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- cran: 1,216 last-month
- Total docker downloads: 21,777
- Total dependent packages: 7
- Total dependent repositories: 7
- Total versions: 11
- Total maintainers: 1
cran.r-project.org: moveHMM
Animal Movement Modelling using Hidden Markov Models
- Homepage: https://github.com/TheoMichelot/moveHMM
- Documentation: http://cran.r-project.org/web/packages/moveHMM/moveHMM.pdf
- Licenses: GPL-3
- Latest release: 1.10 (published 21 days ago)
- Last Synced: 2025-04-27T03:01:57.929Z (1 day ago)
- Versions: 11
- Dependent Packages: 7
- Dependent Repositories: 7
- Downloads: 1,216 Last month
- Docker Downloads: 21,777
-
Rankings:
- Forks count: 6.29%
- Dependent packages count: 6.631%
- Stargazers count: 9.182%
- Average: 9.901%
- Dependent repos count: 11.095%
- Docker downloads count: 12.56%
- Downloads: 13.649%
- Maintainers (1)
Dependencies
- CircStats * depends
- MASS * imports
- Rcpp * imports
- boot * imports
- geosphere * imports
- ggmap * imports
- ggplot2 * imports
- numDeriv * imports
- sp * imports
- knitr * suggests
- testthat * suggests
Score: 15.83704540591258