baytrends

Evaluate long-term trends in the Chesapeake Bay using a Generalized Additive Modeling approach.
https://github.com/tetratech/baytrends

Category: Hydrosphere
Sub Category: Coastal and Reefs

Keywords

r-package

Last synced: about 4 hours ago
JSON representation

Repository metadata

Evaluate long-term trends in the Chesapeake Bay using a Generalized Additive Modeling (GAM) approach

README.Rmd

          ---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# baytrends




[![CRAN status](https://www.r-pkg.org/badges/version/baytrends)](https://cran.r-project.org/package=baytrends) 
Windows [![cran checks](https://badges.cranchecks.info/flavor/windows/baytrends.svg)](https://cran.r-project.org/web/checks/check_results_baytrends.html) 
Linux [![cran checks](https://badges.cranchecks.info/flavor/linux/baytrends.svg)](https://cran.r-project.org/web/checks/check_results_baytrends.html) 
OSX [![cran checks](https://badges.cranchecks.info/flavor/macos/baytrends.svg)](https://cran.r-project.org/web/checks/check_results_baytrends.html) 

[![Lifecycle: stable](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://lifecycle.r-lib.org/articles/stages.html) 
[![Maintenance](https://img.shields.io/badge/Maintained%3F-yes-green.svg)](https://GitHub.com/tetratech/baytrends/graphs/commit-activity)



The baytrends package was developed to enable users to evaluate long-term trends
in the Chesapeake Bay using a Generalized Additive Modeling (GAM) approach. The
model development includes selecting a GAM structure to describe nonlinear 
seasonally-varying changes over time, incorporation of hydrologic variability 
via either a river flow or salinity, the use of an intervention to deal with 
method or laboratory changes suspected to impact data values, and representation
of left- and interval-censored data. This approach, which is fully transferable
to other systems, allows for Chesapeake Bay water quality data to be evaluated 
in a statistically rigorous, yet flexible way to provide insights to a range of 
management- and research-focused questions.

## Installation

The CRAN version of baytrends from [CRAN](https://CRAN.R-project.org) 
can be installed with the code below.

``` r
install.packages("baytrends")
```

In some cases not all dependent packages are available on the user's system.
In these cases installing all dependencies is necessary.

```r
install.packages("baytrends", dependencies = TRUE)
```

The development version (with vignettes) from [GitHub](https://github.com/) 
can be installed with the code example below using the `remotes` package.

``` r
if(!require(remotes)){install.packages("remotes")}  #install if needed
install_github("tetratech/baytrends", force = TRUE, build_vignettes = TRUE)
```

        

Owner metadata


GitHub Events

Total
Last Year

Committers metadata

Last synced: 8 days ago

Total Commits: 249
Total Committers: 3
Avg Commits per committer: 83.0
Development Distribution Score (DDS): 0.438

Commits in past year: 7
Committers in past year: 2
Avg Commits per committer in past year: 3.5
Development Distribution Score (DDS) in past year: 0.429

Name Email Commits
Jon Harcum j****m@t****m 140
leppott E****o@t****m 108
olivroy 5****y 1

Committer domains:


Issue and Pull Request metadata

Last synced: 1 day ago

Total issues: 57
Total pull requests: 32
Average time to close issues: about 2 months
Average time to close pull requests: about 21 hours
Total issue authors: 5
Total pull request authors: 4
Average comments per issue: 1.68
Average comments per pull request: 0.22
Merged pull request: 28
Bot issues: 0
Bot pull requests: 0

Past year issues: 4
Past year pull requests: 3
Past year average time to close issues: 10 days
Past year average time to close pull requests: 8 minutes
Past year issue authors: 3
Past year pull request authors: 2
Past year average comments per issue: 1.5
Past year average comments per pull request: 0.0
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/tetratech/baytrends

Top Issue Authors

  • jharcum (43)
  • leppott (11)
  • dutangc (1)
  • sckott (1)
  • jharcum07 (1)

Top Pull Request Authors

  • jharcum (16)
  • leppott (12)
  • jharcum07 (2)
  • olivroy (2)

Top Issue Labels

  • enhancement (18)
  • on hold (11)
  • review (6)
  • help wanted (4)
  • bug (3)

Top Pull Request Labels


Package metadata

cran.r-project.org: baytrends

Long Term Water Quality Trend Analysis

  • Homepage: https://github.com/tetratech/baytrends
  • Documentation: http://cran.r-project.org/web/packages/baytrends/baytrends.pdf
  • Licenses: GPL-3
  • Latest release: 2.0.12 (published 10 months ago)
  • Last Synced: 2025-05-17T00:33:05.281Z (1 day ago)
  • Versions: 11
  • Dependent Packages: 0
  • Dependent Repositories: 2
  • Downloads: 392 Last month
  • Docker Downloads: 21,613
  • Rankings:
    • Docker downloads count: 0.579%
    • Forks count: 12.199%
    • Average: 17.319%
    • Stargazers count: 17.386%
    • Dependent repos count: 19.265%
    • Downloads: 25.73%
    • Dependent packages count: 28.751%
  • Maintainers (1)

Dependencies

DESCRIPTION cran
  • R >= 3.5.0 depends
  • dataRetrieval * imports
  • digest * imports
  • dplyr * imports
  • fitdistrplus * imports
  • grDevices * imports
  • knitr * imports
  • lubridate * imports
  • memoise * imports
  • mgcv * imports
  • pander * imports
  • plyr * imports
  • readxl * imports
  • sessioninfo * imports
  • survival * imports
  • devtools * suggests
  • imputeTS * suggests
  • markdown * suggests
  • nlme * suggests
  • rmarkdown * suggests
  • testthat * suggests
.github/workflows/R-CMD-check.yaml actions
  • actions/checkout v4 composite
  • r-lib/actions/check-r-package v2 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/pkgdown.yaml actions
  • JamesIves/github-pages-deploy-action v4.5.0 composite
  • actions/checkout v4 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite
.github/workflows/test-coverage.yaml actions
  • actions/checkout v4 composite
  • actions/upload-artifact v4 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-r-dependencies v2 composite

Score: 14.355915566284265