rsofun - v5.0.1

• This model version behaves exactly as the version before.
• Version update was necessary to deposit a copy on Zenodo that includes improved description of scripts and data used for the model documentation paper (Paredes et al.)

Biosphere - Plants and Vegetation - Fortran
Published by fabern 17 days ago

rsofun - v5.0.0

CRAN release

This release is available on CRAN.

What's Changed

• Major stability improvements of BiomeE (fix segmentation faults and random outputs in the Fortran layer)
• Fix compilation to support all major platforms (LTO, parallel make, removed non supported language features)
• Removed prescribed net radiation option
• BiomeE and P-model forcing homogenization
  • prec is now called rain
  • rh is now provided as vpd
• Dynamic sized arrays are now supported (arrays passed along with their size to Fortran)

Full Changelog: https://github.com/geco-bern/rsofun/compare/v4.4...v5.0

Biosphere - Plants and Vegetation - Fortran
Published by marcadella 5 months ago

rsofun - rsofun v4.4

This is the first CRAN release of the package. The changes introduced after previous releases are:

• Bugfix on input data type P-model
• LM3-PPA to BiomeE renaming
• Cost function rewrite
• Update output format (consistency)
• Add water balance variables to P-model output
• New p-model calibratable parameters
• Rewrite of temperature and soil moisture stress functions
• Update simulation parameters to take netrad, ppfd and ccov as input forcing
• Documentation parameter sensitivity analysis
• Documentation on the data format
• Document calibration diagnostic and model uncertainty calculation
• More transparent licensing and copyright statements in COPYING file

Biosphere - Plants and Vegetation - Fortran
Published by pepaaran over 1 year ago

rsofun - rsofun v4.4

This is the first CRAN release of the package. The changes introduced after previous releases are:

• Bugfix on input data type P-model
• LM3-PPA to BiomeE renaming
• Cost function rewrite
• Update output format (consistency)
• Add water balance variables to P-model output
• New p-model calibratable parameters
• Rewrite of temperature and soil moisture stress functions
• Update simulation parameters to take netrad, ppfd and ccov as input forcing
• Documentation parameter sensitivity analysis
• Documentation on the data format
• Document calibration diagnostic and model uncertainty calculation
• More transparent licensing and copyright statements in COPYING file

Biosphere - Plants and Vegetation - Fortran
Published by pepaaran over 1 year ago

rsofun - rsofun v4.3

Release version 4.3 jumps from 4.0 and includes substantial changes. Please check dependencies in you code if rerunning with version 4.3.

The list of changes include:

• catching aborting in FORTRAN part to avoid R session crashes (v4.1)
• canopy transfer solved for LM3-PPA with P-model (v4.2)
• general bugfixes (v4.2)
• consistent variable names p-model / lm3-ppa (v4.3)
• optimization stability BayesianTools (v4.3)
• new documentation (v4.3)

Biosphere - Plants and Vegetation - Fortran
Published by khufkens about 3 years ago

rsofun - rsofun v4.0

Public release after refactored code.

Biosphere - Plants and Vegetation - Fortran
Published by stineb over 3 years ago

rsofun - LM3-PPA implemented

LM3-PPA is now fully implemented in the master branch. Successfully compiles and runs both P-model and LM3-PPA simulations.

Unresolved bug:

• Crashes during runtime when compiled and run on one machine, but not on another. The problem concerns the tile-level output arrays output_daily_tile and output_annual_tile.

Biosphere - Plants and Vegetation - Fortran
Published by stineb about 5 years ago

rsofun - Data ingestion done outside.

Data ingestion now done outside rsofun (using ingestr package). Example complete in vignettes/example.Rmd.

Biosphere - Plants and Vegetation - Fortran
Published by stineb about 5 years ago

rsofun - v1.0.wrap_sofun

Version of rsofun used for Stocker et al. (2020) GMD. Wraps the SOFUN model (separate repository!) though input/output writing via files. No direct wrapping of the FORTRAN code within the rsofun package is implemented at this release.

Biosphere - Plants and Vegetation - Fortran
Published by stineb about 5 years ago

rsofun - Shared memory with Fortran

Biosphere - Plants and Vegetation - Fortran
Published by stineb over 5 years ago

rsofun - Version for eval_pmodel

This is the code version used for the eval_pmodel model documentation paper, and before Nick Smith's optimal Vcmax calculation is implemented (as optional method) and before pressure-dependence of $\Gamma^{\ast}$ and Michaelis-Menten-K parameters are implemented (as new standard).

Biosphere - Plants and Vegetation - Fortran
Published by stineb over 6 years ago