ecocomDP

A dataset design pattern for harmonizing ecological community surveys in a research question agnostic format from source datasets published across multiple repositories.
https://github.com/ediorg/ecocomdp

Category: Sustainable Development
Sub Category: Data Catalogs and Interfaces

Keywords from Contributors

ecology ecological-metadata-language eml

Last synced: about 15 hours ago
JSON representation

Repository metadata

A dataset design pattern and R package for ecological community data.

• Host: GitHub
• URL: https://github.com/ediorg/ecocomdp
• Owner: EDIorg
• License: other
• Created: 2017-06-14T14:22:43.000Z (almost 8 years ago)
• Default Branch: main
• Last Pushed: 2025-05-21T14:32:56.000Z (17 days ago)
• Last Synced: 2025-05-31T15:56:35.282Z (7 days ago)
• Language: R
• Homepage: https://ediorg.github.io/ecocomDP/
• Size: 38.5 MB
• Stars: 34
• Watchers: 12
• Forks: 14
• Open Issues: 41
• Releases: 7
• Metadata Files:
  • Readme: README.Rmd
  • Changelog: NEWS.md
  • Contributing: CONTRIBUTING.md
  • License: LICENSE
  • Code of conduct: CODE_OF_CONDUCT.md
  • Codemeta: codemeta.json

README.Rmd

          ---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  # fig.path = "man/figures/README-",
  fig.path = "README-",
  out.width = "100%"
)
```

# ecocomDP 


[![CRAN status](https://www.r-pkg.org/badges/version/ecocomDP)](https://cran.r-project.org/package=ecocomDP)


## Overview

Tools to create, use, and convert 'ecocomDP' datasets. 'ecocomDP' is a dataset design pattern for harmonizing ecological community surveys in a research question agnostic format, from source datasets published across multiple repositories, and with methods that keep the derived datasets up-to-date as the underlying sources change. Described in O'Brien et al. (2021), .

## Installation

Get the latest CRAN release:
```{r eval=FALSE}
install.packages("ecocomDP")
```

Get the latest development version:
```{r eval=FALSE}
# install.packages("remotes")
remotes::install_github("EDIorg/ecocomDP", ref = "development")
```

## Usage

* [Create ecocomDP Data](https://ediorg.github.io/ecocomDP/articles/create.html)
* [Use ecocomDP Data](https://ediorg.github.io/ecocomDP/articles/use.html)
* [Convert ecocomDP Data to Another Model Format](https://ediorg.github.io/ecocomDP/articles/convert.html)

## Model documentation
* [Model Overview](https://ediorg.github.io/ecocomDP/articles/model_overview.html)
* [Shared Practices for Creating ecocomDP Data](https://ediorg.github.io/ecocomDP/articles/shared_practices_create.html)

## Getting help

Use [GitHub Issues](https://github.com/EDIorg/ecocomDP/issues) for bug reporting, feature requests, and general questions/discussions. When filing bug reports, please include a minimal reproducible example. 

## Contributing

Community contributions are welcome! Please reference our [contributing guidelines](https://github.com/EDIorg/ecocomDP/blob/master/CONTRIBUTING.md) for details.

-----

Please note that this project is released with a [Contributor Code of Conduct](https://github.com/EDIorg/ecocomDP/blob/master/CODE_OF_CONDUCT.md). By participating in this project you agree to abide by its terms.

        

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Owner metadata

• Name: Environmental Data Initiative
• Login: EDIorg
• Email: [email protected]
• Kind: organization
• Description: Accelerating the archive and reuse of environmental data
• Website: https://edirepository.org/
• Location:
• Twitter: EDIgotdata
• Company:
• Icon url: https://avatars.githubusercontent.com/u/22452966?v=4
• Repositories: 12
• Last ynced at: 2023-02-26T11:45:37.501Z
• Profile URL: https://github.com/EDIorg

---

GitHub Events

Total

• Issues event: 6
• Watch event: 2
• Delete event: 1
• Issue comment event: 6
• Push event: 4
• Pull request event: 1
• Fork event: 1
• Create event: 2

Last Year

• Issues event: 6
• Watch event: 2
• Delete event: 1
• Issue comment event: 6
• Push event: 4
• Pull request event: 1
• Fork event: 1
• Create event: 2

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Committers metadata

Last synced: 11 days ago

Name	Email	Commits
Colin Smith	c****h@w****u	1205
Margaret O'Brien	m****b@m****u	196
Eric R. Sokol	s****e@g****m	160
Colin Smith	c****v@g****m	87
Ruvi Esmeralda Jaimes	g****y@r****t	24
will-rosenthal	3****l	11
savannahrayegonzales	5****s	11
Corinna Gries	c****s@w****u	9
Kyle Zollo	k****o@g****m	8
Kari Norman	k****i@n****g	2
Yvan Le Bras	y****s@m****r	1
SaraPaull	p****l@b****g	1

Committer domains:

• wisc.edu: 2
• battelleecology.org: 1
• mnhn.fr: 1
• normanfamily.org: 1
• ruvis-mbp.attlocal.net: 1
• msi.ucsb.edu: 1

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Issue and Pull Request metadata

Last synced: 1 day ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/ediorg/ecocomdp

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Package metadata

• Total packages: 3
• Total downloads:
  • cran: 267 last-month
• Total dependent packages: 0 (may contain duplicates)
• Total dependent repositories: 0 (may contain duplicates)
• Total versions: 19
• Total maintainers: 1

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Dependencies

Score: 12.393381743835167