CoordinateCleaner

Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.
https://github.com/ropensci/coordinatecleaner

Category: Biosphere
Sub Category: Biodiversity Data Cleaning and Standardization

Keywords

r r-package rstats

Keywords from Contributors

biodiversity gbif ecology spocc geo spatial-analysis gdal openscience hugo genome

Last synced: about 1 hour ago
JSON representation

Repository metadata

Automated flagging of common spatial and temporal errors in biological and palaeontological collection data, for the use in conservation, ecology and palaeontology.

• Host: GitHub
• URL: https://github.com/ropensci/coordinatecleaner
• Owner: ropensci
• Created: 2016-10-25T08:47:23.000Z (over 8 years ago)
• Default Branch: master
• Last Pushed: 2025-05-27T10:35:41.000Z (about 1 month ago)
• Last Synced: 2025-06-03T17:14:37.697Z (24 days ago)
• Topics: r, r-package, rstats
• Language: HTML
• Homepage: https://docs.ropensci.org/CoordinateCleaner/
• Size: 59.1 MB
• Stars: 84
• Watchers: 14
• Forks: 23
• Open Issues: 28
• Releases: 4
• Metadata Files:
  • Readme: README.md
  • Changelog: NEWS.md
  • Contributing: CONTRIBUTING.md
  • Codemeta: codemeta.json

README.md

install.packages("CoordinateCleaner")
library(CoordinateCleaner)

devtools::install_github("ropensci/CoordinateCleaner")
library(CoordinateCleaner)

# Simulate example data
minages <- runif(250, 0, 65)
exmpl <- data.frame(species = sample(letters, size = 250, replace = TRUE),
                    decimalLongitude = runif(250, min = 42, max = 51),
                    decimalLatitude = runif(250, min = -26, max = -11),
                    min_ma = minages,
                    max_ma = minages + runif(250, 0.1, 65),
                    dataset = "clean")

# Run record-level tests
rl <- clean_coordinates(x = exmpl)
summary(rl)
plot(rl)

# Dataset level 
dsl <- clean_dataset(exmpl)

# For fossils
fl <- clean_fossils(x = exmpl,
                          taxon = "species",
                          lon = "decimalLongitude", 
                          lat = "decimalLatitude")
summary(fl)

# Alternative example using the pipe
library(tidyverse)

cl <- exmpl %>%
  cc_val()%>%
  cc_cap()%>%
  cd_ddmm()%>%
  cf_range(lon = "decimalLongitude", 
           lat = "decimalLatitude", 
           taxon  ="species")

Owner metadata

• Name: rOpenSci
• Login: ropensci
• Email: [email protected]
• Kind: organization
• Description:
• Website: https://ropensci.org/
• Location: Berkeley, CA
• Twitter: rOpenSci
• Company:
• Icon url: https://avatars.githubusercontent.com/u/1200269?v=4
• Repositories: 307
• Last ynced at: 2023-03-10T20:30:59.242Z
• Profile URL: https://github.com/ropensci

GitHub Events

Total

• Issues event: 3
• Watch event: 5
• Issue comment event: 1
• Push event: 4
• Fork event: 1

Last Year

• Issues event: 3
• Watch event: 5
• Issue comment event: 1
• Push event: 4
• Fork event: 1

Committers metadata

Last synced: 2 days ago

Committer domains:

• science.domain: 1
• plantarum.ca: 1
• idiv.de: 1
• bioenv.gu.se: 1

Issue and Pull Request metadata

Last synced: 2 days ago

Package metadata

• Total packages: 1
• Total downloads:
  • cran: 1,384 last-month
• Total dependent packages: 5
• Total dependent repositories: 7
• Total versions: 15
• Total maintainers: 1

Dependencies

Score: 14.793794574608272