https://github.com/lgatto/msnbase
Base Classes and Functions for Mass Spectrometry and Proteomics
https://github.com/lgatto/msnbase
Keywords
bioconductor bioinformatics mass-spectrometry proteomics proteomics-data r visualisation
Keywords from Contributors
spatial-proteomics genomics transcriptome rpackage shiny ncbi-geo rhdf5 hdf5 rna-seq-data user-friendly
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
Base Classes and Functions for Mass Spectrometry and Proteomics
- Host: GitHub
- URL: https://github.com/lgatto/msnbase
- Owner: lgatto
- Created: 2010-10-02T15:27:36.000Z (over 14 years ago)
- Default Branch: master
- Last Pushed: 2024-05-15T16:33:22.000Z (12 months ago)
- Last Synced: 2024-06-11T20:18:04.522Z (11 months ago)
- Topics: bioconductor, bioinformatics, mass-spectrometry, proteomics, proteomics-data, r, visualisation
- Language: R
- Homepage: http://lgatto.github.io/MSnbase/
- Size: 96.9 MB
- Stars: 123
- Watchers: 14
- Forks: 50
- Open Issues: 10
- Releases: 0
-
Metadata Files:
- Readme: README.md
Owner metadata
- Name: Laurent Gatto
- Login: lgatto
- Email:
- Kind: user
- Description: Open science, reproducible research, bioinformatics, computational biology, proteomics, more omics, emacs, a lot of R, running and parenting.
- Website: https://fosstodon.org/@lgatto
- Location: Belgium
- Twitter:
- Company: de Duve Institute, UCLouvain
- Icon url: https://avatars.githubusercontent.com/u/384198?v=4
- Repositories: 98
- Last ynced at: 2023-03-11T08:50:49.259Z
- Profile URL: https://github.com/lgatto
Committers metadata
Last synced: over 1 year ago
Total Commits: 3,424
Total Committers: 43
Avg Commits per committer: 79.628
Development Distribution Score (DDS): 0.655
Commits in past year: 20
Committers in past year: 5
Avg Commits per committer in past year: 4.0
Development Distribution Score (DDS) in past year: 0.45
| Name | Commits | |
|---|---|---|
| Laurent | l****0@c****k | 1182 |
| l.gatto | l****o@b****8 | 450 |
| Laurent Gatto | l****o@d****e | 418 |
| Laurent | l****o@g****m | 374 |
| jotsetung | j****r@g****m | 336 |
| Sebastian Gibb | m****l@s****e | 303 |
| Laurent Gatto | l****o@u****e | 185 |
| d.tenenbaum | d****m@b****8 | 46 |
| Dan Tenenbaum | d****a@f****g | 28 |
| Nitesh Turaga | n****a@g****m | 14 |
| [email protected] | h****s@f****g@b****8 | 9 |
| Steffen Neumann | s****n@i****e | 9 |
| Herve Pages | h****s@f****g | 6 |
| Flora Liu | f****u@g****m | 5 |
| const-ae | a****5@g****m | 4 |
| Arne Hindrik Smits | a****s@e****e | 4 |
| vladpetyuk | p****k@g****m | 4 |
| J Wokaty | j****y@s****u | 4 |
| adder | a****r@g****m | 4 |
| Hervé Pagès | h****s@f****g | 3 |
| Rico Derks | r****s@l****l | 3 |
| Johannes Rainer | jo@m****l | 3 |
| Henk van den Toorn | v****n@h****m | 3 |
| Martifis | f****m@r****e | 2 |
| Pascal | p****2@g****m | 2 |
| s.arora | s****a@b****8 | 2 |
| vobencha | v****a@g****m | 2 |
| vobencha | v****n@r****g | 2 |
| J Wokaty | j****y | 2 |
| Jan Stanstrup | s****p@g****m | 2 |
| and 13 more... | ||
Committer domains:
- fhcrc.org: 5
- roswellpark.org: 2
- cam.ac.uk: 2
- cea.fr: 1
- uic.edu: 1
- rki.de: 1
- lumc.nl: 1
- fredhutch.org: 1
- sph.cuny.edu: 1
- embl.de: 1
- ipb-halle.de: 1
- uclouvain.be: 1
- sebastiangibb.de: 1
- dnavision.be: 1
Issue and Pull Request metadata
Last synced: 12 months ago
Total issues: 162
Total pull requests: 34
Average time to close issues: over 1 year
Average time to close pull requests: 6 days
Total issue authors: 55
Total pull request authors: 7
Average comments per issue: 5.32
Average comments per pull request: 2.82
Merged pull request: 34
Bot issues: 0
Bot pull requests: 0
Past year issues: 13
Past year pull requests: 4
Past year average time to close issues: 5 days
Past year average time to close pull requests: about 11 hours
Past year issue authors: 7
Past year pull request authors: 2
Past year average comments per issue: 7.23
Past year average comments per pull request: 3.0
Past year merged pull request: 4
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- lgatto (32)
- ibphuangchen (6)
- cyan20200410 (6)
- stanstrup (5)
- cbroeckl (4)
- plbaldoni (4)
- jamesrgraham (4)
- ricoderks (4)
- sgibb (4)
- jmorim (4)
- Lasseeli (4)
- pavel-shliaha (3)
- MuyaoXi9271 (3)
- luuulu (2)
- Marievlm (2)
Top Pull Request Authors
- jorainer (22)
- vdtoorn (2)
- Pascallio (2)
- lmsimp (2)
- hpages (2)
- MiguelCos (2)
- Adafede (2)
Top Issue Labels
- bug (8)
- feature request (8)
- enhancement (7)
- Spectra (6)
- MSnbase2 (4)
- won't fix (2)
- Documentation (2)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- bioconductor: 400,308 total
- Total dependent packages: 30
- Total dependent repositories: 0
- Total versions: 4
- Total maintainers: 1
bioconductor.org: MSnbase
Base Functions and Classes for Mass Spectrometry and Proteomics
- Homepage: https://lgatto.github.io/MSnbase
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/MSnbase/inst/doc/MSnbase.pdf
- Licenses: Artistic-2.0
- Latest release: 2.30.1 (published about 1 year ago)
- Last Synced: 2024-06-12T01:28:03.204Z (11 months ago)
- Versions: 4
- Dependent Packages: 30
- Dependent Repositories: 0
- Downloads: 400,308 Total
-
Rankings:
- Dependent repos count: 0.0%
- Forks count: 0.783%
- Stargazers count: 1.566%
- Average: 1.888%
- Dependent packages count: 2.436%
- Downloads: 4.654%
- Maintainers (1)
Dependencies
- Biobase >= 2.15.2 depends
- BiocGenerics >= 0.7.1 depends
- ProtGenerics >= 1.27.2 depends
- R >= 3.5 depends
- S4Vectors * depends
- methods * depends
- mzR >= 2.29.3 depends
- BiocParallel * imports
- IRanges >= 2.13.28 imports
- MALDIquant >= 1.16 imports
- MASS * imports
- MsCoreUtils * imports
- Rcpp * imports
- XML * imports
- affy * imports
- digest * imports
- ggplot2 * imports
- grid * imports
- impute * imports
- lattice * imports
- mzID >= 1.5.2 imports
- pcaMethods * imports
- plyr * imports
- scales * imports
- stats4 * imports
- vsn * imports
- AnnotationHub * suggests
- BiocStyle >= 2.5.19 suggests
- Rdisop * suggests
- SummarizedExperiment * suggests
- gplots * suggests
- gridExtra * suggests
- imputeLCMD * suggests
- knitr >= 1.1.0 suggests
- magrittr * suggests
- microbenchmark * suggests
- msdata >= 0.19.3 suggests
- norm * suggests
- pRoloc * suggests
- pRolocdata >= 1.7.1 suggests
- pryr * suggests
- rgl * suggests
- rmarkdown * suggests
- rols * suggests
- roxygen2 * suggests
- rpx * suggests
- shiny * suggests
- testthat * suggests
- zoo * suggests
- actions/cache v1 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
Score: 21.551616211080088