https://github.com/hclimente/martini
🍸R version of SConES, a systems-biology approach to GWAS.
https://github.com/hclimente/martini
Keywords
bioinformatics genomics gwas network-analysis r-package snps systems-biology
Keywords from Contributors
transcriptomics data-access metagenomics microbiome taxonomy biology proteomics spatial-proteomics visualisation hdf5
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
🍸R version of SConES, a systems-biology approach to GWAS.
- Host: GitHub
- URL: https://github.com/hclimente/martini
- Owner: hclimente
- Created: 2017-04-06T17:31:13.000Z (about 8 years ago)
- Default Branch: master
- Last Pushed: 2024-03-09T15:59:41.000Z (about 1 year ago)
- Last Synced: 2024-05-16T08:25:09.500Z (12 months ago)
- Topics: bioinformatics, genomics, gwas, network-analysis, r-package, snps, systems-biology
- Language: R
- Homepage:
- Size: 184 MB
- Stars: 4
- Watchers: 1
- Forks: 2
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.md
Owner metadata
- Name: Héctor Climente-González
- Login: hclimente
- Email:
- Kind: user
- Description: Machine learning for genomics
- Website: hclimente.eu
- Location: Kyoto
- Twitter: hclimente
- Company: @riken-aip
- Icon url: https://avatars.githubusercontent.com/u/5196281?u=749f07ef87b2ede533ce535ac1764e5360597846&v=4
- Repositories: 27
- Last ynced at: 2023-02-26T05:09:28.528Z
- Profile URL: https://github.com/hclimente
GitHub Events
Total
- Create event: 10
- Issues event: 9
- Release event: 1
- Watch event: 4
- Delete event: 3
- Issue comment event: 5
- Push event: 300
- Pull request event: 10
- Fork event: 2
Last Year
- Push event: 1
Committers metadata
Last synced: 12 months ago
Total Commits: 469
Total Committers: 9
Avg Commits per committer: 52.111
Development Distribution Score (DDS): 0.094
Commits in past year: 1
Committers in past year: 1
Avg Commits per committer in past year: 1.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| hclimente | h****e@g****m | 425 |
| Héctor Climente-González | h****e | 18 |
| Nitesh Turaga | n****a@g****m | 14 |
| hclimente | h****e@c****r | 4 |
| J Wokaty | j****y@s****u | 2 |
| vobencha | v****n@r****g | 2 |
| vobencha | v****a@g****m | 2 |
| Vivien Goepp | v****p@g****m | 1 |
| hclimente | h****e@u****r | 1 |
Committer domains:
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 5
Total pull requests: 5
Average time to close issues: 3 months
Average time to close pull requests: about 10 hours
Total issue authors: 2
Total pull request authors: 2
Average comments per issue: 1.0
Average comments per pull request: 0.2
Merged pull request: 5
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- hclimente (4)
- sukanka (1)
Top Pull Request Authors
- hclimente (4)
- goepp (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- bioconductor: 8,048 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 3
- Total maintainers: 1
bioconductor.org: martini
GWAS Incorporating Networks
- Homepage: https://github.com/hclimente/martini
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/martini/inst/doc/martini.pdf
- Licenses: GPL-3
- Latest release: 1.24.0 (published about 1 year ago)
- Last Synced: 2024-06-10T11:00:33.306Z (11 months ago)
- Versions: 3
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 8,048 Total
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Forks count: 15.267%
- Stargazers count: 19.466%
- Average: 20.265%
- Downloads: 66.592%
- Maintainers (1)
Dependencies
- R >= 4.0 depends
- Matrix * imports
- Rcpp >= 0.12.8 imports
- igraph >= 1.0.1 imports
- methods >= 3.3.2 imports
- snpStats >= 1.20.0 imports
- stats * imports
- utils * imports
- IRanges >= 2.8.2 suggests
- S4Vectors >= 0.12.2 suggests
- STRINGdb >= 2.2.0 suggests
- biomaRt >= 2.34.1 suggests
- circlize >= 0.4.11 suggests
- httr >= 1.2.1 suggests
- knitr * suggests
- memoise >= 2.0.0 suggests
- readr * suggests
- rmarkdown * suggests
- testthat * suggests
- actions/cache v2 composite
- actions/checkout v2 composite
- actions/upload-artifact master composite
- docker/build-push-action v1 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
Score: 12.576822077549844