https://github.com/zhilongjia/cogena
co-expressed gene-set enrichment analysis
https://github.com/zhilongjia/cogena
Keywords
bioconductor bioinformatics package r
Keywords from Contributors
genomics transcriptome mass-spectrometry visualisation spatial-proteomics proteomics proteomics-data missing-values rpackage stochastic-gradient-descent
Last synced: 11 months ago
JSON representation
Acceptance Criteria
- Revelant topics? true
- External users? true
- Open source license? true
- Active? true
- Fork? false
Repository metadata
co-expressed gene-set enrichment analysis
- Host: GitHub
- URL: https://github.com/zhilongjia/cogena
- Owner: zhilongjia
- Created: 2015-02-13T21:37:54.000Z (about 10 years ago)
- Default Branch: master
- Last Pushed: 2023-11-20T08:18:04.000Z (over 1 year ago)
- Last Synced: 2024-05-31T22:22:44.211Z (11 months ago)
- Topics: bioconductor, bioinformatics, package, r
- Language: R
- Homepage: https://github.com/zhilongjia/cogena
- Size: 42.8 MB
- Stars: 12
- Watchers: 1
- Forks: 7
- Open Issues: 0
- Releases: 0
-
Metadata Files:
- Readme: README.Rmd
Owner metadata
- Name: Zhilong
- Login: zhilongjia
- Email:
- Kind: user
- Description: A bioinformatician.
- Website: http://zhilongjia.github.io/
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/1230436?u=b287139c4eeff7d721fa3100f756641761520baa&v=4
- Repositories: 18
- Last ynced at: 2023-03-24T13:00:12.914Z
- Profile URL: https://github.com/zhilongjia
GitHub Events
Total
- Issues event: 18
- Watch event: 16
- Delete event: 2
- Issue comment event: 15
- Member event: 1
- Push event: 135
- Pull request event: 2
- Fork event: 9
- Create event: 7
Last Year
- Push event: 1
- Watch event: 1
Committers metadata
Last synced: over 1 year ago
Total Commits: 416
Total Committers: 12
Avg Commits per committer: 34.667
Development Distribution Score (DDS): 0.214
Commits in past year: 1
Committers in past year: 1
Avg Commits per committer in past year: 1.0
Development Distribution Score (DDS) in past year: 0.0
| Name | Commits | |
|---|---|---|
| Zhilong Jia | z****a@g****m | 327 |
| z.jia | z****a@b****8 | 59 |
| Dan Tenenbaum | d****a@f****g | 8 |
| Nitesh Turaga | n****a@g****m | 4 |
| d.tenenbaum | d****m@b****8 | 4 |
| Herve Pages | h****s@f****g | 4 |
| Hervé Pagès | h****s@f****g | 2 |
| vobencha | v****n@r****g | 2 |
| Zhilong | z****a | 2 |
| vobencha | v****a@g****m | 2 |
| Sonali Arora | s****a@f****g | 1 |
| s.arora | s****a@b****8 | 1 |
Committer domains:
- fhcrc.org: 3
- roswellpark.org: 1
- fredhutch.org: 1
Issue and Pull Request metadata
Last synced: 11 months ago
Total issues: 9
Total pull requests: 1
Average time to close issues: 5 months
Average time to close pull requests: 16 minutes
Total issue authors: 8
Total pull request authors: 1
Average comments per issue: 1.67
Average comments per pull request: 0.0
Merged pull request: 0
Bot issues: 0
Bot pull requests: 0
Past year issues: 0
Past year pull requests: 0
Past year average time to close issues: N/A
Past year average time to close pull requests: N/A
Past year issue authors: 0
Past year pull request authors: 0
Past year average comments per issue: 0
Past year average comments per pull request: 0
Past year merged pull request: 0
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- IyadSultan (2)
- BastienGamboa (1)
- heylookabed (1)
- limingxiang (1)
- llrs (1)
- nandhinik2 (1)
- puneetvaza (1)
- steph-e (1)
Top Pull Request Authors
- zhilongjia (1)
Top Issue Labels
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- bioconductor: 17,890 total
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 3
- Total maintainers: 1
bioconductor.org: cogena
co-expressed gene-set enrichment analysis
- Homepage: https://github.com/zhilongjia/cogena
- Documentation: https://bioconductor.org/packages/release/bioc/vignettes/cogena/inst/doc/cogena.pdf
- Licenses: LGPL-3
- Latest release: 1.36.0 (published over 1 year ago)
- Last Synced: 2024-05-31T22:22:08.866Z (11 months ago)
- Versions: 3
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 17,890 Total
-
Rankings:
- Dependent repos count: 0.0%
- Dependent packages count: 0.0%
- Average: 15.067%
- Downloads: 45.202%
- Maintainers (1)
Dependencies
- R >= 3.6 depends
- cluster * depends
- ggplot2 * depends
- kohonen * depends
- Biobase * imports
- amap * imports
- apcluster * imports
- biwt * imports
- class * imports
- corrplot * imports
- devtools * imports
- doParallel * imports
- dplyr * imports
- fastcluster * imports
- foreach * imports
- gplots * imports
- mclust * imports
- methods * imports
- parallel * imports
- reshape2 * imports
- stringr * imports
- tibble * imports
- tidyr * imports
- knitr * suggests
- rmarkdown >= 2.1 suggests
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
Score: 14.761866371665825