toxpiR
R package for the Toxicological Priority Index (ToxPi) prioritization algorithm.
https://github.com/ToxPi/toxpiR
Category: Natural Resources
Sub Category: Ecotoxicology
Keywords
data-science modeling r r-package toxicology
Last synced: about 20 hours ago
JSON representation
Repository metadata
toxpiR R package for the Toxicological Priority Index (ToxPi) algorithm.
- Host: GitHub
- URL: https://github.com/ToxPi/toxpiR
- Owner: ToxPi
- License: gpl-3.0
- Created: 2022-02-02T20:42:05.000Z (about 3 years ago)
- Default Branch: main
- Last Pushed: 2024-12-11T15:49:46.000Z (5 months ago)
- Last Synced: 2025-02-10T18:01:52.451Z (3 months ago)
- Topics: data-science, modeling, r, r-package, toxicology
- Language: R
- Homepage: https://toxpi.github.io/toxpiR/index.html
- Size: 13.7 MB
- Stars: 11
- Watchers: 2
- Forks: 4
- Open Issues: 3
- Releases: 3
-
Metadata Files:
- Readme: README.md
- Changelog: NEWS.md
- Contributing: CONTRIBUTING.md
- License: LICENSE.md
README.md
toxpiR
R package for the Toxicological Priority Index (ToxPi) prioritization algorithm.
Package developed and maintained by the Reif Lab.
Installation
Current stable release (CRAN):
install.packages("toxpiR")
Current stable release (Build from GitHub):
remotes::install_github("ToxPi/toxpiR",
dependencies = TRUE)
Note: Users may need to ensure "remotes" package and packages
requiring "BiocManager" are installed before building package.
if (!require(remotes)) install.packages("remotes")
if (!require(BiocManager, quietly = TRUE)) {
install.packages("BiocManager")
}
BiocManager::install(c("S4Vectors","BiocGenerics"))
Current stable release (Build from GitHub with vignettes):
remotes::install_github("ToxPi/toxpiR",
dependencies = TRUE,
build_vignettes = TRUE)
Note: Building packages with vignettes requires the package
"pandoc" to be installed.
Owner metadata
- Name: ToxPi
- Login: ToxPi
- Email:
- Kind: organization
- Description:
- Website: https://toxpi.org
- Location:
- Twitter:
- Company:
- Icon url: https://avatars.githubusercontent.com/u/65192026?v=4
- Repositories: 1
- Last ynced at: 2023-03-11T09:35:11.595Z
- Profile URL: https://github.com/ToxPi
GitHub Events
Total
- Issues event: 2
- Watch event: 2
- Push event: 1
- Create event: 1
Last Year
- Issues event: 2
- Watch event: 2
- Push event: 1
- Create event: 1
Committers metadata
Last synced: 5 days ago
Total Commits: 48
Total Committers: 7
Avg Commits per committer: 6.857
Development Distribution Score (DDS): 0.458
Commits in past year: 3
Committers in past year: 2
Avg Commits per committer in past year: 1.5
Development Distribution Score (DDS) in past year: 0.333
| Name | Commits | |
|---|---|---|
| Dayne Filer | d****r@g****m | 26 |
| SkylarMarvel | s****l@n****u | 11 |
| Dillon Lloyd | 5****6 | 3 |
| David Reif | 4****f | 3 |
| Preethi Thunga | p****a@n****u | 2 |
| Jonathon Fleming | j****9@g****m | 2 |
| Jonathon-Fleming | 6****g | 1 |
Committer domains:
- ncsu.edu: 2
Issue and Pull Request metadata
Last synced: 2 days ago
Total issues: 11
Total pull requests: 13
Average time to close issues: 9 months
Average time to close pull requests: 1 day
Total issue authors: 6
Total pull request authors: 5
Average comments per issue: 2.0
Average comments per pull request: 0.15
Merged pull request: 11
Bot issues: 0
Bot pull requests: 0
Past year issues: 4
Past year pull requests: 4
Past year average time to close issues: 2 days
Past year average time to close pull requests: 3 days
Past year issue authors: 3
Past year pull request authors: 2
Past year average comments per issue: 0.5
Past year average comments per pull request: 0.25
Past year merged pull request: 4
Past year bot issues: 0
Past year bot pull requests: 0
Top Issue Authors
- daynefiler (5)
- mattjmeier (2)
- flemingjf (1)
- patlewig (1)
- ndaly15 (1)
- qianyulia (1)
Top Pull Request Authors
- daynefiler (6)
- flemingjf (3)
- SkylarMarvel (2)
- davidmreif (1)
- ghost (1)
Top Issue Labels
- enhancement (4)
- help wanted (1)
- documentation (1)
Top Pull Request Labels
Package metadata
- Total packages: 1
-
Total downloads:
- cran: 229 last-month
- Total dependent packages: 0
- Total dependent repositories: 0
- Total versions: 4
- Total maintainers: 1
cran.r-project.org: toxpiR
Create ToxPi Prioritization Models
- Homepage: https://github.com/ToxPi/toxpiR
- Documentation: http://cran.r-project.org/web/packages/toxpiR/toxpiR.pdf
- Licenses: GPL (≥ 3)
- Latest release: 1.3.0 (published 8 months ago)
- Last Synced: 2025-04-25T05:31:10.503Z (2 days ago)
- Versions: 4
- Dependent Packages: 0
- Dependent Repositories: 0
- Downloads: 229 Last month
-
Rankings:
- Forks count: 21.888%
- Stargazers count: 26.172%
- Dependent packages count: 29.797%
- Dependent repos count: 35.455%
- Average: 37.582%
- Downloads: 74.601%
- Maintainers (1)
Dependencies
- actions/checkout v2 composite
- r-lib/actions/check-r-package v1 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
- r-lib/actions/setup-r-dependencies v1 composite
- actions/checkout v2 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
- r-lib/actions/setup-r-dependencies v1 composite
- actions/checkout v2 composite
- r-lib/actions/setup-r v1 composite
- r-lib/actions/setup-r-dependencies v1 composite
- R >= 4.0 depends
- BiocGenerics * imports
- S4Vectors * imports
- grDevices * imports
- grid * imports
- methods * imports
- pryr * imports
- rlang * imports
- stats * imports
- tidyr * imports
- utils * imports
- DBI * suggests
- covr * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat >= 3.0.0 suggests
Score: 10.023046787593767