Categories - Biosphere

Sub Categories

Topics

fisheries, bioacoustics, fish, species, biodiversity-informatics, marine-biology, gbif, wildfire, biodiversity-data, traits, ebird, birds, protected-areas, species-distribution-modelling, deforestation, wildlife, forest, fisheries-stock-assessment, forest-inventory, stock-assessment, reforestation, forests, birdsong, deforestation-risk, population-dynamics, biogeography, fisheries-management, taxize, camera-traps, phenology, spocc, acoustic-monitoring, flnr, dendrochronology, stock-synthesis, assessment, bioinformatics, darwin-core, inaturalist, wildfire-forecasting, nomenclature, las, laser-scanning, flnro, species-distribution-modeling, dynamic, demography, bird-migration, niche-modelling, forest-monitoring, nature, phylogenetic-diversity, ecology-modelling, plankton, vertnet, ecological-niche-modelling, dendroecology, evolution, species-interactions, animal-movement, forest-management, insects, obis, movement-ecology, marine-species, tree-rings, species-sensitivity-distribution, biodiversity-monitoring, phylogeny, clip, globalfishingwatch, animals, niche-modeling, salmon, dwc, biodiversity-standards, animal, forest-cover-change, ipbes, land-use-change, world, vegetation-period, vegetation-dynamics, megadetector, biodiversity-scenario, tropical-forests, life, protected-planet, trees, redd, spatial-modelling, roads, spatial-autocorrelation, phenocam, strandings, marine-wildlife-incidents, bien, marine-turtles, resource-assessment, conservation-bio, species-occurrence, occurrence, soil-quality-degradation, ssurgo, idigbio, ecoengine, bison, antweb, forest-planning, fmt, detectron2, digital-forestry-toolbox, octave, cart, functional-trait, conservation-assessment-ranking, functional-ecology, functional-diversity, conservation-practices, intrinsic-soil-properties, biodiversity-indicators, land-unit, rarefaction, scattering, ranking, sapwood, ranking-tool, zoology, cnpq, windspeed, tracker, pressure-sensor, migration, geolocator, datalogger, p-model, growth, dgvm, range-maps, botanical, als, plantcv, plant-phenotyping, sound-pressure-level, signal-processing, ecoacoustics, acoustic-indices, species-identification, public-health, offline-first, mobile-data-collection, household-surveys, field-survey, field-data-collection, water-quality-guideline, ssd, raspberry-pi-camera, raspberry-pi-4, planktoscope, microscopy, microscope-platform, microscope, imaging, citizen, usda-nrcs, mapme, biologging, animal-tracking, land-surface-phenology, jags, national-science-foundation, meta-analysis, ecosystem-science, cyberinfrastructure, mechanistic-models, solidity, smart-contracts, ipfs, greenpill, foundry, attestations, rcpp, qsm, watering, citylab-berlin, describe, collections, fishbase, shinyapps, laz, openlayers, fishing-vessels, verified-carbon-standard, fishing, outbreak, disturbance, annotation-framework, defoliators, budworm, image-annotation, tidymodels, onnx, keypoint-detection, video-analysis, video-analytics, spatiotemporal-dynamics, video-annotation, spatio-temporal-analysis, ornithology, video-search, movement, bird-survey, adaptive-spatio-temporal-exploratory-model, tree-canopy, transitions, shifts, tree-detection, pharo, multi-agent-systems, multi-agent-simulation, indivisual-based-modeling, wfd, sampling, freshwater, electrofishing, diversity, aspe, entropy-partitioning, estimator, trade, amazonia, endangered-species, datazoom, municipality, canopy-height-models, openplantpathology, cites, forest-analysis, forest-conservation, caribou, jurisdictional-and-nested-redd, rarity, ecological-models, prefect, multimodal, surveillance, networks, jerico-relevant, biological-data, conservation-prioritization, sound, ecological-niche-modeling, shad, management-strategy-evaluation, individual-based, diversity-measurement, partitioning-diversity, herring, fish-passage, greenness-exposure, dam, stream-network, shiny-r, fiss, fish-observations, spatial-graphs, landscape-connectivity, asprs, habitat-connectivity, trait-based, functional-traits, points, indicators, critical, tree-pixels, compliance-check, catastrophic, forestfire, marine-traffics, marine-resources, impact-assessment, forest-loss, bio-economics, aquaculture, portal, cumulative-impacts, prz, cons-tech, tomcat, epidemiology, ecosystem-simulation, wildfires, satellites, journalism, firms, data-journalism, zero-shot-classification, rare-species, invasives, ecosystem-status-report, data-analysis-r, plugins, interactive-visualization, desktop-application, metapackage, habitat, forestgeo, fgeo, dynamics, abundance, tree-mapping, space-time, inventories, forest-variables, fia-datamart, fia-database, fia, compute-estimates, fish-stocks, fao-manual, resolution, reconciliation, marine-protected-areas, maxent, wdpa, ala, poisson-process, integrated-framework, rbp, periphyton, metric, macorinvertebrates, biomonitoring, bioassessment, benthic, yolov5, classifier-model, cameratraps, annotation-tool, restoration, tunning, maxent-models, enmeval, mediterranean, sst, aims, geonature-citizen, geonature, tropical-forest, hyperspectral-imaging, diversity-mapping, ionic-framework, country-iso-code, SimRoot, Root architecture, Plant biology, Nutrient uptake, Functional Structural Plant model, behavior, acoustic-signals, vegetation-phenology, phenology-models, model-calibration, streamline-analysis, spectrogram, animal-acoustic-signals, iucn-red-list, iucn, species-observed, sampling-effort, reported-species, data-gaps, phenology-modelling, phenocam-data, fire-effects, biomass, plant-trees, crowns, public-science, mantis-religiosa, mantis, gottesanbeterin, brandenburg, species-turnover, randomisations, phylogeography, phylogenetic-trees, phylodiversity, endemism, biodiverse, beta-diversity, soil-thermal-dynamics, permafrost-dynamics, fire-dynamics, carbon-cycling, spades, landscape-ecosystem-modelling, avian, fire, ala-product-digivol, pytorch-wildlife, noaa-fisheries, groundfish, alaska, active-learning, spatially-structured-validation, spatial-ecology, model-tuning, model-fit-for-purpose, ensemble-modelling, sonar, ek80, ek60, echosounder, azfp, gfw, esri-js, plant-physiology, pollinators, parasites, globi, food-webs, etl-framework, eol, diseases, diet, xmp, iptc, hierarchical-keywords, exif, sims, plant-genetic-resources, phenotypes, pedigree, germinate, genotypes, genetics, chemical-compounds, transport-equation, size-structure, marine-ecosystem, fish-population-dynamics, tdwg, environmental-modeling, specimen, cbm-cfs3, lidar-point-cloud, birdnet, birding, trillion-trees, cffdrs, bcws, half-earth, arcgisjs, r-packages, dam-impact-analysis, hut23-240, ala-product-ala4r, react-leaflet, openshift, object-store, material-ui, keycloak, biohub, continuous-integration, carbon-capture-sequestration, fishr-website, national-phenology-network, tmb, glmm, bdc, ais-data, ais, openfisheries, knowledge-guided-machine-learning, imageomics, invasive-species, lter-science, global-fishing-watch, fishing-effort, fisheries-research, spatial-predictions, spatial-grain, scenarios, earthenv, chelsa, bioclim, bats, noaa-nsap, wsr-88d, nexrad, eumetnet-opera, enram, aeroecology, whales, realtime, orcas, inference, audio-analysis, prioritization, conservation-planner, picture, vocalizations, torchvision, speech-processing, spectrograms, bioacoustic-analysis, animal-vocalizations, animal-communication, natural-hazard, wlrs,

Projects

Contributors

Daniel Morrison [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Marine Life and Fishery
Topics:

Hansen Johnson [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Marine Life and Fishery
Topics:

Heather Foley [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Marine Life and Fishery
Topics:

Kate McPherson [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Marine Life and Fishery
Topics:

Heather Pettis [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Marine Life and Fishery
Topics:

Isaac Newton [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Deforestation and Reforestation, Forest Observation and Management
Topics: amazonia, datazoom, municipality

FranciscoCavalcanti [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Deforestation and Reforestation, Forest Observation and Management
Topics: amazonia, datazoom, municipality

Hernán Lucas Pereira [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, biodiversity-informatics, collections, describe, evolution, life, nomenclature, species, taxonomy, digitization and 10 more

mbeckman [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, biodiversity-informatics, collections, describe, evolution, life, nomenclature, species, taxonomy

Geoff Ower [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, biodiversity-informatics, collections, describe, evolution, life, nomenclature, species, taxonomy, informatics and 16 more

Cory Schnepper [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Citizen Science
Topics:

jo-spek [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Deforestation and Reforestation
Topics:

Marcos Davidovich [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Conservation and Restoration
Topics:

BAGGIO_R [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Wildfire
Topics:

Matthew D. Lisk [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics
Topics:

MNeverOff [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management
Topics: biodiversity, forestry, geopandas

Colin Millar [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Marine Life and Fishery
Topics:

Adriana Villamor [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Marine Life and Fishery
Topics:

Adriana [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Marine Life and Fishery
Topics:

marcadella [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics: dgvm, growth, p-model, vegetation-dynamics

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Philip Mostert [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics:

Stuart MacKay [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Avian Monitoring and Analysis
Topics: ebird, scraper

Alexandre MacPhail [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Bioacoustics and Acoustic Data Analysis
Topics: bioacoustics, biodiversity-data

Jason Ernst [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Wildfire
Topics: bcws, cffdrs, flnr, weather, wildfire, dds

Ubuntu [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management
Topics:

James J Balamuta [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management
Topics:

brunobrr [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Cleaning and Standardization
Topics: bdc, biodiversity-data

Jim Allman [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management
Topics:

Cody Hinchliff [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management
Topics:

zbolander [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management
Topics:

Arlin Stoltzfus [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management
Topics:

James Emberton [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Plants and Vegetation
Topics:

Jeff Oliver [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics
Topics:

Erin Zylstra [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics
Topics:

Natalie Melkonoff [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Analysis and Metrics
Topics:

mjanssens [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Bioacoustics and Acoustic Data Analysis
Topics: android-app, birding, birdnet, birdsong

Joedmin [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Bioacoustics and Acoustic Data Analysis
Topics: android-app, birding, birdnet, birdsong

JoshOBrien [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Wildfire
Topics: landscape, landscape-ecology, gdal, geos, proj, skeleton, devtools

Bart bart@myotis

OST Projects: 1
Categories: Biosphere
Sub Categories: Avian Monitoring and Analysis
Topics: graph-neural-networks, meteorological-data, point-cloud, aeroecology, enram, eumetnet-opera, lifewatch, movement-ecology, nexrad, oscibio and 3 more

cschwarz-stat-sfu-ca [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics: flnr, ecotoxicology, species-sensitivity-distribution

Sarah Lyons [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Species Distribution Modeling
Topics: ecotoxicology, species-sensitivity-distribution

maRce10 [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Bioacoustics and Acoustic Data Analysis
Topics: compendium, research, bioacoustics, birdsong, cultural-evolution, phylogenetics, bats, behavior, dimorphism, animal-acoustic-signals and 2 more

Pasi Raumonen [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management, Forest Remote Sensing
Topics:

Grace Smith Vidaurre [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Bioacoustics and Acoustic Data Analysis
Topics: animal-acoustic-signals, bioacoustics, spectrogram, streamline-analysis

tiagodc [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management, Forest Remote Sensing
Topics: asprs, las, laz

Tiago de Conto [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management, Forest Remote Sensing
Topics:

Claudia Vitolo [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Wildfire
Topics: calibration, geospatial-data, natural-hazard, verification, wildfire

bzivkovic [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management
Topics: esri-js, gfw, gfw-fires

Patrick Moran [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management
Topics: esri-js, gfw

Robert Winterbottom [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management
Topics: esri-js, gfw, gfw-fires, forest-atlas

Anthony Amaro [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management
Topics: esri-js, gfw

Timur Girgin [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management
Topics: esri-js, gfw

Lucas Cotner [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management
Topics: esri-js, gfw

EDiLD [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, biology, darwincore, nomenclature, taxize, taxonomy, ecological-modelling, ecology, ordination

Zachary Foster [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, biology, darwincore, nomenclature, taxize, taxonomy

Thomas Maschler [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management
Topics: esri-js, gfw

Tim [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, biology, darwincore, nomenclature, taxize, taxonomy, auto-formatter, cleaner, formatter, isort and 2 more

Luis J. Villanueva [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, biology, darwincore, nomenclature, taxize, taxonomy, gbif, museum-collections, occurrences, shiny and 1 more

Anthony Amaro [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management
Topics: esri-js, gfw

taddallas [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, biology, darwincore, nomenclature, taxize, taxonomy, ecology, metacommunity, bipartite-network, ecological-network and 3 more

Sriram Ramesh [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, gbif, lifewatch, oscibio, species, spocc

c.kuppe c.kuppe@IBG2440

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management, Plants and Vegetation
Topics: Functional Structural Plant model, Nutrient uptake, Plant biology, Root architecture, SimRoot

jhpoelen [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, bioinformatics, biology, diet, diseases, ecoinformatics, ecology, eol, etl-framework, food-webs and 38 more

Jorrit Poelen [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, bioinformatics, biology, diet, diseases, ecoinformatics, ecology, eol, etl-framework, food-webs and 16 more

James Simons [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, bioinformatics, biology, diet, diseases, ecoinformatics, ecology, eol, etl-framework, food-webs and 4 more

reiz [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Biodiversity Data Access and Management, Biodiversity and Species Distribution
Topics: biodiversity, bioinformatics, biology, diet, diseases, ecoinformatics, ecology, eol, etl-framework, food-webs and 4 more

jouke.postma [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management, Plants and Vegetation
Topics: Functional Structural Plant model, Nutrient uptake, Plant biology, Root architecture, SimRoot

Johannes A. Postma [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management, Plants and Vegetation
Topics: Functional Structural Plant model, Nutrient uptake, Plant biology, Root architecture, SimRoot

ckfzj [email protected]

OST Projects: 1
Categories: Biosphere
Sub Categories: Forest Observation and Management, Plants and Vegetation
Topics: Functional Structural Plant model, Nutrient uptake, Plant biology, Root architecture, SimRoot