Data

Tools

Indexes

Applications

Experiments

Open Sustainable Technology

https://github.com/biosteamdevelopmentgroup/thermosteam

Thermosteam: BioSTEAM's Premier Thermodynamic Engine - Published in JOSS (2020)
chemical chemical-engineering equations-of-state liquid-liquid-equilibrium material-and-energy-balance mixture properties reaction thermodynamics vapor-liquid-equilibrium
Added: 10 months ago - Last Synced: 10 months ago - Created: November 02, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1285
  • Committers: 7
  • Issues: 72
  • Pull Requests: 27
https://github.com/scikit-hep/pyhf

pyhf: pure-Python implementation of HistFactory statistical models - Published in JOSS (2021)
asymptotic-formulas closember cls frequentist-statistics hep hep-ex high-energy-physics histfactory jax numpy python scientific-computations scikit-hep scipy statistical-inference statistics
Added: 10 months ago - Last Synced: 10 months ago - Created: January 24, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1451
  • Committers: 36
  • Issues: 124
  • Pull Requests: 492
  • Owner: scikit-hep
  • Stars: 291
  • Forks: 90
  • Packages: 2
  • Downloads: 1,253,052
https://github.com/dynamicslab/pysensors

PySensors: A Python package for sparse sensor placement - Published in JOSS (2021)
optimization-tools sensor sensor-placement sensors
Added: 10 months ago - Last Synced: 10 months ago - Created: May 01, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 396
  • Committers: 10
  • Issues: 8
  • Pull Requests: 29
  • Owner: dynamicslab
  • Stars: 103
  • Forks: 25
  • Packages: 1
  • Downloads: 1,730
https://github.com/learningsimulator/learningsimulator

Learning Simulator: A simulation software for animal and human learning - Published in JOSS (2021)
associative-learning behavior gui mathematical-modelling python reinforcement-learning simulation
Added: 10 months ago - Last Synced: 10 months ago - Created: November 25, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 313
  • Committers: 3
  • Issues: 76
  • Pull Requests: 25
https://github.com/ghislainv/forestatrisk

forestatrisk: a Python package for modelling and forecasting deforestation in the tropics - Published in JOSS (2021)
biodiversity-scenario co2-emissions deforestation deforestation-risk forecasting forest-cover-change ipbes ipcc land-use-change protected-areas python redd roads spatial-analysis spatial-autocorrelation spatial-modelling tropical-forests
Added: 10 months ago - Last Synced: 10 months ago - Created: December 01, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 688
  • Committers: 7
  • Issues: 38
  • Pull Requests: 53
  • Owner: ghislainv
  • Stars: 129
  • Forks: 30
  • Packages: 2
  • Downloads: 950
https://github.com/opengeos/lidar

lidar: A Python package for delineating nested surface depressions from digital elevation data - Published in JOSS (2021)
digital-elevation-model gis hydrological image-processing lidar python remote-sensing terrain-analysis
Added: 10 months ago - Last Synced: 10 months ago - Created: May 14, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 206
  • Committers: 6
  • Issues: 24
  • Pull Requests: 49
  • Owner: opengeos
  • Stars: 291
  • Forks: 54
  • Packages: 1
  • Downloads: 1,184
https://github.com/polsartools/PolSARtools-QGIS

PolSAR tools: A QGIS plugin for generating SAR descriptors - Published in JOSS (2021)
polarimetric-decompositions polarimetric-sar-data qgis3-plugin radar-vegetation sar
Added: 10 months ago - Last Synced: 10 months ago - Created: February 06, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 267
  • Committers: 5
  • Issues: 2
  • Pull Requests: 1
https://github.com/isoverse/isoreader

Isoreader: An R package to read stable isotope data files for reproducible research - Published in JOSS (2021)
data ecology geochemistry isotopes r
Added: 10 months ago - Last Synced: 10 months ago - Created: May 08, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 815
  • Committers: 3
  • Issues: 55
  • Pull Requests: 47
  • Owner: isoverse
  • Stars: 11
  • Forks: 5
  • Packages: 0
https://github.com/didiermurillof/fieldhub

FielDHub: A Shiny App for Design of Experiments in Life Sciences - Published in JOSS (2021)
agricultural breeding design doe experimental plantbreeding r rstats shiny
Added: 10 months ago - Last Synced: 10 months ago - Created: February 22, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: HTML
  • Commits: 360
  • Committers: 9
  • Issues: 24
  • Pull Requests: 40
  • Owner: DidierMurilloF
  • Stars: 53
  • Forks: 23
  • Packages: 1
  • Downloads: 950
https://github.com/andreasmang/claire

CLAIRE: Constrained Large Deformation Diffeomorphic Image Registration on Parallel Computing Architectures - Published in JOSS (2021)
image-registration medical-image-computing parallel-computing
Added: 10 months ago - Last Synced: 10 months ago - Created: May 12, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 1179
  • Committers: 35
  • Issues: 14
  • Pull Requests: 1
https://github.com/exoplanet-dev/exoplanet

exoplanet: Gradient-based probabilistic inference for exoplanet data & other astronomical time series - Published in JOSS (2021)
astronomy astrophysics bayesian-inference exoplanet exoplanet-radial-velocities exoplanet-transits exoplanets gaussian-processes mcmc pymc3 time-series time-series-analysis
Added: 10 months ago - Last Synced: 10 months ago - Created: June 20, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1210
  • Committers: 17
  • Issues: 50
  • Pull Requests: 142
  • Owner: exoplanet-dev
  • Stars: 225
  • Forks: 54
  • Packages: 2
  • Downloads: 11,800
https://github.com/jofmi/agentpy

AgentPy: A package for agent-based modeling in Python - Published in JOSS (2021)
abm agent-based-modeling agent-based-simulation agentpy complex-systems networks networkx python salib
Added: 10 months ago - Last Synced: 10 months ago - Created: June 19, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 312
  • Committers: 6
  • Issues: 43
  • Pull Requests: 27
  • Owner: jofmi
  • Stars: 358
  • Forks: 41
  • Packages: 0
https://github.com/datalad/datalad

DataLad: distributed system for joint management of code, data, and their relationship - Published in JOSS (2021)
closember data-storage dataset git-annex python usable
Added: 10 months ago - Last Synced: 10 months ago - Created: November 01, 2013

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 13447
  • Committers: 61
  • Issues: 302
  • Pull Requests: 378
  • Owner: datalad
  • Stars: 612
  • Forks: 115
  • Packages: 2
  • Downloads: 32,880
https://github.com/amrex-astro/nyx

Nyx: A Massively Parallel AMR Code for Computational Cosmology - Published in JOSS (2021)
amrex cosmology
Added: 10 months ago - Last Synced: 10 months ago - Created: August 02, 2016

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 2177
  • Committers: 34
  • Issues: 27
  • Pull Requests: 81
https://github.com/virgesmith/neworder

neworder: a dynamic microsimulation framework for Python - Published in JOSS (2021)
cplusplus-20 markov-chain microsimulation monte-carlo mpi numpy pandas pybind11 python3
Added: 10 months ago - Last Synced: 10 months ago - Created: November 25, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 998
  • Committers: 6
  • Issues: 64
  • Pull Requests: 29
  • Owner: virgesmith
  • Stars: 20
  • Forks: 4
  • Packages: 1
  • Downloads: 838
https://github.com/mlr-org/mcboost

mcboost: Multi-Calibration Boosting for R - Published in JOSS (2021)
bias-correction bias-detection classification ethics fairness fairness-ai fairness-ml machine-learning post-processing responsible-ai
Added: 10 months ago - Last Synced: 10 months ago - Created: December 28, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 298
  • Committers: 8
  • Issues: 38
  • Pull Requests: 8
  • Owner: mlr-org
  • Stars: 33
  • Forks: 4
  • Packages: 1
  • Downloads: 325
https://github.com/derrynknife/surpyval

SurPyval: Survival Analysis with Python - Published in JOSS (2021)
actuarial-science churn-prediction non-parametric parametric-distribution parametric-methods probability-plot reliability reliability-analysis reliability-engineering risk-analysis survival-analysis weibull
Added: 10 months ago - Last Synced: 10 months ago - Created: December 15, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 668
  • Committers: 7
  • Issues: 36
  • Pull Requests: 15
  • Owner: derrynknife
  • Stars: 48
  • Forks: 5
  • Packages: 1
  • Downloads: 13,503
https://github.com/roshansamuel/saras

SARAS: A general-purpose PDE solver for fluid dynamics - Published in JOSS (2021)
blitz computational-fluid-dynamics mpi navier-stokes-equations parallel-computing saras
Added: 10 months ago - Last Synced: 10 months ago - Created: February 01, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 45
  • Committers: 1
  • Issues: 4
  • Pull Requests: 0
https://github.com/liangliangnan/easy3d

Easy3D: a lightweight, easy-to-use, and efficient C++ library for processing and rendering 3D data - Published in JOSS (2021)
3d-modeling computer-graphics data-structure geometry-processing graph mesh opengl point-cloud polyhedral-mesh reconstruction rendering shader surface-mesh viewer visualization
Added: 10 months ago - Last Synced: 10 months ago - Created: November 28, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 3612
  • Committers: 11
  • Issues: 126
  • Pull Requests: 15
https://github.com/mpi4jax/mpi4jax

mpi4jax: Zero-copy MPI communication of JAX arrays - Published in JOSS (2021)
gpu high-performance-computing jax jit mpi parallel-computing xla
Added: 10 months ago - Last Synced: 10 months ago - Created: July 21, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 300
  • Committers: 7
  • Issues: 49
  • Pull Requests: 170
  • Owner: mpi4jax
  • Stars: 496
  • Forks: 33
  • Packages: 4
  • Downloads: 1,461
https://github.com/jessecambon/tidygeocoder

tidygeocoder: An R package for geocoding - Published in JOSS (2021)
geocoding r rspatial rstats tidyverse
Added: 10 months ago - Last Synced: 10 months ago - Created: September 19, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 666
  • Committers: 9
  • Issues: 52
  • Pull Requests: 60
  • Owner: jessecambon
  • Stars: 295
  • Forks: 21
  • Packages: 3
  • Downloads: 13,950
https://github.com/saran-nns/sorn

sorn: A Python package for Self Organizing Recurrent Neural Network - Published in JOSS (2021)
associative-networks autonomous-agents bolzmann-machines brain-inspired-computing complex-networks cortical-learning cortical-network hebbian-learning hopfield-network machine-learning neuro-computing neuroinformatics neuroplasticity point-neurons reinforcement-learning reservoir-computing self-organizing-criticality self-organizing-network sorn
Added: 10 months ago - Last Synced: 10 months ago - Created: March 09, 2019

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 948
  • Committers: 2
  • Issues: 23
  • Pull Requests: 24
  • Owner: Saran-nns
  • Stars: 38
  • Forks: 3
  • Packages: 1
  • Downloads: 799
https://github.com/tbep-tech/tbeptools

tbeptools: An R package for synthesizing estuarine data for environmental research - Published in JOSS (2021)
data-analysis package tampa-bay tbep water-quality
Added: 10 months ago - Last Synced: 10 months ago - Created: May 02, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: HTML
  • Commits: 1085
  • Committers: 8
  • Issues: 55
  • Pull Requests: 9
  • Owner: tbep-tech
  • Stars: 10
  • Forks: 3
  • Packages: 0
https://github.com/dmey/synthia

Synthia: multidimensional synthetic data generation in Python - Published in JOSS (2021)
augmentation climate copula data-augmentation data-generation data-generator data-modelling data-science dependency-analysis dependency-modeling finance fpca functional-data machine-learning oversampling principal-component-analysis statistics synthetic-data weather xarray
Added: 10 months ago - Last Synced: 10 months ago - Created: March 01, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 59
  • Committers: 4
  • Issues: 11
  • Pull Requests: 21
  • Owner: dmey
  • Stars: 64
  • Forks: 10
  • Packages: 1
  • Downloads: 73
https://github.com/andr1976/hyddown

HydDown: A Python package for calculation of hydrogen (or other gas) pressure vessel filling and discharge - Published in JOSS (2021)
blow-down coolprop depressurisation gas-phase heat-transfer pressure python relief-valve thermodynamics
Added: 10 months ago - Last Synced: 10 months ago - Created: March 30, 2021

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 601
  • Committers: 4
  • Issues: 17
  • Pull Requests: 84
  • Owner: andr1976
  • Stars: 36
  • Forks: 8
  • Packages: 1
  • Downloads: 60
https://github.com/mrc-ide/individual

individual: An R package for individual-based epidemiological models - Published in JOSS (2021)
agent-based-modeling epidemiology individual-based-modelling infectious-diseases r r-package rstats
Added: 10 months ago - Last Synced: 10 months ago - Created: December 17, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 499
  • Committers: 7
  • Issues: 30
  • Pull Requests: 71
  • Owner: mrc-ide
  • Stars: 30
  • Forks: 17
  • Packages: 1
https://github.com/npucino/sandpyper

sandpyper: A Python package for UAV-SfM beach volumetric and behavioural analysis - Published in JOSS (2021)
beach coastal-dynamics erosion remote-sensing satellite-data shoreline uav-imagery
Added: 10 months ago - Last Synced: 10 months ago - Created: February 22, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 499
  • Committers: 2
  • Issues: 8
  • Pull Requests: 9
  • Owner: npucino
  • Stars: 11
  • Forks: 1
  • Packages: 1
  • Downloads: 56
https://github.com/kineticstoolkit/kineticstoolkit

Kinetics Toolkit: An Open-Source Python Package to Facilitate Research in Biomechanics - Published in JOSS (2021)
api biomechanics kinematics kinetics python toolbox
Added: 10 months ago - Last Synced: 10 months ago - Created: May 28, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 618
  • Committers: 5
  • Issues: 81
  • Pull Requests: 7
https://github.com/swe-unistuttgart/qlunc

Qlunc: Quantification of lidar uncertainty - Published in JOSS (2021)
jupyterlab openlidar python uncertainty wind-lidar
Added: 10 months ago - Last Synced: 10 months ago - Created: May 04, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 2068
  • Committers: 6
  • Issues: 13
  • Pull Requests: 96
https://github.com/galsci/pysm

The Python Sky Model 3 software - Published in JOSS (2021)
cosmic-microwave-background cosmology healpix healpy mpi python
Added: 10 months ago - Last Synced: 10 months ago - Created: December 12, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 1164
  • Committers: 14
  • Issues: 83
  • Pull Requests: 108
  • Owner: galsci
  • Stars: 39
  • Forks: 30
  • Packages: 1
  • Downloads: 3,685
https://github.com/savage13/sacio

sacio: A library for Seismic Analysis Code data files - Published in JOSS (2021)
c iris sac sacio-library seismic
Added: 10 months ago - Last Synced: 10 months ago - Created: July 27, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C
  • Commits: 117
  • Committers: 2
  • Issues: 10
  • Pull Requests: 1
  • Owner: savage13
  • Stars: 8
  • Forks: 3
  • Packages: 0
https://github.com/michaeltouati/esvm

ESVM: an open-source finite volume Electrostatic Vlasov-Maxwell code - Published in JOSS (2021)
electrostatic-wakefield finite-volume landau-damping maxwell plasmas two-stream-instability vlasov
Added: 10 months ago - Last Synced: 10 months ago - Created: October 12, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Fortran
  • Commits: 2360
  • Committers: 6
  • Issues: 10
  • Pull Requests: 7
https://github.com/nextstrain/nextclade

Nextclade: clade assignment, mutation calling and quality control for viral genomes - Published in JOSS (2021)
clade clades coronavirus covid covid-19 covid19 dna influenza ncov neherlab next-generation-sequencing nextstrain research rna sars-cov-2 science sequences sequencing strain virus
Added: 10 months ago - Last Synced: 10 months ago - Created: June 12, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: TypeScript
  • Commits: 5429
  • Committers: 28
  • Issues: 183
  • Pull Requests: 516
  • Owner: nextstrain
  • Stars: 246
  • Forks: 65
  • Packages: 2
  • Downloads: 581
https://github.com/r-spatialecology/shar

shar: An R package to analyze species-habitat associations using point pattern analysis - Published in JOSS (2021)
habitat-association landscape-ecology point-pattern-analysis spatial-analysis
Added: 10 months ago - Last Synced: 10 months ago - Created: January 22, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 625
  • Committers: 9
  • Issues: 50
  • Pull Requests: 71
https://github.com/AndreWeiner/flowtorch

flowTorch - a Python library for analysis and reduced-order modeling of fluid flows - Published in JOSS (2021)
cnm csv davis dmd dynamic-mode-decomposition hdf5 ipsp jupyter machine-learning netcdf openfoam pod proper-orthogonal-decomposition pytorch tau
Added: 10 months ago - Last Synced: 10 months ago - Created: June 24, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 289
  • Committers: 7
  • Issues: 44
  • Pull Requests: 9
https://github.com/ropensci/terrainr

terrainr: An R package for creating immersive virtual environments - Published in JOSS (2022)
cran datasets dems map map-tiles mapping national-map nhd orthoimagery peer-reviewed progressr r r-package retrieve-data rstats terrainr unity unity-rendering-engine usgs
Added: 10 months ago - Last Synced: 10 months ago - Created: September 08, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 366
  • Committers: 3
  • Issues: 47
  • Pull Requests: 25
  • Owner: ropensci
  • Stars: 74
  • Forks: 9
  • Packages: 1
  • Downloads: 719
https://github.com/alan-turing-institute/palaeoanalytics

PyLithics: A Python package for stone tool analysis - Published in JOSS (2022)
hut23 hut23-530
Added: 10 months ago - Last Synced: 10 months ago - Created: October 13, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 575
  • Committers: 3
  • Issues: 35
  • Pull Requests: 77
https://github.com/mbhall88/rasusa

Rasusa: Randomly subsample sequencing reads to a specified coverage - Published in JOSS (2022)
alignment bam bioinformatics coverage downsample fasta fastq genome-analysis random rust subsampling
Added: 10 months ago - Last Synced: 10 months ago - Created: September 26, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Rust
  • Commits: 273
  • Committers: 7
  • Issues: 43
  • Pull Requests: 65
  • Owner: mbhall88
  • Stars: 244
  • Forks: 20
  • Packages: 1
  • Downloads: 18,864
https://github.com/rhenkin/visxhclust

visxhclust: An R Shiny package for visual exploration of hierarchical clustering - Published in JOSS (2022)
clustering data-analysis data-science r r-package r-shiny rstats shiny-apps
Added: 10 months ago - Last Synced: 10 months ago - Created: March 17, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 35
  • Committers: 2
  • Issues: 4
  • Pull Requests: 12
  • Owner: rhenkin
  • Stars: 4
  • Forks: 0
  • Packages: 1
  • Downloads: 240
https://github.com/devsim/devsim

DEVSIM: A TCAD Semiconductor Device Simulator - Published in JOSS (2022)
c-plus-plus devsim finite-volume pde python semiconductor semiconductor-physics tcad tcad-device-simulator
Added: 10 months ago - Last Synced: 10 months ago - Created: March 17, 2013

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 803
  • Committers: 10
  • Issues: 129
  • Pull Requests: 30
  • Owner: devsim
  • Stars: 226
  • Forks: 72
  • Packages: 1
  • Downloads: 9,982
https://github.com/ni1o1/transbigdata

TransBigData: A Python package for transportation spatio-temporal big data processing, analysis and visualization - Published in JOSS (2022)
bike-sharing-data bus-gps-data data-analysis data-pre-processing data-quality-analysis data-visualization geospatial-data python spatio-temporal-data taxi-gps-data transportation
Added: 10 months ago - Last Synced: 10 months ago - Created: October 21, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 613
  • Committers: 9
  • Issues: 52
  • Pull Requests: 48
  • Owner: ni1o1
  • Stars: 522
  • Forks: 118
  • Packages: 2
  • Downloads: 2,040
https://github.com/jhollist/nsink

nsink: An R package for flow path nitrogen removal estimation - Published in JOSS (2022)
eutrophication nitrogen ord rstats sf terra water
Added: 10 months ago - Last Synced: 10 months ago - Created: April 01, 2021

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Fork? false
  • Main Language: R
  • Commits: 322
  • Committers: 3
  • Issues: 18
  • Pull Requests: 9
  • Owner: jhollist
  • Stars: 5
  • Forks: 4
  • Packages: 0
https://github.com/csdms/babelizer

The Babelizer: language interoperability for model coupling in the geosciences - Published in JOSS (2022)
bmi c csdms cxx fortran hacktoberfest pymt python
Added: 10 months ago - Last Synced: 10 months ago - Created: April 05, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 274
  • Committers: 3
  • Issues: 32
  • Pull Requests: 96
  • Owner: csdms
  • Stars: 5
  • Forks: 3
  • Packages: 1
https://github.com/dgbowl/yadg

yadg: yet another datagram - Published in JOSS (2022)
batteries catalysis chromatography data-science electrochemistry parser
Added: 10 months ago - Last Synced: 10 months ago - Created: January 13, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 362
  • Committers: 12
  • Issues: 78
  • Pull Requests: 193
  • Owner: dgbowl
  • Stars: 47
  • Forks: 16
  • Packages: 1
  • Downloads: 1,416
https://github.com/althonos/pyrodigal

Pyrodigal: Python bindings and interface to Prodigal, an efficient method for gene prediction in prokaryotes - Published in JOSS (2022)
bioconda bioinformatics cython-wrapper gene-finding genome metagenomes orf-finder prodigal python python-interface python-library simd
Added: 10 months ago - Last Synced: 10 months ago - Created: April 26, 2020

  • Relevant topics? true
  • External users? true
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  • Main Language: Cython
  • Commits: 853
  • Committers: 5
  • Issues: 59
  • Pull Requests: 11
  • Owner: althonos
  • Stars: 171
  • Forks: 10
  • Packages: 2
  • Downloads: 26,922
https://github.com/cgre-aachen/gemgis

GemGIS - Spatial Data Processing for Geomodeling - Published in JOSS (2022)
geographic geographic-data geomodeling geospatial jupyter jupyter-notebook modeling notebooks processing python raster-data spatial-data vector-data visualization
Added: 10 months ago - Last Synced: 10 months ago - Created: April 25, 2020

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1136
  • Committers: 16
  • Issues: 125
  • Pull Requests: 51
  • Owner: cgre-aachen
  • Stars: 279
  • Forks: 43
  • Packages: 3
  • Downloads: 1,218
https://github.com/pysal/spopt

spopt: a python package for solving spatial optimization problems in PySAL - Published in JOSS (2022)
facility-location location-allocation location-modeling python regionalization resource-planning routing spatial-analysis spatial-optimization transportation
Added: 10 months ago - Last Synced: 10 months ago - Created: March 01, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 871
  • Committers: 23
  • Issues: 113
  • Pull Requests: 130
  • Owner: pysal
  • Stars: 344
  • Forks: 55
  • Packages: 3
  • Downloads: 39,371
https://github.com/c0pep0d/otto

OTTO: A Python package to simulate, solve and visualize the source-tracking POMDP - Published in JOSS (2022)
olfactory-search pomdp reinforcement-learning source-tracking
Added: 10 months ago - Last Synced: 10 months ago - Created: February 10, 2022

  • Relevant topics? false
  • External users? true
  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 146
  • Committers: 1
  • Issues: 5
  • Pull Requests: 1
  • Owner: C0PEP0D
  • Stars: 17
  • Forks: 6
  • Packages: 0
https://github.com/ronshnapp/myptv

MyPTV: A Python Package for 3D Particle Tracking - Published in JOSS (2022)
3d-ptv experiments fluid-mechanics measurements particle-tracking photogrammetry python turbulence
Added: 10 months ago - Last Synced: 10 months ago - Created: March 21, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 318
  • Committers: 3
  • Issues: 35
  • Pull Requests: 6
  • Owner: ronshnapp
  • Stars: 62
  • Forks: 20
  • Packages: 0
https://github.com/open-atmos/PyMPDATA

PyMPDATA v1: Numba-accelerated implementation of MPDATA with examples in Python, Julia and Matlab - Published in JOSS (2022)
advection advection-diffusion atmospheric-modelling numba numerical-integration pde-solver pypi-package python research simulation
Added: 10 months ago - Last Synced: 10 months ago - Created: December 03, 2019

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1114
  • Committers: 18
  • Issues: 80
  • Pull Requests: 384
  • Owner: open-atmos
  • Stars: 30
  • Forks: 22
  • Packages: 2
  • Downloads: 2,988
https://github.com/schochastics/netrankr

netrankr: An R package for total, partial, and probabilistic rankings in networks - Published in JOSS (2022)
network-analysis network-centrality r-package
Added: 10 months ago - Last Synced: 10 months ago - Created: May 09, 2017

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 478
  • Committers: 7
  • Issues: 20
  • Pull Requests: 14
  • Owner: schochastics
  • Stars: 49
  • Forks: 5
  • Packages: 2
  • Downloads: 7,833
https://github.com/chocoteam/choco-solver

Choco-solver: A Java library for constraint programming - Published in JOSS (2022)
constraint-optimisation-problem constraint-programming constraint-satisfaction-problem constraint-solver constraints copr csp java solver
Added: 10 months ago - Last Synced: 10 months ago - Created: November 04, 2011

  • Relevant topics? true
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  • Main Language: Java
  • Commits: 5613
  • Committers: 41
  • Issues: 84
  • Pull Requests: 196
  • Owner: chocoteam
  • Stars: 735
  • Forks: 149
  • Packages: 5
https://github.com/jfowkes/pycutest

PyCUTEst: an open source Python package of optimization test problems - Published in JOSS (2022)
optimization-tools
Added: 10 months ago - Last Synced: 10 months ago - Created: May 31, 2018

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 221
  • Committers: 7
  • Issues: 61
  • Pull Requests: 49
  • Owner: jfowkes
  • Stars: 37
  • Forks: 11
  • Packages: 1
  • Downloads: 960
https://github.com/riatelab/osrm

osrm: Interface Between R and the OpenStreetMap-Based Routing Service OSRM - Published in JOSS (2022)
cran openstreetmap osrm r r-package shortest-paths travel
Added: 10 months ago - Last Synced: 10 months ago - Created: September 11, 2015

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: R
  • Commits: 332
  • Committers: 10
  • Issues: 105
  • Pull Requests: 10
  • Owner: riatelab
  • Stars: 245
  • Forks: 34
  • Packages: 2
  • Downloads: 5,318
https://github.com/beuth-erdelt/dbms-benchmarker

DBMS-Benchmarker: Benchmark and Evaluate DBMS in Python - Published in JOSS (2022)
agplv3 benchmarking dbms jdbc python sql
Added: 10 months ago - Last Synced: 10 months ago - Created: October 06, 2019

  • Relevant topics? true
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  • Open source license? true
  • Active? true
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  • Main Language: HTML
  • Commits: 515
  • Committers: 5
  • Issues: 67
  • Pull Requests: 147
  • Owner: Beuth-Erdelt
  • Stars: 14
  • Forks: 3
  • Packages: 1
  • Downloads: 223
https://github.com/bancaditalia/black-it

Black-it: A Ready-to-Use and Easy-to-Extend Calibration Kit for Agent-based Models - Published in JOSS (2022)
agent-based agent-based-modeling agent-based-simulation calibration-toolbox optimization
Added: 10 months ago - Last Synced: 10 months ago - Created: May 17, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 324
  • Committers: 5
  • Issues: 11
  • Pull Requests: 114
  • Owner: bancaditalia
  • Stars: 55
  • Forks: 2
  • Packages: 1
  • Downloads: 121
https://github.com/chmarti1/pyromat

PYroMat: A Python package for thermodynamic properties - Published in JOSS (2022)
python thermodynamic-properties thermodynamics
Added: 10 months ago - Last Synced: 10 months ago - Created: October 14, 2016

  • Relevant topics? false
  • External users? true
  • Open source license? true
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  • Main Language: Python
  • Commits: 253
  • Committers: 3
  • Issues: 75
  • Pull Requests: 25
  • Owner: chmarti1
  • Stars: 82
  • Forks: 12
  • Packages: 0
https://github.com/ggonnella/fastsubtrees

Fastsubtrees: simple and efficient subtrees extractions in Python with applications to NCBI taxonomy - Published in JOSS (2022)
bioinformatics ncbi-taxonomy python subtree subtree-extraction subtree-query taxonomy tree
Added: 10 months ago - Last Synced: 10 months ago - Created: November 26, 2021

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Python
  • Commits: 482
  • Committers: 4
  • Issues: 25
  • Pull Requests: 2
  • Owner: ggonnella
  • Stars: 4
  • Forks: 0
  • Packages: 5
  • Downloads: 132
https://github.com/connordonegan/geostan

geostan: An R package for Bayesian spatial analysis - Published in JOSS (2022)
bayesian bayesian-inference bayesian-statistics epidemiology modeling public-health r r-package rspatial rstats spatial stan
Added: 10 months ago - Last Synced: 10 months ago - Created: March 18, 2020

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: R
  • Commits: 433
  • Committers: 4
  • Issues: 15
  • Pull Requests: 7
  • Owner: ConnorDonegan
  • Stars: 81
  • Forks: 6
  • Packages: 1
  • Downloads: 879
https://github.com/norwegianveterinaryinstitute/alppaca

ALPPACA - A tooL for Prokaryotic Phylogeny And Clustering Analysis - Published in JOSS (2022)
clustering nextflow phylogeny pipeline
Added: 10 months ago - Last Synced: 10 months ago - Created: August 14, 2020

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Nextflow
  • Commits: 530
  • Committers: 2
  • Issues: 63
  • Pull Requests: 65
https://github.com/vyrjana/deareis

DearEIS - A GUI program for analyzing impedance spectra - Published in JOSS (2022)
electrochemistry impedance impedance-spectroscopy python
Added: 10 months ago - Last Synced: 10 months ago - Created: March 23, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 105
  • Committers: 1
  • Issues: 24
  • Pull Requests: 1
  • Owner: vyrjana
  • Stars: 87
  • Forks: 11
  • Packages: 1
  • Downloads: 412
https://github.com/siavashk/pycpd

PyCPD: Pure NumPy Implementation of the Coherent Point Drift Algorithm - Published in JOSS (2022)
expectation-maximization point-cloud python registration
Added: 10 months ago - Last Synced: 10 months ago - Created: October 23, 2016

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 165
  • Committers: 17
  • Issues: 56
  • Pull Requests: 41
  • Owner: siavashk
  • Stars: 576
  • Forks: 124
  • Packages: 1
  • Downloads: 7,975
https://github.com/gnudatalanguage/gdl

GNU Data Language 1.0: a free/libre and open-source drop-in replacement for IDL/PV-WAVE - Published in JOSS (2022)
antlr astronomy data-analysis dicom eigen3 fits-files geophysics grib gsl-library hdf hdf5 mapping netcdf plotting plplot programming-language pv-wave python scientific-computing scientific-visualization
Added: 10 months ago - Last Synced: 10 months ago - Created: April 04, 2018

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 6789
  • Committers: 53
  • Issues: 365
  • Pull Requests: 346
https://github.com/fbreitwieser/krakenuniq

Metagenomic classification with KrakenUniq on low-memory computers - Published in JOSS (2022)
bioinformatics metagenomics
Added: 10 months ago - Last Synced: 10 months ago - Created: November 11, 2017

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: C++
  • Commits: 497
  • Committers: 16
  • Issues: 93
  • Pull Requests: 10
https://github.com/ianfhunter/gnoll

GNOLL: Efficient Multi-Lingual Software for Real-World Dice Notation and Extensions - Published in JOSS (2023)
board-game c cpp dice dice-notation dice-roller dice-rolls go golang haskell java javascript js julia perl python r roleplaying-games rpg-dice-roller ttrpg
Added: 10 months ago - Last Synced: 10 months ago - Created: May 02, 2019

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Yacc
  • Commits: 1768
  • Committers: 19
  • Issues: 63
  • Pull Requests: 124
  • Owner: ianfhunter
  • Stars: 48
  • Forks: 24
  • Packages: 4
  • Downloads: 222
https://github.com/schochastics/signnet

signnet: An R package for analyzing signed networks - Published in JOSS (2023)
network-analysis signed-networks sna
Added: 10 months ago - Last Synced: 10 months ago - Created: August 14, 2019

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 150
  • Committers: 3
  • Issues: 24
  • Pull Requests: 9
  • Owner: schochastics
  • Stars: 23
  • Forks: 7
  • Packages: 1
  • Downloads: 420
https://github.com/blebon/directchillfoam

directChillFoam: an OpenFOAM application for direct-chill casting - Published in JOSS (2023)
casting computational-fluid-dynamics openfoam simulation
Added: 10 months ago - Last Synced: 10 months ago - Created: May 13, 2020

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: C++
  • Commits: 124
  • Committers: 3
  • Issues: 1
  • Pull Requests: 3
  • Owner: blebon
  • Stars: 12
  • Forks: 6
  • Packages: 0
https://github.com/juliagraphs/multilayergraphs.jl

MultilayerGraphs.jl: Multilayer Network Science in Julia - Published in JOSS (2023)
complex-networks complex-systems discrete-mathematics graph graph-algorithms graph-theory graph-theory-algorithms graph-theory-analysis graphs julia julia-language julia-package multilayer-graphs multilayer-network multilayer-networks multiplex-networks network network-analysis network-science networks
Added: 10 months ago - Last Synced: 10 months ago - Created: May 09, 2022

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Julia
  • Commits: 260
  • Committers: 6
  • Issues: 33
  • Pull Requests: 87
https://github.com/dazhwu/pydynpd

pydynpd: A Python package for dynamic panel model - Published in JOSS (2023)
arellano-bond data dynamic dynamic-panel-data panel system-gmm
Added: 10 months ago - Last Synced: 10 months ago - Created: March 04, 2022

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Main Language: Jupyter Notebook
  • Commits: 345
  • Committers: 3
  • Issues: 9
  • Pull Requests: 4
  • Owner: dazhwu
  • Stars: 31
  • Forks: 8
  • Packages: 1
  • Downloads: 1,298
https://github.com/onroerenderfgoed/atramhasis

Atramhasis: An online SKOS vocabulary editor - Published in JOSS (2023)
app pypi-package python skos thesaurus vocabulary
Added: 10 months ago - Last Synced: 10 months ago - Created: April 08, 2014

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 1722
  • Committers: 27
  • Issues: 97
  • Pull Requests: 8
https://github.com/polca/unfold

unfold: removing the barriers to sharing and reproducing prospective life-cycle assessment databases - Published in JOSS (2023)
ecoinvent premise prospective scenario
Added: 10 months ago - Last Synced: 10 months ago - Created: November 13, 2022

  • Relevant topics? true
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Jupyter Notebook
  • Commits: 165
  • Committers: 2
  • Issues: 14
  • Pull Requests: 0
  • Owner: polca
  • Stars: 12
  • Forks: 1
  • Packages: 0
https://github.com/vocalpy/crowsetta

Crowsetta: A Python tool to work with any format for annotating animal vocalizations and bioacoustics data. - Published in JOSS (2023)
animal-communication animal-vocalizations annotation annotation-format bioacoustic-analysis bioacoustics birdsong csv dataset python python3
Added: 10 months ago - Last Synced: 10 months ago - Created: December 01, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 894
  • Committers: 3
  • Issues: 90
  • Pull Requests: 63
  • Owner: vocalpy
  • Stars: 58
  • Forks: 4
  • Packages: 2
  • Downloads: 1,082
https://github.com/cascella-group-uio/hymd

HylleraasMD: Massively parallel hybrid particle-field molecular dynamics in Python - Published in JOSS (2023)
chemistry coarse-grained hybrid-particle-field molecular-dynamics physics
Added: 10 months ago - Last Synced: 10 months ago - Created: March 05, 2021

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 950
  • Committers: 16
  • Issues: 56
  • Pull Requests: 52
https://github.com/schochastics/graphlayouts

graphlayouts: Layout algorithms for network visualizations in R - Published in JOSS (2023)
ggraph graph-algorithms network-analysis network-visualization r
Added: 10 months ago - Last Synced: 10 months ago - Created: September 12, 2018

  • Relevant topics? true
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: R
  • Commits: 273
  • Committers: 6
  • Issues: 78
  • Pull Requests: 21
  • Owner: schochastics
  • Stars: 281
  • Forks: 17
  • Packages: 3
  • Downloads: 74,096
https://github.com/prashjet/popkinmocks

popkinmocks: mock IFU datacubes for modelling stellar populations and kinematics - Published in JOSS (2023)
astronomy astrophysics datacube galaxy python spectroscopy stellar-kinematics stellar-populations
Added: 10 months ago - Last Synced: 10 months ago - Created: September 27, 2021

  • Relevant topics? false
  • External users? true
  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: Python
  • Commits: 86
  • Committers: 3
  • Issues: 34
  • Pull Requests: 54
  • Owner: prashjet
  • Stars: 5
  • Forks: 1
  • Packages: 0
https://github.com/jspsych/jspsych

jsPsych: Enabling an Open-Source Collaborative Ecosystem of Behavioral Experiments - Published in JOSS (2023)
experimental-design experiments javascript jspsych psychology psychology-experiments research science
Added: 10 months ago - Last Synced: 10 months ago - Created: May 15, 2012

  • Relevant topics? false
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  • Open source license? true
  • Active? true
  • Fork? false
  • Main Language: TypeScript
  • Commits: 3360
  • Committers: 115
  • Issues: 244
  • Pull Requests: 293
  • Owner: jspsych
  • Stars: 1137
  • Forks: 718
  • Packages: 63
  • Downloads: 80,786
https://github.com/nialov/fractopo

fractopo: A Python package for fracture network analysis - Published in JOSS (2023)
analysis fractopo fracture geology geometry python spatial-analysis topology
Added: 10 months ago - Last Synced: 10 months ago - Created: September 21, 2020

  • Relevant topics? true
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  • Open source license? true
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  • Fork? false
  • Main Language: Python
  • Commits: 1525
  • Committers: 4
  • Issues: 18
  • Pull Requests: 171
  • Owner: nialov
  • Stars: 26
  • Forks: 7
  • Packages: 2
  • Downloads: 117
https://github.com/tibordome/cosmic_profiles

CosmicProfiles: A Python package for radial profiling of finitely sampled dark matter halos and galaxies - Published in JOSS (2023)
astronomy cosmological-simulations point-cloud
Added: 10 months ago - Last Synced: 10 months ago - Created: March 29, 2022

  • Relevant topics? true
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  • Open source license? true
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  • Main Language: Cython
  • Commits: 331
  • Committers: 2
  • Issues: 2
  • Pull Requests: 7
  • Owner: tibordome
  • Stars: 4
  • Forks: 0
  • Packages: 2
  • Downloads: 116
https://github.com/wbk-robotics/pybullet_industrial

PyBullet Industrial: A process-aware robot simulation - Published in JOSS (2023)
industrial-automation robotics simulation-framework
Added: 10 months ago - Last Synced: 10 months ago - Created: May 11, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 521
  • Committers: 5
  • Issues: 32
  • Pull Requests: 30
https://github.com/edyvision/pii-codex

PII-Codex: a Python library for PII detection, categorization, and severity assessment - Published in JOSS (2023)
analysis data-analysis personal-identifiable-information pii pii-detection poetry presidio python python3 research research-software research-tool
Added: 10 months ago - Last Synced: 10 months ago - Created: September 07, 2022

  • Relevant topics? false
  • External users? true
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  • Fork? false
  • Main Language: Python
  • Commits: 49
  • Committers: 1
  • Issues: 6
  • Pull Requests: 34
  • Owner: EdyVision
  • Stars: 94
  • Forks: 11
  • Packages: 1
  • Downloads: 98
https://github.com/pyplati/platipy

PlatiPy: Processing Library and Analysis Toolkit for Medical Imaging in Python - Published in JOSS (2023)
image-analysis medical-imaging python registration segmentation visualization
Added: 10 months ago - Last Synced: 10 months ago - Created: September 22, 2020

  • Relevant topics? true
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  • Fork? false
  • Main Language: Python
  • Commits: 744
  • Committers: 12
  • Issues: 48
  • Pull Requests: 72
  • Owner: pyplati
  • Stars: 137
  • Forks: 29
  • Packages: 1
  • Downloads: 2,730
https://github.com/pyamg/pyamg

PyAMG: Algebraic Multigrid Solvers in Python - Published in JOSS (2023)
amg conda krylov multigrid pyamg python solver sparse-matrix
Added: 10 months ago - Last Synced: 10 months ago - Created: June 22, 2013

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  • Main Language: Python
  • Commits: 2283
  • Committers: 35
  • Issues: 74
  • Pull Requests: 117
  • Owner: pyamg
  • Stars: 626
  • Forks: 119
  • Packages: 5
  • Downloads: 94,298
https://github.com/taxprofiler/taxpasta

TAXPASTA: TAXonomic Profile Aggregation and STAndardisation - Published in JOSS (2023)
bioinformatics classification metagenomic-classification metagenomics profiling python standardisation taxonomic-classifications taxonomic-profiling
Added: 10 months ago - Last Synced: 10 months ago - Created: June 03, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 618
  • Committers: 5
  • Issues: 69
  • Pull Requests: 85
  • Owner: taxprofiler
  • Stars: 41
  • Forks: 7
  • Packages: 1
  • Downloads: 56
https://github.com/paulbrodersen/netgraph

Netgraph: Publication-quality Network Visualisations in Python - Published in JOSS (2023)
graph graph-tool igraph matplotlib network network-analysis network-science networkx publication-quality-plots python visualization
Added: 10 months ago - Last Synced: 10 months ago - Created: October 04, 2016

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 747
  • Committers: 10
  • Issues: 89
  • Pull Requests: 14
  • Owner: paulbrodersen
  • Stars: 733
  • Forks: 44
  • Packages: 1
  • Downloads: 9,030
https://github.com/ethicsai/ethical-smart-grid

Ethical Smart Grid: a Gym environment for learning ethical behaviours - Published in JOSS (2023)
ai-ethics artificial-intelligence gym-environment machine-ethics python reinforcement-learning smart-grid
Added: 10 months ago - Last Synced: 10 months ago - Created: September 13, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 188
  • Committers: 3
  • Issues: 3
  • Pull Requests: 7
  • Owner: ethicsai
  • Stars: 2
  • Forks: 0
  • Packages: 1
  • Downloads: 20
https://github.com/kanaverse/kana

Powering single-cell analyses in the browser with WebAssembly - Published in JOSS (2023)
bioinformatics cite-seq exploratory-data-analysis interactive-analysis interactive-visualizations rna-seq single-cell webassembly
Added: 10 months ago - Last Synced: 10 months ago - Created: December 02, 2021

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  • Main Language: JavaScript
  • Commits: 311
  • Committers: 4
  • Issues: 46
  • Pull Requests: 76
  • Owner: kanaverse
  • Stars: 152
  • Forks: 18
  • Packages: 0
https://github.com/bwheelz36/particlephasespace

ParticlePhaseSpace: A python package for streamlined import, analysis, and export of particle phase space data - Published in JOSS (2023)
accelerator-physics particles phase-space topas topas-mc twiss
Added: 10 months ago - Last Synced: 10 months ago - Created: December 15, 2022

  • Relevant topics? false
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  • Main Language: Jupyter Notebook
  • Commits: 222
  • Committers: 4
  • Issues: 74
  • Pull Requests: 76
  • Owner: bwheelz36
  • Stars: 14
  • Forks: 8
  • Packages: 0
https://github.com/sunpy/ndcube

ndcube: Manipulating N-dimensional Astronomical Data in Python - Published in JOSS (2023)
astropy nddata numfocus sunpy wcs
Added: 10 months ago - Last Synced: 10 months ago - Created: August 15, 2017

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 2548
  • Committers: 35
  • Issues: 106
  • Pull Requests: 421
  • Owner: sunpy
  • Stars: 48
  • Forks: 53
  • Packages: 2
  • Downloads: 72,314
https://github.com/jeremygelb/geocmeans

geocmeans: An R package for spatial fuzzy c-means - Published in JOSS (2023)
clustering cmeans fuzzy-classification-algorithms r spatial-analysis spatial-fuzzy-cmeans unsupervised-learning
Added: 10 months ago - Last Synced: 10 months ago - Created: March 21, 2020

  • Relevant topics? true
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  • Main Language: R
  • Commits: 173
  • Committers: 2
  • Issues: 8
  • Pull Requests: 0
  • Owner: JeremyGelb
  • Stars: 28
  • Forks: 2
  • Packages: 3
  • Downloads: 768
https://github.com/mrsonandrade/pyswarming

PySwarming: a research toolkit for Swarm Robotics - Published in JOSS (2023)
bioinspired engineering math mathematics multi-robot-systems pypi python python-toolkit research robot robotics self-organizing swarm swarm-intelligence swarm-robotics
Added: 10 months ago - Last Synced: 10 months ago - Created: September 09, 2022

  • Relevant topics? false
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  • Main Language: Python
  • Commits: 58
  • Committers: 2
  • Issues: 10
  • Pull Requests: 1
  • Owner: mrsonandrade
  • Stars: 29
  • Forks: 5
  • Packages: 1
  • Downloads: 37
https://github.com/tenemark/mikecalsetup

mikecalsetup: an open-source python tool for automatically creating calibration setups of MIKE SHE models in PEST or OSTRICH - Published in JOSS (2023)
calibration mikeshe ostrich pest python
Added: 10 months ago - Last Synced: 10 months ago - Created: November 01, 2022

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 54
  • Committers: 2
  • Issues: 10
  • Pull Requests: 4
  • Owner: tenemark
  • Stars: 3
  • Forks: 0
  • Packages: 0
https://github.com/damar-wicaksono/uqtestfuns

UQTestFuns: A Python3 library of uncertainty quantification (UQ) test functions - Published in JOSS (2023)
metamodeling python reliability-analysis sensitivity-analysis test-functions uncertainty-quantification
Added: 10 months ago - Last Synced: 10 months ago - Created: March 24, 2022

  • Relevant topics? false
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  • Main Language: Python
  • Commits: 377
  • Committers: 3
  • Issues: 182
  • Pull Requests: 153
https://github.com/amrex-combustion/pelelmex

PeleLMeX: an AMR Low Mach Number Reactive Flow Simulation Code without level sub-cycling - Published in JOSS (2023)
amrex combustion gpu-acceleration low-mach-number pele
Added: 10 months ago - Last Synced: 10 months ago - Created: March 05, 2021

  • Relevant topics? true
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  • Main Language: C++
  • Commits: 745
  • Committers: 21
  • Issues: 43
  • Pull Requests: 403
https://github.com/dieghernan/tidyterra

Using the tidyverse with terra objects: the tidyterra package - Published in JOSS (2023)
cran cran-r ggplot-extension r r-package r-spatial rspatial rstats rstats-package terra
Added: 10 months ago - Last Synced: 10 months ago - Created: May 03, 2022

  • Relevant topics? true
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  • Main Language: R
  • Commits: 456
  • Committers: 8
  • Issues: 74
  • Pull Requests: 114
  • Owner: dieghernan
  • Stars: 206
  • Forks: 11
  • Packages: 2
  • Downloads: 19,633
https://github.com/osemosys/otoole

otoole: OSeMOSYS Tools for Energy Work - Published in JOSS (2023)
energy energy-system energy-system-modelling osemosys
Added: 10 months ago - Last Synced: 10 months ago - Created: September 19, 2019

  • Relevant topics? true
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  • Main Language: Python
  • Commits: 622
  • Committers: 5
  • Issues: 86
  • Pull Requests: 79
  • Owner: OSeMOSYS
  • Stars: 28
  • Forks: 20
  • Packages: 1
  • Downloads: 1,012
https://github.com/akikuno/cstag

cstag and cstag-cli: tools for manipulating and visualizing cs tags - Published in JOSS (2024)
bioinformatics cstag minimap2 python sam sequence
Added: 10 months ago - Last Synced: 10 months ago - Created: March 12, 2022

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  • Main Language: Python
  • Commits: 248
  • Committers: 2
  • Issues: 12
  • Pull Requests: 16
  • Owner: akikuno
  • Stars: 10
  • Forks: 0
  • Packages: 1
  • Downloads: 1,379
https://github.com/jakelangham/kestrel

The Kestrel software for simulations of morphodynamic Earth-surface flows - Published in JOSS (2024)
debris-flow fluid-simulation geophysical-fluid-dynamics granular-flow morphodynamics natural-hazards-modelling shallow-water-equations
Added: 10 months ago - Last Synced: 10 months ago - Created: July 24, 2023

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  • Main Language: Fortran
  • Commits: 167
  • Committers: 7
  • Issues: 14
  • Pull Requests: 37
https://github.com/alejandrojuria/tightbinder

tightbinder: A Python package for semi-empirical tight-binding models of crystalline and disordered solids - Published in JOSS (2024)
alloys band-structure condensed-matter-physics dft-fit disorder electronic-structure physics python simulation slater-koster solid-state-physics tight-binding topology
Added: 10 months ago - Last Synced: 10 months ago - Created: May 26, 2020

  • Relevant topics? false
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  • Main Language: Python
  • Commits: 401
  • Committers: 4
  • Issues: 8
  • Pull Requests: 6
https://github.com/jbferet/prospect

prospect: an R package to link leaf optical properties with their chemical and structural properties with the leaf model PROSPECT - Published in JOSS (2024)
leaf leaf-traits physical-modeling prospect spectroscopy
Added: 10 months ago - Last Synced: 10 months ago - Created: August 24, 2020

  • Relevant topics? false
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  • Main Language: R
  • Commits: 192
  • Committers: 2
  • Issues: 11
  • Pull Requests: 1
  • Owner: jbferet
  • Stars: 19
  • Forks: 3
  • Packages: 0
https://github.com/idaholab/moose

The MOOSE Thermal Hydraulics Module - Published in JOSS (2024)
amr fem finite-elements finite-volumes multiphysics object-oriented parallel simulation
Added: 10 months ago - Last Synced: 10 months ago - Created: February 14, 2014

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  • Main Language: C++
  • Commits: 47857
  • Committers: 446
  • Issues: 1806
  • Pull Requests: 2827
  • Owner: idaholab
  • Stars: 2065
  • Forks: 1169
  • Packages: 1