Diversity.jl - v0.5.15

Diversity v0.5.15

Diff since v0.5.14

Merged pull requests:

• Bump julia-actions/setup-julia from 1 to 2 (#52) (@dependabot[bot])

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] 9 months ago

Diversity.jl - v0.5.14

Diversity v0.5.14

Diff since v0.5.13

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] 10 months ago

Diversity.jl - v0.5.13

Diversity v0.5.13

Diff since v0.5.12

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] 10 months ago

Diversity.jl - v0.5.12

Diversity v0.5.12

Diff since v0.5.11

Merged pull requests:

• Fix type issues in Phylo extension (#51) (@richardreeve)

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] about 1 year ago

Diversity.jl - v0.5.11

Diversity v0.5.11

Diff since v0.5.10

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] over 1 year ago

Diversity.jl - v0.5.10

Diversity v0.5.10

Diff since v0.5.9

Merged pull requests:

• Use extensions in Julia 1.9+ (#50) (@richardreeve)

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] over 1 year ago

Diversity.jl - v0.5.9

Diversity v0.5.9

Diff since v0.5.8

Merged pull requests:

• Introduce Gower (#49) (@richardreeve)

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] over 1 year ago

Diversity.jl - v0.5.8

Diversity v0.5.8

Diff since v0.5.7

Merged pull requests:

• Add Pielou's eveness, fix typo in documentation (#45) (@PeetoomHeida)
• Pielou (#47) (@richardreeve)

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] over 1 year ago

Diversity.jl - v0.5.7

Diversity v0.5.7

Diff since v0.5.6

Merged pull requests:

• Remove pre-julia 0.7 code (#41) (@richardreeve)
• Update testing code and workflow, dependencies (#48) (@richardreeve)

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] over 1 year ago

Diversity.jl - v0.5.6

Diversity v0.5.6

Diff since v0.5.5

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] about 4 years ago

Diversity.jl - v0.5.5

Diversity v0.5.5

Diff since v0.5.4

Merged pull requests:

• Diversity.Phylogenetics (#40) (@richardreeve)

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] about 4 years ago

Diversity.jl - v0.5.4

Diversity v0.5.4

Diff since v0.5.3

Merged pull requests:

• Updating workflows to use shells (#37) (@richardreeve)
• CompatHelper: bump compat for "DataFrames" to "1.0" (#38) (@github-actions[bot])
• CompatHelper: bump compat for "Missings" to "1.0" (#39) (@github-actions[bot])

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] about 4 years ago

Diversity.jl - v0.5.3

Diversity v0.5.3

Diff since v0.5.2

Closed issues:

• Ongoing issue to release new versions (#33)

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] about 4 years ago

Diversity.jl - v0.5.2

Diversity v0.5.2

Diff since v0.5.1

Merged pull requests:

• Actions workflow (#35) (@claireh93)

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by github-actions[bot] about 4 years ago

Diversity.jl - Fix dependencies

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve about 5 years ago

Diversity.jl - Update for compatibility with Phylo v0.4

• Drop Julia pre-v1.0 compatibility
• Move to Phylo v0.4.0 API

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve about 5 years ago

Diversity.jl - Update to EcoBase v0.0.6

New release for compatibility with updated EcoBase.

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve about 6 years ago

Diversity.jl - EcoJulia cross-compatibility

Full EcoJulia default implementation to allow cross-compatibility with other AbstractAssemblage-derived types. Moves EcoBase out of ext/ subfolder and uses released version directly. Resulting cross-compatibility allows diversity calculation of SpatialEcology Assemblage objects and plotting of Diversity Metacommunity objects.

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve over 6 years ago

Diversity.jl - Julia v1.0 compatibility and speed-up

Code now works with all of Julia v0.6, v0.7 and v1.0.
Also major speed up and reduction in memory use, and some preliminary code to adapt to EcoBase.

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve over 6 years ago

Diversity.jl - Minor fixes

• Now validates using Julia v0.6.3 against R package rdiversity v1.2
• More minor Julia v0.7 fixes

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve almost 7 years ago

Diversity.jl - Further 0.7 updates, fix PackageEvaluator.jl

• Fix iterator issues with Julia 0.7
• PackageEvaluator should no longer reject package tests

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve over 7 years ago

Diversity.jl - Updates to prepare for 0.7

• Remove Nullable and replace with Union{T, Missing} for 0.7
• Base.Test -> Compat.Test
• Fix R igraph test errors for 0.6
• Update RCall to 0.10.0 with Missing

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve over 7 years ago

Diversity.jl - Add in Phylogenetic diversity and move to Julia v0.6

A major update to the codebase:

• Add general API for adding in new types of diversity, and interface for users to access it
  • Provides phylogenetic diversity measures through Diversity.Phylogenetics submodule
• Now Julia v0.6 (and mostly nightly) compliant, drop support for Julia v0.5
• Provides iterators for species and subcommunities
• Removes deprecated syntax from Diversity v0.2.x

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve over 7 years ago

Diversity.jl - Release v0.3.1 - validate against R boydorr/rdiversity package

This package is now in beta - it successfully validates against the R package boydorr/rdiversity.

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve about 8 years ago

Diversity.jl - Update input and output formats and add 0.6 compatibility

• Update input format and deprecate old format
• Update output format to use DataFrames
• Remove deprecations for Julia v0.6 and drop v0.4

Biosphere - Biodiversity Analysis and Metrics - Julia
Published by richardreeve about 8 years ago