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AIBECS.jl

A Julia package that provides ocean biogeochemistry modelers with an easy-to-use interface for creating and running models of the ocean system.
https://github.com/juliaocean/aibecs.jl

Category: Hydrosphere
Sub Category: Ocean Carbon and Temperature

Keywords

awesome biogeochemical biogeochemical-model biogeochemistry fluxes global inverse-model julia marine marine-tracer model modeling models ocean ocean-circulation oceanography optimization pathways tracer transport

Keywords from Contributors

transform control energy-systems dynamics jacobians ocean-model simulations surrogate matrix-exponential pde

Last synced: about 8 hours ago
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Repository metadata

The ideal tool for exploring global marine biogeochemical cycles.

ReadMe.md

AIBECS.jl

The ideal tool for exploring global marine biogeochemical cycles.

AIBECS (for Algebraic Implicit Biogeochemical Elemental Cycling System, pronounced like the cool ibex) is a Julia package that provides ocean biogeochemistry modellers with an easy-to-use interface for creating and running models of the ocean system.

AIBECS is a system because it allows you to choose some biogeochemical tracers, define their interactions, select an ocean circulation and Voilà! — your model is ready to run.

Getting started

If you are new to AIBECS, head over to the documentation and look for the tutorials.
(You can also click on the big "Documentation" badge above.)

Concept

This package was developed to exploit linear-algebra tools and algorithms in Julia to efficiently simulate marine tracers.
AIBECS represents global biogeochemical cycles with a discretized system of nonlinear ordinary differential equations that takes the generic form

$$\frac{∂\boldsymbol{x}}{∂t} + \mathbf{T} \boldsymbol{x} = \boldsymbol{G}(\boldsymbol{x})$$

where $\boldsymbol{x}$ represents the model state variables, i.e., the marine tracer(s) concentration.
For a single tracer, $\boldsymbol{x}$ can be interpreted as the 3D field of its concentration.
In AIBECS, $\boldsymbol{x}$ is represented as a column vector (that's why it's bold and italic).

The operator $\mathbf{T}$ is a spatial differential operator that represents the transport of tracers.
For example, for a single tracer transported by ocean circulation,

$$\mathbf{T} = \nabla \cdot(\boldsymbol{u} - \mathbf{K}\nabla)$$

represents the effects of advection and eddy-diffusion
(where $\boldsymbol{u}$ is the 3D vector of the marine currents and $\mathbf{K}$ is a 3×3 eddy-diffusivity matrix).
Thus, $\mathbf{T}$ "acts" on $\boldsymbol{x}$ such that $\mathbf{T}\boldsymbol{x}$ is the flux divergence of that tracer.
In AIBECS, $\mathbf{T}$ is represented by a matrix (that's why it's bold and upstraight).

Lastly, the right-hand-side, $\boldsymbol{G}(\boldsymbol{x}$), represents the local sources minus sinks of each tracer, which must be provided as functions of the tracer(s) $\boldsymbol{x}$.

To simulate tracers using the AIBECS, you just need to define the transport operators $\mathbf{T}$ and the net sources and sinks $\boldsymbol{G}$.
That's pretty much the whole concept!

Note on maintenance and development

Note that AIBECS is essentially in maintenance-only mode, and might remain so for a little while.
Although it works (the software has been published and has been used in publications), I consider AIBECS still in development, with a bunch of features and fixes that are currently missing, but I do not have enough time to work on it unfortunately.
Please get in touch if you have some bandwidth and/or funding and are interested in collaborating or developing AIBECS!

Citation

This code is © Benoît Pasquier (2026) and contributors, and it is made available under the MIT license enclosed with the software.

Over and above the legal restrictions imposed by this license, if you use this software for an academic publication then you are obliged to provide proper attribution. This can be to this code directly,

Benoît Pasquier, François W. Primeau, and Seth G. John (2026). AIBECS.jl: A tool for exploring global marine biogeochemical cycles. Zenodo. doi: 10.5281/zenodo.2864051.

or to the paper that describes it,

Pasquier, B., Primeau, F. W., and John, S. G. (2022). AIBECS.jl: A tool for exploring global marine biogeochemical cycles. Journal of Open Source Software, 7(69), 3814. doi: 10.21105/joss.03814.

but, ideally, both. You can also find the citation(s) in BibTeX format in the CITATION.bib file.

If you use data provided by this package (like the ocean circulation from the OCIM), please cite them as well.

Also, if you want to do research using the AIBECS, and you think I could help, do not hesitate to contact me directly (contacts on my website), I would be happy to contribute and collaborate!

The authors acknowledge funding from the Department of Energy grant DE-SC0016539 and from the National Science Foundation grant 1658380.

Citation (CITATION.bib)

             _____   ____    ______    _____    _____
     /\     |_   _| |  _ \  |  ____|  / ____|  / ____|
    /  \      | |   | |_) | | |__    | |      | (___
   / /\ \     | |   |  _ <  |  __|   | |       \___ \
  / ____ \   _| |_  | |_) | | |____  | |____   ____) |
 /_/    \_\ |_____| |____/  |______|  \_____| |_____/

Main citations: AIBECS software
@misc{AIBECS.jl,
    author = {Pasquier, Benoît and Primeau, François W. and John, Seth G.},
    title = {{{AIBECS}}.Jl: {{A}} Tool for Exploring Global Marine Biogeochemical Cycles.},
    year = 2024,
    doi = {10.5281/zenodo.2864051.},
}
AIBECS JOSS paper
@article{Pasquier_etal_JOSS_2022,
    title = {{{AIBECS}}.Jl: {{A}} Tool for Exploring Global Marine Biogeochemical Cycles.},
    author = {Pasquier, Benoît and Primeau, François W. and John, Seth G.},
    year = {2022},
    journal = {Journal of Open Source Software},
    volume = {7},
    number = {69},
    pages = {3814},
    publisher = {The Open Journal},
    doi = {10.21105/joss.03814}
}

----------------------------------------------------------------------------------



   _____   _____   _____     _____   _    _   _                   _______   _____    ____    _   _    _____
  / ____| |_   _| |  __ \   / ____| | |  | | | |          /\     |__   __| |_   _|  / __ \  | \ | |  / ____|
 | |        | |   | |__) | | |      | |  | | | |         /  \       | |      | |   | |  | | |  \| | | (___
 | |        | |   |  _  /  | |      | |  | | | |        / /\ \      | |      | |   | |  | | | . ` |  \___ \
 | |____   _| |_  | | \ \  | |____  | |__| | | |____   / ____ \     | |     _| |_  | |__| | | |\  |  ____) |
  \_____| |_____| |_|  \_\  \_____|  \____/  |______| /_/    \_\    |_|    |_____|  \____/  |_| \_| |_____/

OCIM0
@article{Primeau_etal_2013,
    AUTHOR = "F. W. Primeau and M. Holzer and T. DeVries",
    TITLE = {{S}outhern {O}cean nutrient trapping and the efficiency of the biological pump},
    JOURNAL = {Journal of Geophysical Research},
    VOLUME = "118",
    doi = "10.1002/jgrc.20181",
    PAGES = "2547-2564",
    YEAR = "2013"
}

OCIM1
@article{DeVries_2014,
    author = {DeVries, Tim},
    title = {The oceanic anthropogenic {CO}\textsubscript{2} sink: Storage, air-sea fluxes, and transports over the industrial era},
    journal = {Global Biogeochemical Cycles},
    volume = {28},
    number = {7},
    issn = {1944-9224},
    doi = {10.1002/2013GB004739},
    pages = {631--647},
    year = {2014},
}
@article{DeVries_Primeau_2011,
    TITLE="Dynamically and Observationally Constrained Estimates of Water-Mass Distributions and Ages in the Global Ocean",
    AUTHOR = "DeVries, Tim and Primeau, Fran\c{c}ois",
    JOURNAL = "Journal of Physical Oceanography",
    YEAR = "2011",
    pages = "2381--2401",
    VOLUME = "41",
    doi = "10.1175/JPO-D-10-05011.1",
}

Archer_etal_2000 3-box model
@article{Archer_etal_2000,
    author = {Archer, David E. and Eshel, Gidon and Winguth, Arne and Broecker, Wallace and Pierrehumbert, Ray and Tobis, Michael and Jacob, Robert},
    title = {Atmospheric pCO\textsupscript{2} sensitivity to the biological pump in the ocean},
    journal = {Global Biogeochemical Cycles},
    volume = {14},
    number = {4},
    pages = {1219--1230},
    doi = {10.1029/1999GB001216},
    year = {2000}
}

TwoBoxModel
@book{Sarmiento_Gruber_2006,
    author = "J. L. Sarmiento and N. Gruber",
    title = "Ocean Biogeochemical Dynamics",
    pages = "503",
    publisher = "Princeton Univ. Press, Princeton and Oxford",
    year = "2006",
}

OCIM2
@article{DeVries_Holzer_2019,
    author = {DeVries, Tim and Holzer, Mark},
    title = {Radiocarbon and Helium Isotope Constraints on Deep Ocean Ventilation and Mantle-\textsuperscript{3}{He} Sources},
    journal = {Journal of Geophysical Research: Oceans},
    volume = {124},
    number = {5},
    pages = {3036--3057},
    doi = {10.1029/2018JC014716},
    year = {2019}
}

OCIM2_48L
@article{Holzer_etal_2021,
    author = {Holzer, Mark and DeVries, Tim and {de Lavergne}, Casimir},
    year = {2021},
    journal = {Nature Communications},
    volume = {12},
    number = {1},
    pages = {4348},
    issn = {2041-1723},
    doi = {10.1038/s41467-021-24648-x}
}

POP
Coming soon!

MITgcm / OCCA
@article{Forget_2010,
    author = {Forget, Ga\"{e}l},
    title = {Mapping Ocean Observations in a Dynamical Framework: A 2004--06 Ocean Atlas},
    journal = {Journal of Physical Oceanography},
    volume = {40},
    number = {6},
    pages = {1201--1221},
    year = {2010},
    doi = {10.1175/2009JPO4043.1}
}

Haine et al. 9-box model
@article{Haine_Hall_JPhysOcn_2002,
  title = {A {{Generalized Transport Theory}}: {{Water-Mass Composition}} and {{Age}}},
  author = {Haine, Thomas W. N. and Hall, Timothy M.},
  year = 2002,
  journal = {Journal of Physical Oceanography},
  volume = {32},
  number = {6},
  pages = {1932--1946},
  publisher = {American Meteorological Society},
  issn = {0022-3670, 1520-0485},
  doi = {10.1175/1520-0485(2002)032<1932:AGTTWM>2.0.CO;2},
  abstract = {A general theory to describe and understand advective and diffusive ocean transport is reported. It allows any passive tracer field with an atmospheric source to be constructed by superposing sea surface contributions with a generalized Green's function called the boundary propagator of the passive tracer equation. The boundary propagator has the interpretation of the joint water-mass and transit-time distribution from the sea surface. The theory thus includes the classical oceanographic idea of water-mass analysis and extends it to allow for a distribution of transit times from the sea surface. The joint water-mass and transit-time distribution contains complete information about the transport processes in the flow. It captures this information in a more accessible way than using velocity and diffusivity fields, however, at least for the case of sequestration and transport of dissolved material by the ocean circulation. The boundary propagator is thus the natural quantity to consider when discussing both steady-state and transient ocean tracers, including the inverse problem of interpreting tracer data in terms of ocean circulation. Two constraints on the shape of the transit-time distributions are derived. First, the asymptotic behavior for a steady, or time-averaged, circulation is exponential decay. Second, integrated over the whole ocean, the transit-time distribution from the sea surface cannot increase. The theory is illustrated using a one-dimensional advection–diffusion model, a box model, and a North Atlantic general circulation model.},
}
@article{Haine_etal_JAMES_2025,
  title = {A {{Review}} of {{Green}}'s {{Function Methods}} for {{Tracer Timescales}} and {{Pathways}} in {{Ocean Models}}},
  author = {Haine, Thomas W. N. and Griffies, Stephen M. and Gebbie, Geoffrey and Jiang, Wenrui},
  year = 2025,
  journal = {Journal of Advances in Modeling Earth Systems},
  volume = {17},
  number = {7},
  pages = {e2024MS004637},
  issn = {1942-2466},
  doi = {10.1029/2024MS004637},
  abstract = {Understanding advective-diffusive dispersal of trace substances in environmental fluids like the global ocean is a ubiquitous challenge in geophysics. Since the turn of the millennium, substantial progress has been made in the theory, implementation in models, and application of such tracers in oceanography. For the first time, this progress is reviewed here in a synthetic way. We focus on tracer techniques in ocean models, including real and virtual tracers that diagnose timescale information, and we emphasize the connection to the Green's function that solves the advection-diffusion equation. Implementation of these techniques in ocean models is explained in an accessible way. We present example applications of these techniques to questions concerning ocean circulation, transport of biogeochemicals, and paleoceanography, including future opportunities.}
}
@software{gebbie_2024_14533209,
  author       = {Gebbie, Geoffrey and Haine, Thomas W. N. and Griffies, Stephen M. and Jiang, Wenrui and Pasquier, Benoît},
  title        = {OceanGreensFunctionMethods.jl: Julia software package with pedagogical box model},
  year         = 2024,
  publisher    = {Zenodo},
  version      = {v1.0},
  doi          = {10.5281/zenodo.14533209},
  url          = {https://doi.org/10.5281/zenodo.14533209},
}

----------------------------------------------------------------------------------



             ______   _____     ____     _____    ____    _         _____
     /\     |  ____| |  __ \   / __ \   / ____|  / __ \  | |       / ____|
    /  \    | |__    | |__) | | |  | | | (___   | |  | | | |      | (___
   / /\ \   |  __|   |  _  /  | |  | |  \___ \  | |  | | | |       \___ \
  / ____ \  | |____  | | \ \  | |__| |  ____) | | |__| | | |____   ____) |
 /_/    \_\ |______| |_|  \_\  \____/  |_____/   \____/  |______| |_____/

# Chien et al
@article{Chien_etal_2016,
    author = {Chien, Chia-Te and Mackey, Katherine R. M. and Dutkiewicz, Stephanie and Mahowald, Natalie M. and Prospero, Joseph M. and Paytan, Adina},
    title = {Effects of {A}frican dust deposition on phytoplankton in the western tropical {A}tlantic {O}cean off {B}arbados},
    journal = {Global Biogeochemical Cycles},
    volume = {30},
    number = {5},
    pages = {716--734},
    keywords = {atmospheric deposition, Barbados, phytoplankton community structure, nutrient limitation},
    doi = {10.1002/2015GB005334},
    year = {2016}
}

# Kok et al
@article{Kok_etal_2021b,
    author = {Kok, J. F. and Adebiyi, A. A. and Albani, S. and Balkanski, Y. and Checa-Garcia, R. and Chin, M. and Colarco, P. R. and Hamilton, D. S. and Huang, Y. and Ito, A. and Klose, M. and Li, L. and Mahowald, N. M. and Miller, R. L. and Obiso, V. and P\'erez Garc\'{\i}a-Pando, C. and Rocha-Lima, A. and Wan, J. S.},
    title = {Contribution of the world's main dust source regions to the global cycle of desert dust},
    journal = {Atmospheric Chemistry and Physics},
    volume = {21},
    year = {2021},
    number = {10},
    pages = {8169--8193},
    doi = {10.5194/acp-21-8169-2021}
}
@article{Adebiyi_etal_2020,
    author = {Adebiyi, A. A. and Kok, J. F. and Wang, Y. and Ito, A. and Ridley, D. A. and Nabat, P. and Zhao, C.},
    title = {Dust Constraints from joint Observational-Modelling-experiMental analysis
    (dustcoMM): comparison with measurements and model simulations},
    journal = {Atmospheric Chemistry and Physics},
    volume = {20},
    year = {2020},
    number = {2},
    pages = {829--863},
    doi = {10.5194/acp-20-829-2020}
}
@article{Kok_etal_2021a,
    author = {Kok, J. F. and Adebiyi, A. A. and Albani, S. and Balkanski, Y. and Checa-Garcia, R. and Chin, M. and Colarco, P. R. and Hamilton, D. S. and Huang, Y. and Ito, A. and Klose, M. and Leung, D. M. and Li, L. and Mahowald, N. M. and Miller, R. L. and Obiso, V. and P\'erez Garc\'{\i}a-Pando, C. and Rocha-Lima, A. and Wan, J. S. and Whicker, C. A.},
    title = {Improved representation of the global dust cycle using observational constraints on dust properties and abundance},
    journal = {Atmospheric Chemistry and Physics},
    volume = {21},
    year = {2021},
    number = {10},
    pages = {8127--8167},
    doi = {10.5194/acp-21-8127-2021}
}
@article{Scanza_etal_2018,
    author = {Scanza, R. A. and Hamilton, D. S. and Perez Garcia-Pando, C. and Buck, C. and Baker, A. and Mahowald, N. M.},
    title = {Atmospheric processing of iron in mineral and combustion aerosols:
    development of an intermediate-complexity mechanism suitable for Earth
    system models},
    journal = {Atmospheric Chemistry and Physics},
    volume = {18},
    year = {2018},
    number = {19},
    pages = {14175--14196},
    doi = {10.5194/acp-18-14175-2018}
}

----------------------------------------------------------------------------------



  _______    ____    _____     ____     _____   _____               _____    _    _  __     __
 |__   __|  / __ \  |  __ \   / __ \   / ____| |  __ \      /\     |  __ \  | |  | | \ \   / /
    | |    | |  | | | |__) | | |  | | | |  __  | |__) |    /  \    | |__) | | |__| |  \ \_/ /
    | |    | |  | | |  ___/  | |  | | | | |_ | |  _  /    / /\ \   |  ___/  |  __  |   \   /
    | |    | |__| | | |      | |__| | | |__| | | | \ \   / ____ \  | |      | |  | |    | |
    |_|     \____/  |_|       \____/   \_____| |_|  \_\ /_/    \_\ |_|      |_|  |_|    |_|

@article{Amante_Eakins_2009,
    title = {{ETOPO1} 1 arc-minute global relief model: procedures, data sources and analysis},
    author = {Amante, Christopher and Eakins, Barry W},
    year = {2009},
    journal = {NOAA Technical Memorandum NESDIS NGDC-24},
    publisher ={National Geophysical Data Center, NOAA},
    doi = {10.7289/V5C8276M}
}

----------------------------------------------------------------------------------



  _____  _______      ________ _____   _____
 |  __ \|_   _\ \    / /  ____|  __ \ / ____|
 | |__) | | |  \ \  / /| |__  | |__) | (___
 |  _  /  | |   \ \/ / |  __| |  _  / \___ \
 | | \ \ _| |_   \  /  | |____| | \ \ ____) |
 |_|  \_\_____|   \/   |______|_|  \_\_____/

Dataset
@misc{Dai_2017,
    author = "Aiguo {Dai}",
    title = "Dai and Trenberth Global River Flow and Continental Discharge Dataset",
    publisher  = "Research Data Archive at the National Center for Atmospheric Research, Computational and Information Systems Laboratory",
    address = {Boulder CO},
    year  = "2017",
    doi = "10.5065/D6V69H1T"
}

Formal publication that describe the dataset
@article{Dai_Trenberth_2002,
    author = {Dai, Aiguo and Trenberth, Kevin E.},
    title = "{Estimates of Freshwater Discharge from Continents: Latitudinal and Seasonal Variations}",
    journal = {Journal of Hydrometeorology},
    volume = {3},
    number = {6},
    pages = {660--687},
    year = {2002},
    month = {12},
    issn = {1525--755X},
    doi = {10.1175/1525-7541(2002)003<0660:EOFDFC>2.0.CO;2}
}

Descriptions of updates to the dataset
@article{Dai_etal_2009,
    author = {Dai, Aiguo and Qian, Taotao and Trenberth, Kevin E. and Milliman, John D.},
    title = "{Changes in Continental Freshwater Discharge from 1948 to 2004}",
    journal = {Journal of Climate},
    volume = {22},
    number = {10},
    pages = {2773--2792},
    year = {2009},
    month = {05},
    issn = {0894--8755},
    doi = {10.1175/2008JCLI2592.1},
}
@inbook{Dai_2016,
    author = {Dai, Aiguo},
    publisher = {American Geophysical Union (AGU)},
    isbn = {9781118971772},
    title = {Historical and Future Changes in Streamflow and Continental Runoff},
    booktitle = {Terrestrial Water Cycle and Climate Change},
    chapter = {2},
    pages = {17--37},
    doi = {10.1002/9781118971772.ch2},
    year = {2016},
}

----------------------------------------------------------------------------------



   _____ _____   ____  _    _ _   _ _______          __  _______ ______ _____
  / ____|  __ \ / __ \| |  | | \ | |  __ \ \        / /\|__   __|  ____|  __ \
 | |  __| |__) | |  | | |  | |  \| | |  | \ \  /\  / /  \  | |  | |__  | |__) |
 | | |_ |  _  /| |  | | |  | | . ` | |  | |\ \/  \/ / /\ \ | |  |  __| |  _  /
 | |__| | | \ \| |__| | |__| | |\  | |__| | \  /\  / ____ \| |  | |____| | \ \
  \_____|_|  \_\\____/ \____/|_| \_|_____/   \/  \/_/    \_\_|  |______|_|  \_\

Paper
@article{Luijendijk_etal_2020,
    doi = {10.1038/s41467-020-15064-8},
    year = {2020},
    publisher = {Springer Science and Business Media {LLC}},
    volume = {11},
    number = {1},
    author = {Elco Luijendijk and Tom Gleeson and Nils Moosdorf},
    title = {Fresh groundwater discharge insignificant for the world's oceans but important for coastal ecosystems},
    journal = {Nature Communications}
}

Dataset
@misc{luijendijk_etal_2019,
    author={Elco {Luijendijk} and Tom {Gleeson} and Nils {Moosdorf}},
    title={{Geospatial data and model results for a global model study of coastal groundwater discharge}},
    year={2019},
    doi={10.1594/PANGAEA.907641},
    note={Supplement to: Luijendijk, E et al. (2019): The Flow of Fresh Groundwater and Solutes to the World{\textquotesingle}s Oceans and Coastal Ecosystems. EarthArXiv Preprints, https://doi.org/10.31223/osf.io/sw8r4}
    type={data set},
    publisher={PANGAEA}
}

----------------------------------------------------------------------------------



  _____    _    _   ____   _       _____    _____      _      _______   _____    ____    _   _    _____
 |  __ \  | |  | | |  _ \ | |     |_   _|  / ____|    / \    |__   __| |_   _|  / __ \  | \ | |  / ____|
 | |__) | | |  | | | |_) || |       | |   | |        / _ \      | |      | |   | |  | | |  \| | | (___
 |  ___/  | |  | | |  _ < | |       | |   | |       / ___ \     | |      | |   | |  | | | . ` |  \___ \
 | |      | |__| | | |_) || |____  _| |_  | |____  / /   \ \    | |     _| |_  | |__| | | |\  |  ____) |
 |_|       \____/  |____/ |______||_____|  \_____|/_/     \_\   |_|    |_____|  \____/  |_| \_| |_____/

Papers and software that use AIBECS. See docs/src/publications/1_publications.md
for the rendered list. Sorted newest-first.

@article{Wise_etal_GRL_2026,
    title = {Differing {{Controls}} on the {{Cycling}} of {{Neodymium}} in the {{Atlantic}} and the {{Pacific}}},
    author = {Wise, Paige M. and Pasquier, Beno{\^i}t and John, Seth G. and Hines, Sophia K. V.},
    year = {2026},
    month = mar,
    journal = {Geophysical Research Letters},
    volume = {53},
    number = {6},
    pages = {e2025GL117334},
    doi = {10.1029/2025GL117334},
    issn = {1944-8007}
}

@article{Du_etal_Nature_2025,
    title = {Abyssal seafloor as a key driver of ocean trace-metal biogeochemical cycles},
    author = {Du, Jianghui and Haley, Brian A. and McManus, James and Blaser, Patrick and Rickli, J{\"o}rg and Vance, Derek},
    year = {2025},
    journal = {Nature},
    volume = {642},
    number = {8068},
    pages = {620--627},
    doi = {10.1038/s41586-025-09038-3},
    issn = {1476-4687}
}

@article{Liang_etal_GBC_2025,
    title = {Oligotrophic Ocean New Production Supported by Lateral Transport of Dissolved Organic Nutrients},
    author = {Liang, Zhou and Letscher, Robert T. and Knapp, Angela N.},
    year = {2025},
    journal = {Global Biogeochemical Cycles},
    volume = {39},
    number = {6},
    doi = {10.1029/2024GB008345},
    issn = {1944-9224}
}

@article{John_etal_GBC_2024,
    title = {Biogeochemical Fluxes of Nickel in the Global Oceans Inferred From a Diagnostic Model},
    author = {John, Seth G. and Liang, Hengdi and Pasquier, Beno{\^i}t and Holzer, Mark and Silva, Sam},
    year = {2024},
    journal = {Global Biogeochemical Cycles},
    volume = {38},
    number = {5},
    doi = {10.1029/2023GB008018},
    issn = {1944-9224}
}

@article{Du_GMD_2023,
    title = {{SedTrace} 1.0: a {Julia}-based framework for generating and running reactive-transport models of marine sediment diagenesis specializing in trace elements and isotopes},
    author = {Du, Jianghui},
    year = {2023},
    journal = {Geoscientific Model Development},
    volume = {16},
    number = {20},
    pages = {5865--5894},
    doi = {10.5194/gmd-16-5865-2023},
    issn = {1991-9603}
}

@article{Pasquier_etal_GMD_2022,
    title = {{GNOM} v1.0: an optimized steady-state model of the modern marine neodymium cycle},
    author = {Pasquier, Beno{\^i}t and Hines, Sophia K. V. and Liang, Hengdi and Wu, Yingzhe and Goldstein, Steven L. and John, Seth G.},
    year = {2022},
    journal = {Geoscientific Model Development},
    volume = {15},
    number = {11},
    pages = {4625--4656},
    doi = {10.5194/gmd-15-4625-2022},
    issn = {1991-9603}
}

@misc{GNOM_software,
    title = {{GNOM}: An optimized steady-state model of the modern global marine neodymium cycle},
    author = {Pasquier, Beno{\^i}t and Hines, Sophia K. V. and Liang, Hengdi and Wu, Yingzhe and Goldstein, Steven L. and John, Seth G.},
    year = {2023},
    publisher = {Zenodo},
    doi = {10.5281/zenodo.5651295}
}

----------------------------------------------------------------------------------



  _____             _              _____
 |  __ \           | |            |  __ \
 | |  | |   __ _   | |_    __ _   | |  | |   ___   _ __     ___
 | |  | |  / _` |  | __|  / _` |  | |  | |  / _ \ | '_ \   / __|
 | |__| | | (_| |  | |_  | (_| |  | |__| | |  __/ | |_) |  \__ \
 |_____/   \__,_|   \__|  \__,_| |_____/   \___| | .__/   |___/
                                                  | |
                                                  |_|

DataDeps.jl powers all on-demand dataset downloads in AIBECS (OCIM matrices, ETOPO, AeolianSources, ...). See docs/src/reference/datasets.md for the catalog.
@article{White_etal_JournalofOpenResearchSoftware_2019,
  title = {{{DataDeps}}.Jl: {{Repeatable Data Setup}} for {{Reproducible Data Science}}},
  shorttitle = {{{DataDeps}}.Jl},
  author = {White, Lyndon and Togneri, Roberto and Liu, Wei and Bennamoun, Mohammed},
  date = {2019-10-29T11:26:50+00:00},
  journaltitle = {Journal of Open Research Software},
  shortjournal = {J. Open Res. Softw.},
  volume = {7},
  number = {1},
  issn = {2049-9647},
  doi = {10.5334/jors.244},
}

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juliahub.com: AIBECS

The ideal tool for exploring global marine biogeochemical cycles.

  • Homepage:
  • Status: removed
  • Documentation: https://docs.juliahub.com/General/AIBECS/stable/
  • Licenses: MIT
  • Latest release: 0.13.3 (published almost 2 years ago)
  • Last Synced: 2024-10-29T21:11:48.930Z (over 1 year ago)
  • Versions: 99
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Downloads: 2 Total
  • Rankings:
    • Dependent repos count: 9.94%
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    • Forks count: 21.666%
    • Average: 21.77%
    • Dependent packages count: 38.915%

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