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Open Sustainable Technology

A curated list of open technology projects to sustain a stable climate, energy supply, biodiversity and natural resources.

biodivMapR

An R package for α- and β-diversity mapping using remotely-sensed images.
https://github.com/jbferet/biodivmapr

Category: Biosphere
Sub Category: Biodiversity Analysis and Metrics

Keywords

biodiversity diversity-mapping hyperspectral-imaging remote-sensing sentinel-2 tropical-forest

Keywords from Contributors

radiative-transfer-models preprocessing

Last synced: about 18 hours ago
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Repository metadata

biodivMapR: an R package for α- and β-diversity mapping using remotely-sensed images

README.md

biodivMapR

An R package for α- and β-diversity mapping using remotely-sensed images

build
licence
version
version

1 Install

The package remotes first needs to be installed from the CRAN

install.packages("remotes")

Then some packages which were removed from the CRAN may need to be installed directly from authors' repository. This is the case for dissUtils:

remotes::install_github('cran/dissUtils')

After installing remotesand dissUtils, biodivMapR should be ready for installation with the following command line in your R session:

remotes::install_github('jbferet/biodivMapR')

2 Tutorial

A tutorial vignette is available here.

The corresponding script is available in file examples/tutorial.R.

3 Citation

If you use biodivMapR, please cite the following references:

Féret, J.-B., de Boissieu, F., 2019. biodivMapR: an R package for α‐ and β‐diversity mapping using remotely‐sensed images. Methods Ecol. Evol. 00:1-7. https://doi.org/10.1111/2041-210X.13310

Féret, J.-B., Asner, G.P., 2014. Mapping tropical forest canopy diversity using high-fidelity imaging spectroscopy. Ecol. Appl. 24, 1289–1296. https://doi.org/10.1890/13-1824.1

4 Acknowledgments / Fundings

This research was supported by the Agence Nationale de la Recherche (ANR, France) through the young researchers project BioCop (ANR-17-CE32-0001)

Owner metadata

GitHub Events

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Committers metadata

Last synced: 7 days ago

Total Commits: 335
Total Committers: 5
Avg Commits per committer: 67.0
Development Distribution Score (DDS): 0.313

Commits in past year: 48
Committers in past year: 2
Avg Commits per committer in past year: 24.0
Development Distribution Score (DDS) in past year: 0.125

Name Email Commits
Jean-Baptiste Feret j****t@t****r 230
floriandeboissieu f****s@g****m 94
Florian de Boissieu f****u@i****r 7
jean-baptiste.feret j****t@i****r 3
Björn Grüning b****n@g****u 1

Committer domains:

Issue and Pull Request metadata

Last synced: 2 days ago

Total issues: 37
Total pull requests: 9
Average time to close issues: 27 days
Average time to close pull requests: about 1 month
Total issue authors: 26
Total pull request authors: 4
Average comments per issue: 2.35
Average comments per pull request: 0.11
Merged pull request: 6
Bot issues: 0
Bot pull requests: 0

Past year issues: 11
Past year pull requests: 3
Past year average time to close issues: 18 days
Past year average time to close pull requests: 2 days
Past year issue authors: 6
Past year pull request authors: 1
Past year average comments per issue: 1.91
Past year average comments per pull request: 0.33
Past year merged pull request: 3
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/jbferet/biodivmapr

Top Issue Authors

  • jofeggg (4)
  • LucasXin1 (4)
  • rrsc1234 (2)
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  • npuletti (2)
  • andreitapch (1)
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Top Pull Request Authors

  • floriandeboissieu (5)
  • rnedelec (2)
  • bgruening (1)
  • tangrong1 (1)

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Package metadata

conda-forge.org: r-biodivmapr

  • Homepage: https://jbferet.github.io/biodivMapR/
  • Licenses: GPL-3.0-only
  • Latest release: 1.9.8 (published over 2 years ago)
  • Last Synced: 2025-04-25T13:04:20.482Z (2 days ago)
  • Versions: 2
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Dependent repos count: 34.025%
    • Forks count: 40.923%
    • Average: 42.456%
    • Stargazers count: 43.699%
    • Dependent packages count: 51.175%

Dependencies

DESCRIPTION cran
  • R.utils * imports
  • data.table * imports
  • dissUtils * imports
  • ecodist * imports
  • emstreeR * imports
  • fields * imports
  • future * imports
  • future.apply * imports
  • geometry * imports
  • labdsv * imports
  • matlab * imports
  • matrixStats * imports
  • methods * imports
  • mmand * imports
  • raster * imports
  • rgdal * imports
  • rgeos * imports
  • sf * imports
  • snow * imports
  • sp * imports
  • stars * imports
  • stringr * imports
  • tools * imports
  • vegan * imports
  • zip * imports
  • knitr * suggests
  • rmarkdown * suggests
  • testthat >= 2.0.0 suggests
.github/workflows/tic.yml actions
  • actions/checkout v2.3.4 composite
  • actions/upload-artifact v2.2.1 composite
  • pat-s/always-upload-cache v2.1.3 composite
  • r-lib/actions/setup-pandoc v2 composite
  • r-lib/actions/setup-r v2 composite
  • r-lib/actions/setup-tinytex v2 composite

Score: -Infinity