MICM Chemistry - Version 3.8.0

What's Changed

• Add sparse matrix option with Compressed Sparse Column ordering by @mattldawson in https://github.com/NCAR/micm/pull/693
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/699
• Filter zeros in solver results by @mattldawson in https://github.com/NCAR/micm/pull/700
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/701
• Add in-place LU decomposition option for linear solve by @mattldawson in https://github.com/NCAR/micm/pull/698
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/702
• Add in-place LU decomposition with Doolittle algorithm by @mattldawson in https://github.com/NCAR/micm/pull/705
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/706
• Remove solver_.parameters_ by @montythind in https://github.com/NCAR/micm/pull/668
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/708
• Matrix print by @mattldawson in https://github.com/NCAR/micm/pull/711
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/712
• Happy New Year by @boulderdaze in https://github.com/NCAR/micm/pull/709
• Improve the CPU performance by increasing the iterator directly by @sjsprecious in https://github.com/NCAR/micm/pull/710
• Fix bug in inline BE solver by @mattldawson in https://github.com/NCAR/micm/pull/714
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/715
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/716
• Fix substepping issue for Rosenbrock solver with inline LU decomposition by @sjsprecious in https://github.com/NCAR/micm/pull/717
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/718
• Remove code of conduct by @mattldawson in https://github.com/NCAR/micm/pull/719
• Fix bug in parser by @mattldawson in https://github.com/NCAR/micm/pull/723
• Reorder Jacobian calculation by @mattldawson in https://github.com/NCAR/micm/pull/707
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/725
• moving diagonal elements to state by @K20shores in https://github.com/NCAR/micm/pull/724
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/726
• removed references to json things by @K20shores in https://github.com/NCAR/micm/pull/727
• Add a workflow to close stale issue/PR by @sjsprecious in https://github.com/NCAR/micm/pull/729
• adding state default constructor test by @K20shores in https://github.com/NCAR/micm/pull/734
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/735
• correcting more state constructors, adding tests by @K20shores in https://github.com/NCAR/micm/pull/737
• Phase names by @K20shores in https://github.com/NCAR/micm/pull/738
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/740
• Add types to solver class by @mattldawson in https://github.com/NCAR/micm/pull/736
• removing the config reader by @K20shores in https://github.com/NCAR/micm/pull/739
• 733 update micm documentation to only use open atmos types by @K20shores in https://github.com/NCAR/micm/pull/741
• Add restrict keyword for local raw pointers in ProcessSet by @sjsprecious in https://github.com/NCAR/micm/pull/745
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/746
• 678 test to ensure readme is up to date by @K20shores in https://github.com/NCAR/micm/pull/747
• bumping version for release by @K20shores in https://github.com/NCAR/micm/pull/749
• bumping version for release (#749) by @K20shores in https://github.com/NCAR/micm/pull/750

Full Changelog: https://github.com/NCAR/micm/compare/v.3.7.0...v3.8.0

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by K20shores 3 months ago

MICM Chemistry - Version 3.7.0

What's Changed

• Remove singular check for LU decomposition and add const qualifier to the CUDA kernels by @sjsprecious in https://github.com/NCAR/micm/pull/671
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/672
• Copyable state by @K20shores in https://github.com/NCAR/micm/pull/673
• 662 more strict tolerance for unitintegration tests by @K20shores in https://github.com/NCAR/micm/pull/670
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/674
• Fix readme example by @mattldawson in https://github.com/NCAR/micm/pull/677
• Set hstart to timestep by @K20shores in https://github.com/NCAR/micm/pull/679
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/680
• Change LU decomposition class to be Doolittle-specific by @sjsprecious in https://github.com/NCAR/micm/pull/683
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/684
• Fixes a bug in the logic used to calculate alpha - jacobian by @mattldawson in https://github.com/NCAR/micm/pull/691
• Add MOZART LU decomposition scheme by @mattldawson in https://github.com/NCAR/micm/pull/690
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/692
• Update version by @boulderdaze in https://github.com/NCAR/micm/pull/696

Full Changelog: https://github.com/NCAR/micm/compare/v3.6.0...v.3.7.0

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by boulderdaze 6 months ago

MICM Chemistry - Version 3.6.0

What's Changed

• v3.6.0 by @K20shores in https://github.com/NCAR/micm/pull/669

Full Changelog: https://github.com/NCAR/micm/compare/v3.5.0...v3.6.0

What's Changed

• Add CUDA Rosenbrock tests by @sjsprecious in https://github.com/NCAR/micm/pull/579
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/586
• Use Fill to reset the L and U matrices in Rosenbrock solve by @mattldawson in https://github.com/NCAR/micm/pull/588
• In-place linear solve by @K20shores in https://github.com/NCAR/micm/pull/585
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/589
• 498 mimic camchem substep convergence failure integration acceptance by @K20shores in https://github.com/NCAR/micm/pull/582
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/590
• 304 reorganize include folder by @K20shores in https://github.com/NCAR/micm/pull/591
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/592
• 577 test all parameter types of the dense matrix cpu rosenbrock on the analytical policy tests by @K20shores in https://github.com/NCAR/micm/pull/593
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/597
• Fix GPU memory leak for the CUDA unit tests by @sjsprecious in https://github.com/NCAR/micm/pull/600
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/601
• Backware Euler with vectorizable matrix types by @mattldawson in https://github.com/NCAR/micm/pull/596
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/605
• 572 check for singularity when the solver parameters flag is turned on by @K20shores in https://github.com/NCAR/micm/pull/603
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/606
• Provide a way to access the processes_ data member by @sjsprecious in https://github.com/NCAR/micm/pull/607
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/608
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/609
• Add missing CUDA tests and fix broken path by @sjsprecious in https://github.com/NCAR/micm/pull/611
• throwing error on mismatched size by @K20shores in https://github.com/NCAR/micm/pull/610
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/612
• Correct usage of third body species by @K20shores in https://github.com/NCAR/micm/pull/614
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/615
• correcting solver builder constructor by @K20shores in https://github.com/NCAR/micm/pull/616
• Relax the criteria to pass the GPU test with nvhpc/24.7 on Derecho by @sjsprecious in https://github.com/NCAR/micm/pull/618
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/623
• Update fill function for CUDA matrix by @sjsprecious in https://github.com/NCAR/micm/pull/626
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/627
• Remove data transfer in cuda matrix constructor and template some CUDA functions by @sjsprecious in https://github.com/NCAR/micm/pull/630
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/633
• Remove redundant variable and optimize the copy assignment for the CUDA matrix by @sjsprecious in https://github.com/NCAR/micm/pull/636
• Remove local copy of state in solver functions by @mattldawson in https://github.com/NCAR/micm/pull/639
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/640
• Add CUDA stream for asynchronous kernel launch by @sjsprecious in https://github.com/NCAR/micm/pull/641
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/645
• Remove the local copy of Jacobian matrix when doing LU decomposition by @sjsprecious in https://github.com/NCAR/micm/pull/646
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/647
• Add const to solver functions by @mattldawson in https://github.com/NCAR/micm/pull/642
• Replace json to yaml 619 by @montythind in https://github.com/NCAR/micm/pull/649
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/650
• Add const qualifiers by @mattldawson in https://github.com/NCAR/micm/pull/651
• Move Yerror construction outside of the inner solve loop for rosenbrock by @montythind in https://github.com/NCAR/micm/pull/652
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/653
• Move temporary variables to the State class by @sjsprecious in https://github.com/NCAR/micm/pull/655
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/656
• Use CUDA Rosenbrock parameters by @sjsprecious in https://github.com/NCAR/micm/pull/659
• Added license and copyright by @montythind in https://github.com/NCAR/micm/pull/661
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/660
• Misc updates by @sjsprecious in https://github.com/NCAR/micm/pull/665
• Set LU matrices to zero when jacobian is a zero element by @K20shores in https://github.com/NCAR/micm/pull/666
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/667

New Contributors

• @montythind made their first contribution in https://github.com/NCAR/micm/pull/649

Full Changelog: https://github.com/NCAR/micm/compare/v3.5.0...v3.6.0

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by K20shores 9 months ago

MICM Chemistry - v3.5.0

What's Changed

• Override NormalizedError function with CUDA by @sjsprecious in https://github.com/NCAR/micm/pull/424
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/435
• 393 create cudasparsematrix class by @mwaxmonsky in https://github.com/NCAR/micm/pull/426
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/437
• Optimize data movement for CudaRosenbrocksolver and compute minus Jacobian matrix on GPU by @sjsprecious in https://github.com/NCAR/micm/pull/436
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/438
• Update the CUDA implementation of AddforcingTerms with the CudaVectorMatrix class by @sjsprecious in https://github.com/NCAR/micm/pull/439
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/441
• Allow custom rate parameters to be directly set by @K20shores in https://github.com/NCAR/micm/pull/440
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/444
• Rename CUDA matrix class to be Dense or Sparse by @sjsprecious in https://github.com/NCAR/micm/pull/443
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/445
• Update the CUDA implementation of SubtractJacobianTerms with the CUDA matrix class by @sjsprecious in https://github.com/NCAR/micm/pull/446
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/447
• add support for non-double properties by @mattldawson in https://github.com/NCAR/micm/pull/448
• Initial attempt to format cuda code. by @mwaxmonsky in https://github.com/NCAR/micm/pull/449
• Fixing bugs in previous PR. by @mwaxmonsky in https://github.com/NCAR/micm/pull/450
• Update template arguments for LuDecomposition by @mattldawson in https://github.com/NCAR/micm/pull/454
• Add exceptions for species property lookups by @mattldawson in https://github.com/NCAR/micm/pull/455
• Update the CUDA implementation of AlphaMinusJacobian and NormalizedError with the CUDA matrix class by @sjsprecious in https://github.com/NCAR/micm/pull/452
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/460
• adding a test to show that integrated reaction rates can be collected by @K20shores in https://github.com/NCAR/micm/pull/459
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/462
• 456 read and use relative tolerance absolute tolerance by @K20shores in https://github.com/NCAR/micm/pull/457
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/463
• Profiling and Optimization for VectorMatrix by @boulderdaze in https://github.com/NCAR/micm/pull/429
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/465
• Update the CUDA implementation of CudaLuDecomposition with the CUDA matrix class by @sjsprecious in https://github.com/NCAR/micm/pull/464
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/467
• Vectorized NormalizedError by @K20shores in https://github.com/NCAR/micm/pull/461
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/469
• Updates to error handling by @mattldawson in https://github.com/NCAR/micm/pull/468
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/470
• make error code functions inline by @mattldawson in https://github.com/NCAR/micm/pull/477
• Apply rules to order Include headers by @boulderdaze in https://github.com/NCAR/micm/pull/476
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/478
• Fix regex in clang-format by @boulderdaze in https://github.com/NCAR/micm/pull/479
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/481
• Check if the device pointer is initialized to nullptr in the move constructor by @sjsprecious in https://github.com/NCAR/micm/pull/484
• Update the CUDA implementation of CudaLinearSolver with the CUDA matrix class by @sjsprecious in https://github.com/NCAR/micm/pull/474
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/486
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/487
• Explicitly call the function from the base class in a CUDA class by @sjsprecious in https://github.com/NCAR/micm/pull/483
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/491
• 400 backward euler solver option by @K20shores in https://github.com/NCAR/micm/pull/485
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/497
• Fix the profiler driver by @boulderdaze in https://github.com/NCAR/micm/pull/493
• Update the assign function inside both CPU and GPU class by @sjsprecious in https://github.com/NCAR/micm/pull/495
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/502
• Re-evaluate clang tidy by @mwaxmonsky in https://github.com/NCAR/micm/pull/501
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/503
• Rename functions to consistently use CamelCase by @boulderdaze in https://github.com/NCAR/micm/pull/489
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/504
• Fix the broken main by @boulderdaze in https://github.com/NCAR/micm/pull/506
• Configure clang-tidy to uniformise the style in naming classes, class data members and variables by @boulderdaze in https://github.com/NCAR/micm/pull/511
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/515
• Update the tutorial to reflect the changes in the names and the style by @boulderdaze in https://github.com/NCAR/micm/pull/513
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/517
• 518 integrate clang tidy workflow with config file by @mwaxmonsky in https://github.com/NCAR/micm/pull/519
• 520 clang tidy cert additions by @mwaxmonsky in https://github.com/NCAR/micm/pull/525
• Clang-tidy Readability Checks by @boulderdaze in https://github.com/NCAR/micm/pull/526
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/528
• CamelCase for getting version by @boulderdaze in https://github.com/NCAR/micm/pull/530
• 514 create a builder class that can make a backward euler solver by @K20shores in https://github.com/NCAR/micm/pull/527
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/531
• Add new issues to project board by @mattldawson in https://github.com/NCAR/micm/pull/533
• Remove issue action by @mattldawson in https://github.com/NCAR/micm/pull/537
• actions run on workflow dispatch or pr by @K20shores in https://github.com/NCAR/micm/pull/532
• Disable Intel tests by @mattldawson in https://github.com/NCAR/micm/pull/542
• enabling intel by @K20shores in https://github.com/NCAR/micm/pull/545
• Add GPU memory check for CUDA code by @sjsprecious in https://github.com/NCAR/micm/pull/544
• 546 update cmakeliststxt to support latest cuda project type and architectures by @mwaxmonsky in https://github.com/NCAR/micm/pull/547
• Add exiting error code for compute-sanitizer by @sjsprecious in https://github.com/NCAR/micm/pull/553
• Add error checks for all the CUDA APIs by @sjsprecious in https://github.com/NCAR/micm/pull/554
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/555
• removing irrelevant cmake tests by @K20shores in https://github.com/NCAR/micm/pull/556
• Add option for creating a third-body species in the MICM configuration by @boulderdaze in https://github.com/NCAR/micm/pull/551
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/558
• Use single line comment style for copyright by @boulderdaze in https://github.com/NCAR/micm/pull/561
• Apply solver builder to Rosenbrock by @mattldawson in https://github.com/NCAR/micm/pull/560
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/562
• Modify regex in clang format by @boulderdaze in https://github.com/NCAR/micm/pull/559
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/565
• Run tests on commits to main by @mattldawson in https://github.com/NCAR/micm/pull/566
• Share CUBLAS handle between different CUBLAS matrices by @sjsprecious in https://github.com/NCAR/micm/pull/543
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/570
• Removing 2019 msvc github actions by @K20shores in https://github.com/NCAR/micm/pull/574
• Inline version by @K20shores in https://github.com/NCAR/micm/pull/569
• run all actions even if one strategy fails in a matrix by @K20shores in https://github.com/NCAR/micm/pull/571
• using header file instead of including cpp file by @K20shores in https://github.com/NCAR/micm/pull/573
• testing backward euler with most of the analytical tests by @K20shores in https://github.com/NCAR/micm/pull/576
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/580
• read version in the docs from the cmake files by @K20shores in https://github.com/NCAR/micm/pull/581
• renaming chapman mechanism and adding readme by @K20shores in https://github.com/NCAR/micm/pull/583
• Update the version to v3.5.0 by @boulderdaze in https://github.com/NCAR/micm/pull/584

Full Changelog: https://github.com/NCAR/micm/compare/v.3.4.0...v3.5.0

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by boulderdaze about 1 year ago

MICM Chemistry - Version 3.5.0 release candidate

What's Changed

• Override NormalizedError function with CUDA by @sjsprecious in https://github.com/NCAR/micm/pull/424
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/435
• 393 create cudasparsematrix class by @mwaxmonsky in https://github.com/NCAR/micm/pull/426
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/437
• Optimize data movement for CudaRosenbrocksolver and compute minus Jacobian matrix on GPU by @sjsprecious in https://github.com/NCAR/micm/pull/436
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/438
• Update the CUDA implementation of AddforcingTerms with the CudaVectorMatrix class by @sjsprecious in https://github.com/NCAR/micm/pull/439
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/441
• Allow custom rate parameters to be directly set by @K20shores in https://github.com/NCAR/micm/pull/440
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/444
• Rename CUDA matrix class to be Dense or Sparse by @sjsprecious in https://github.com/NCAR/micm/pull/443
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/445
• Update the CUDA implementation of SubtractJacobianTerms with the CUDA matrix class by @sjsprecious in https://github.com/NCAR/micm/pull/446
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/447
• add support for non-double properties by @mattldawson in https://github.com/NCAR/micm/pull/448
• Initial attempt to format cuda code. by @mwaxmonsky in https://github.com/NCAR/micm/pull/449
• Fixing bugs in previous PR. by @mwaxmonsky in https://github.com/NCAR/micm/pull/450
• Update template arguments for LuDecomposition by @mattldawson in https://github.com/NCAR/micm/pull/454

Full Changelog: https://github.com/NCAR/micm/compare/v.3.4.0...v3.5.0-release-candidate

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by K20shores about 1 year ago

MICM Chemistry - v.3.4.0

What's Changed

• Create constructor/destructor for CudaLuDecomposition class to handle data movement between host and device by @sjsprecious in https://github.com/NCAR/micm/pull/399
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/402
• Create constructor/destructor for CudaProcessSet class to handle data movement between host and device by @sjsprecious in https://github.com/NCAR/micm/pull/403
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/404
• Create constructor/destructor for CudaLinearSolver class to handle data movement between host and device by @sjsprecious in https://github.com/NCAR/micm/pull/405
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/406
• Initial CudaVectorMatrix implementation. by @mwaxmonsky in https://github.com/NCAR/micm/pull/408
• reseting matrices by @K20shores in https://github.com/NCAR/micm/pull/410
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/411
• Adding missing constructor implementaion. by @mwaxmonsky in https://github.com/NCAR/micm/pull/418
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/419
• 416 add assignment overridescopy constructors to cudavectormatrix so new matrix has separate device memory by @mwaxmonsky in https://github.com/NCAR/micm/pull/420
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/421
• Add cublasDaxpy routine to perform foreach-like calculation on the GPU by @sjsprecious in https://github.com/NCAR/micm/pull/422
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/423
• prefixing all options with micm_ by @K20shores in https://github.com/NCAR/micm/pull/413
• Actions by @K20shores in https://github.com/NCAR/micm/pull/427
• Citation by @K20shores in https://github.com/NCAR/micm/pull/430
• Release v3.4.0 by @boulderdaze in https://github.com/NCAR/micm/pull/433

New Contributors

• @sjsprecious made their first contribution in https://github.com/NCAR/micm/pull/399
• @mwaxmonsky made their first contribution in https://github.com/NCAR/micm/pull/408

Full Changelog: https://github.com/NCAR/micm/compare/v.3.3.1...v.3.4.0

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by boulderdaze over 1 year ago

MICM Chemistry - v3.3.1

What's Changed

• Adding missing inline by @boulderdaze in https://github.com/NCAR/micm/pull/397
• v3.3.1 Release by @boulderdaze in https://github.com/NCAR/micm/pull/398

Full Changelog: https://github.com/NCAR/micm/compare/v.3.3.0...v.3.3.1

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by boulderdaze over 1 year ago

MICM Chemistry - v3.3.0

What's Changed

• README updates by @mattldawson in https://github.com/NCAR/micm/pull/252
• 242 add tutorial for rate constant types except custom ones by @K20shores in https://github.com/NCAR/micm/pull/251
• Config parser by @dwfncar in https://github.com/NCAR/micm/pull/255
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/262
• adding timing functions by @K20shores in https://github.com/NCAR/micm/pull/265
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/266
• 260 add tutorial for multiple grid cells by @K20shores in https://github.com/NCAR/micm/pull/263
• 253 add tutorial for custom rate constants by @K20shores in https://github.com/NCAR/micm/pull/254
• Develop windows tutorial by @mattldawson in https://github.com/NCAR/micm/pull/267
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/274
• Update README.md by @K20shores in https://github.com/NCAR/micm/pull/275
• 278 add tutorial for use with openmp by @K20shores in https://github.com/NCAR/micm/pull/280
• only create the formatting branch if changes are detected by @K20shores in https://github.com/NCAR/micm/pull/282
• 157 steal the tests from the json library to test xcode builds by @K20shores in https://github.com/NCAR/micm/pull/283
• 264 add tutorial on timing the solver and investigating solver statistics by @K20shores in https://github.com/NCAR/micm/pull/270
• Decompose cuda by @qinatan in https://github.com/NCAR/micm/pull/257
• 271 add tutorial on configuring the solver for with different parameters by @K20shores in https://github.com/NCAR/micm/pull/277
• adding time to hello world example by @K20shores in https://github.com/NCAR/micm/pull/281
• adding code of conduct and contributors guide by @K20shores in https://github.com/NCAR/micm/pull/284
• hopefully copying the switcher by @K20shores in https://github.com/NCAR/micm/pull/285
• Enable openmp by @K20shores in https://github.com/NCAR/micm/pull/286
• JitRosenbrockSolver integration and regression tests by @mattldawson in https://github.com/NCAR/micm/pull/287
• removing documentation dependencies from readme by @K20shores in https://github.com/NCAR/micm/pull/288
• putting docker files into their own folder by @K20shores in https://github.com/NCAR/micm/pull/289
• Switcher again by @K20shores in https://github.com/NCAR/micm/pull/291
• 292 add a docker image publish by @K20shores in https://github.com/NCAR/micm/pull/294
• Fix set concentrations mapping error by @mattldawson in https://github.com/NCAR/micm/pull/297
• Test kpp micm by @dwfncar in https://github.com/NCAR/micm/pull/295
• adding micm optional dependency pictures by @K20shores in https://github.com/NCAR/micm/pull/311
• Actions by @K20shores in https://github.com/NCAR/micm/pull/307
• update README example with time output by @mattldawson in https://github.com/NCAR/micm/pull/312
• update README by @mattldawson in https://github.com/NCAR/micm/pull/313
• adding icon to readme and favicon to docs by @K20shores in https://github.com/NCAR/micm/pull/298
• Update README.md by @K20shores in https://github.com/NCAR/micm/pull/316
• Develop 245 terminator by @mattldawson in https://github.com/NCAR/micm/pull/314
• 299 install micm and use in a new project by @K20shores in https://github.com/NCAR/micm/pull/306
• Validation checks by @K20shores in https://github.com/NCAR/micm/pull/318
• Bug fix build by @mattldawson in https://github.com/NCAR/micm/pull/319
• Develop 82 singular matrix by @mattldawson in https://github.com/NCAR/micm/pull/321
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/323
• 164 prevent non standard keys in json by @K20shores in https://github.com/NCAR/micm/pull/317
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/328
• 279 make solve function for ode solvers thread safe by @K20shores in https://github.com/NCAR/micm/pull/322
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/334
• 256 config parser by @dwfncar in https://github.com/NCAR/micm/pull/325
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/335
• 309 add tutorial for jit solver by @K20shores in https://github.com/NCAR/micm/pull/332
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/336
• Allow multiple JIT functions with the same name by @mattldawson in https://github.com/NCAR/micm/pull/341
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/342
• Develop jit tutorial edits by @mattldawson in https://github.com/NCAR/micm/pull/343
• adding jit process set in openmp example by @K20shores in https://github.com/NCAR/micm/pull/344
• update line numbers in JIT tutorial by @mattldawson in https://github.com/NCAR/micm/pull/345
• Develop 272 ts1 by @K20shores in https://github.com/NCAR/micm/pull/340
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/346
• Check for unused species in solver constructor by @mattldawson in https://github.com/NCAR/micm/pull/347
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/348
• Parse scaling factors by @mattldawson in https://github.com/NCAR/micm/pull/351
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/353
• Changed rate constant expression to allow for N = 0. by @dwfncar in https://github.com/NCAR/micm/pull/354
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/355
• 350 rm kpp to micm by @dwfncar in https://github.com/NCAR/micm/pull/357
• Develop 337 non si units by @mattldawson in https://github.com/NCAR/micm/pull/359
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/360
• Changed reactions.json units to non-SI. by @dwfncar in https://github.com/NCAR/micm/pull/361
• 310 add tutorial for the vectorized matrix solver by @K20shores in https://github.com/NCAR/micm/pull/362
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/364
• 153 config parser by @dwfncar in https://github.com/NCAR/micm/pull/369
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/370
• Cuda solver by @qinatan in https://github.com/NCAR/micm/pull/358
• 182 surface reaction example by @dwfncar in https://github.com/NCAR/micm/pull/356
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/371
• Command-line driver for MICM by @boulderdaze in https://github.com/NCAR/micm/pull/326
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/372
• Update Boltzmann constant by @mattldawson in https://github.com/NCAR/micm/pull/375
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/376
• Update CMakeLists.txt by @mattldawson in https://github.com/NCAR/micm/pull/377
• 374 tutorial for each example in the examples folder by @K20shores in https://github.com/NCAR/micm/pull/378
• using the new state in the tutorials, correcting line numbers, doxyge… by @K20shores in https://github.com/NCAR/micm/pull/379
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/380
• trying a different filter by @K20shores in https://github.com/NCAR/micm/pull/382
• Develop 374 examples by @mattldawson in https://github.com/NCAR/micm/pull/381
• Cuda alpha by @qinatan in https://github.com/NCAR/micm/pull/384
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/385
• Happy new year! by @boulderdaze in https://github.com/NCAR/micm/pull/386
• v3.3.0 Release by @boulderdaze in https://github.com/NCAR/micm/pull/396

Full Changelog: https://github.com/NCAR/micm/compare/v3.2.0...v.3.3.0

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by boulderdaze over 1 year ago

MICM Chemistry - v3.2.0

What's Changed

• Enable openacc by @K20shores in https://github.com/NCAR/micm/pull/91
• creating a separate cuda and openacc target by @K20shores in https://github.com/NCAR/micm/pull/92
• Redefinition issue by @K20shores in https://github.com/NCAR/micm/pull/102
• Vectorizable Sparse Matrix by @mattldawson in https://github.com/NCAR/micm/pull/105
• Remove RosenbrockSolver inheritence from ChapmanODESolver by @mattldawson in https://github.com/NCAR/micm/pull/109
• Add sparse matrix policy to RosenbrockSolver class by @mattldawson in https://github.com/NCAR/micm/pull/111
• Googletest version by @K20shores in https://github.com/NCAR/micm/pull/108
• Linear solver by @mattldawson in https://github.com/NCAR/micm/pull/114
• Add build instructions to the readme by @aharonYK in https://github.com/NCAR/micm/pull/100
• Finish AlphaMinusJacobian function by @mattldawson in https://github.com/NCAR/micm/pull/117
• Merge main flipped by @mattldawson in https://github.com/NCAR/micm/pull/115
• Multiplatform build by @K20shores in https://github.com/NCAR/micm/pull/120
• General Rosenbrock Solver by @mattldawson in https://github.com/NCAR/micm/pull/121
• Map params by @boulderdaze in https://github.com/NCAR/micm/pull/104
• add CudaProcessSet class by @mattldawson in https://github.com/NCAR/micm/pull/124
• Move hard-coded Chapman solver to tests by @mattldawson in https://github.com/NCAR/micm/pull/125
• Update parser by @boulderdaze in https://github.com/NCAR/micm/pull/119
• Merge Solver class into RosenbrockSolver by @mattldawson in https://github.com/NCAR/micm/pull/132
• CUDA AddForcingTerms function by @qinatan in https://github.com/NCAR/micm/pull/118
• using c++ compiler... by @K20shores in https://github.com/NCAR/micm/pull/133
• ran the formatter by @K20shores in https://github.com/NCAR/micm/pull/134
• Example in README by @mattldawson in https://github.com/NCAR/micm/pull/135
• Address compiler warnings by @mattldawson in https://github.com/NCAR/micm/pull/139
• Add relative tolerance to regression tests by @mattldawson in https://github.com/NCAR/micm/pull/140
• 126 unify error handling by @K20shores in https://github.com/NCAR/micm/pull/137
• State reordering by @mattldawson in https://github.com/NCAR/micm/pull/143
• trying to run formatting automatically by @K20shores in https://github.com/NCAR/micm/pull/146
• Getting started docs by @dwfncar in https://github.com/NCAR/micm/pull/152
• Ternary chemical activation rate constant by @mattldawson in https://github.com/NCAR/micm/pull/155
• Tunneling reaction rate constant by @mattldawson in https://github.com/NCAR/micm/pull/156
• trying to separate parameters by @K20shores in https://github.com/NCAR/micm/pull/151
• Branched NO + RO2 reaction by @mattldawson in https://github.com/NCAR/micm/pull/160
• updating docs to use new stage selector thing by @K20shores in https://github.com/NCAR/micm/pull/159
• trying to create a PR after push to main by @K20shores in https://github.com/NCAR/micm/pull/161
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/162
• Emission, loss rate constants by @mattldawson in https://github.com/NCAR/micm/pull/166
• making it compile for performance repo by @K20shores in https://github.com/NCAR/micm/pull/168
• Surface reaction rate constant by @mattldawson in https://github.com/NCAR/micm/pull/169
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/170
• KPP to MICM by @dwfncar in https://github.com/NCAR/micm/pull/173
• Add LLVM support for JIT compiling by @mattldawson in https://github.com/NCAR/micm/pull/174
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/181
• JITed forcing function by @mattldawson in https://github.com/NCAR/micm/pull/179
• 158 add integration tests for simple chemistry systems by @K20shores in https://github.com/NCAR/micm/pull/180
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/187
• Add jacobian terms cuda by @qinatan in https://github.com/NCAR/micm/pull/188
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/192
• Kpp to micm by @dwfncar in https://github.com/NCAR/micm/pull/191
• Debug main by @qinatan in https://github.com/NCAR/micm/pull/198
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/199
• Parameter fixes by @K20shores in https://github.com/NCAR/micm/pull/197
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/201
• Develop jit jacobian function by @mattldawson in https://github.com/NCAR/micm/pull/202
• Param by @qinatan in https://github.com/NCAR/micm/pull/205
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/210
• Develop 204 jit lu by @mattldawson in https://github.com/NCAR/micm/pull/212
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/213
• Add inline files by @boulderdaze in https://github.com/NCAR/micm/pull/206
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/214
• 208 add jited alphaminusjacobian function by @K20shores in https://github.com/NCAR/micm/pull/215
• put the solver state out of the rosenbrock class to remove need to sp… by @K20shores in https://github.com/NCAR/micm/pull/216
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/220
• Robertson by @K20shores in https://github.com/NCAR/micm/pull/221
• fix solver test by @mattldawson in https://github.com/NCAR/micm/pull/223
• Develop 207 jit linear solve by @mattldawson in https://github.com/NCAR/micm/pull/224
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/225
• fix missing namespace in linear solver test by @mattldawson in https://github.com/NCAR/micm/pull/227
• Oregonator by @K20shores in https://github.com/NCAR/micm/pull/222
• 228 hires by @K20shores in https://github.com/NCAR/micm/pull/229
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/235
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/237
• 230 e5 by @K20shores in https://github.com/NCAR/micm/pull/231
• lowering computed rate constant by @K20shores in https://github.com/NCAR/micm/pull/233
• 236 set up micm documentation builds and gh pages by @K20shores in https://github.com/NCAR/micm/pull/240
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/241
• Develop 193 jit rate constants by @mattldawson in https://github.com/NCAR/micm/pull/247
• Auto-format code changes by @github-actions in https://github.com/NCAR/micm/pull/248
• Add inline keywords by @boulderdaze in https://github.com/NCAR/micm/pull/249
• Release version 3.2.0 by @K20shores in https://github.com/NCAR/micm/pull/239

New Contributors

• @aharonYK made their first contribution in https://github.com/NCAR/micm/pull/100
• @qinatan made their first contribution in https://github.com/NCAR/micm/pull/118
• @dwfncar made their first contribution in https://github.com/NCAR/micm/pull/152
• @github-actions made their first contribution in https://github.com/NCAR/micm/pull/162

Full Changelog: https://github.com/NCAR/micm/compare/v3.1.0...v3.2.0

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by boulderdaze almost 2 years ago

MICM Chemistry - Version 3.1.0

What's Changed

• Music box 2 by @mattldawson in https://github.com/NCAR/micm/pull/1
• Develop 2 rate constants by @mattldawson in https://github.com/NCAR/micm/pull/3
• add preprocessor functions by @mattldawson in https://github.com/NCAR/micm/pull/4
• update for domain refactor by @mattldawson in https://github.com/NCAR/micm/pull/5
• Develop 46 camp by @mattldawson in https://github.com/NCAR/micm/pull/6
• Develop 3 json format by @mattldawson in https://github.com/NCAR/micm/pull/9
• Develop 252 evolving conditions by @mattldawson in https://github.com/NCAR/micm/pull/10
• 18 hard coded chapman solver by @K20shores in https://github.com/NCAR/micm/pull/56
• Develop rosenbrock solver actually by @K20shores in https://github.com/NCAR/micm/pull/57
• public const data members by @boulderdaze in https://github.com/NCAR/micm/pull/67
• General Rosenbrock rate constants by @mattldawson in https://github.com/NCAR/micm/pull/68
• 59 Setup MICM for MUSICA by @K20shores in https://github.com/NCAR/micm/pull/71
• Multi-grid-cell state data by @mattldawson in https://github.com/NCAR/micm/pull/72
• Add forcing function to general Rosenbrock solver by @mattldawson in https://github.com/NCAR/micm/pull/74
• Cmake fixes by @K20shores in https://github.com/NCAR/micm/pull/76
• Sparse matrix class by @mattldawson in https://github.com/NCAR/micm/pull/77
• Rosenbrock dforce_dy function by @mattldawson in https://github.com/NCAR/micm/pull/78
• relax tolerance in Rosenbrock p_force regression test by @mattldawson in https://github.com/NCAR/micm/pull/79
• 80 micm cannot compile with nvhpc230 by @K20shores in https://github.com/NCAR/micm/pull/81
• 83 add hpc testing framework by @K20shores in https://github.com/NCAR/micm/pull/84
• fixing cmake variable name by @K20shores in https://github.com/NCAR/micm/pull/90
• Json parsing by @boulderdaze in https://github.com/NCAR/micm/pull/89
• Vectorizable matrix class by @mattldawson in https://github.com/NCAR/micm/pull/87
• LU decomposition by @mattldawson in https://github.com/NCAR/micm/pull/93
• add template parameter to Rosenbrock Solver test by @mattldawson in https://github.com/NCAR/micm/pull/97
• updating version number by @K20shores in https://github.com/NCAR/micm/pull/101

New Contributors

• @boulderdaze made their first contribution in https://github.com/NCAR/micm/pull/67

Full Changelog: https://github.com/NCAR/micm/compare/v00.001...v3.1.0

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by K20shores almost 2 years ago

MICM Chemistry -

Atmosphere - Atmospheric Chemistry and Aerosol - C++
Published by K20shores about 2 years ago