BIRDS - preparing a CRAN submission

Test environment

• local Windows 10, R version 4.1.0
• remote r-hub check_for_cran()
• remote Github Actions Windows, Mac, and Ubuntu 20.04 LTS, R version 4.1.2 and R devel

R CMD check results

There where no ERRORs or WARNINGs on local builds after R CMD check
There was one NOTE on remote builds "Note: found 18 marked UTF-8 strings".
This note corresponds to 'sf' objects provided as data for the examples and vignettes to run. After being in contact with the sf package developers, I found no way to avoid this note as it is not clear where in the object these characters are. I kindly ask for an exception on this note.

Note:

We now use find.package() as suggested instead of installed.packages()

The function that can be run in parallel has an argument 'parallel' set to FALSE as default to prevent using more than 1 core in examples, vignettes, etc.

Downstream dependencies

There are currently no downstream dependencies for this package in CRAN

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 3 years ago

BIRDS - migration to sf

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete almost 4 years ago

BIRDS - preparing a new submission

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete almost 4 years ago

BIRDS - release 0.1.4

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete almost 4 years ago

BIRDS - fix transform

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete almost 4 years ago

BIRDS - CRAN submition

fixed notes and message on load

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete about 4 years ago

BIRDS - release for CRAN submition

fixed package dependencies

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete about 4 years ago

BIRDS - dev release

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - release with remotes dggrid

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - fix unique spill over

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - fixing for shinyBirds

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - minor addition to latest

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - stable release before CRAN submission

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - consistent xts in temporal exportBIRDS

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - consistent xts in temporal exportBIRDS

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - fixing interaction with SBDI4R and ALA4R

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - release for CRAN submition

in this release:
Note:

• during the coming releases compatibility issues with rgdal and sp may occur. We advice to update those packages and the libraries GDAL and PROJ.

Bug fixes:

• removeObs() got stuck in infinite loops under certain circumstances. #10
• zoo::index() Sometimes when reloading summarise birds it trows the following error when I run focalSpReport #7
• includeUniqueSpillover() would crash if the grid polygon had an associated data.frame (spatialPolygonDataFrame). #8
• exploreVisits() error when timeInVisits != "day" #11
• CRS issue in organizeBirds(x=data, grid=grid) #9 This issue was related to #17 for which we have made a great deal of changes to prepare for the imminent release of the new versions of rgdal and sp packages.
• simplifySpp() would return "Falco" for cases like "Falco peregrinus, 1771". We now implemented the package taxsize to improve this function. #16

New functions:

• we now offer more options to prepare community matices with functions communityMatrix(), CommunityMatrixGrid() and RecbySpec() to we used in community analyses and completeness functions from other packages. #24
• the function exploreVisits() gains the output variable "nclusters" and nos uses the function DBSCAN::DBSCAN() to calculate clusters and outliers within each visit. #19 #18
• focalSpp() reports are now more efficient and fast. #25
• sppreports() now gained the argument overlay to add overlay layers in the reports

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 4 years ago

BIRDS - dev release

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete almost 5 years ago

BIRDS - stable release v0.1

This is now a fully fledged package with most functions you would need. More functions and integration to other packages to come. See the change log https://greensway.github.io/BIRDS/news/index.html

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 5 years ago

BIRDS - stable release v0.0.3

New functions added. See the change log https://greensway.github.io/BIRDS/news/index.html

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 5 years ago

BIRDS - stable release v0.0.2

new variables for exportBirds

Biosphere - Biodiversity Data Cleaning and Standardization - HTML
Published by aleruete over 5 years ago