GeoPressureR
R package which help researchers construct the trajectory of a bird equiped with an atmospheric pressure sensor.
https://github.com/Rafnuss/GeoPressureR
Category: Biosphere
Sub Category: Avian Monitoring and Analysis
Keywords
bird datalogger era5 geolocator migration pressure-sensor r tracker windspeed
Last synced: about 13 hours ago
JSON representation
Repository metadata
Global positioning by atmospheric pressure
- Host: GitHub
- URL: https://github.com/Rafnuss/GeoPressureR
- Owner: Rafnuss
- License: gpl-3.0
- Created: 2021-12-12T16:20:00.000Z (over 3 years ago)
- Default Branch: master
- Last Pushed: 2025-04-15T08:46:58.000Z (12 days ago)
- Last Synced: 2025-04-19T13:57:50.035Z (8 days ago)
- Topics: bird, datalogger, era5, geolocator, migration, pressure-sensor, r, tracker, windspeed
- Language: R
- Homepage: https://raphaelnussbaumer.com/GeoPressureR
- Size: 411 MB
- Stars: 7
- Watchers: 1
- Forks: 3
- Open Issues: 8
- Releases: 19
-
Metadata Files:
- Readme: README.Rmd
- Changelog: NEWS.md
- Contributing: .github/CONTRIBUTING.md
- License: LICENSE.md
- Citation: CITATION.cff
- Codemeta: codemeta.json
README.Rmd
--- output: github_document --- ```{r, include = FALSE} knitr::opts_chunk$set( collapse = TRUE, comment = "#>", fig.path = "man/figures/README-", out.width = "100%" ) ``` # GeoPressureR[](https://doi.org/10.5281/zenodo.7754457) [](https://github.com/Rafnuss/GeoPressureR/actions/workflows/R-CMD-check.yaml) [](https://github.com/Rafnuss/GeoPressureR/actions/workflows/pkgdown.yaml) [](https://app.codecov.io/gh/Rafnuss/GeoPressureR?branch=master) [](https://github.com/Rafnuss/GeoPressureR/actions/workflows/lint.yaml) [](https://lifecycle.r-lib.org/articles/stages.html#stable) **GeoPressureR** is a R package which help researchers construct the trajectory of a bird equipped with an atmospheric pressure sensor. The package is a direct implementation of methods presented in Nussbaumer et al. ([2023a](https://doi.org/10.1111/2041-210X.14043)) and Nussbaumer et al. ([2023b](https://doi.org/10.1111/2041-210X.14082)). ## Installation The best way to install the GeoPressureR package is through Github ``` r # install.packages("pak") pak::pkg_install("Rafnuss/GeoPressureR") ``` ## Learn how to use GeoPressureR The [GeoPressureManual](https://raphaelnussbaumer.com/GeoPressureManual/) is a great place to start learning about how to use GeoPressureR. Using the examples, this user guide takes you through each step of the analysis in detail. ## Start your own analysis Once you are familiar with the workflow of the method and want to start your own study, we suggest you use [GeoPressureTemplate](https://github.com/Rafnuss/GeoPressureTemplate), a [github template repository](https://docs.github.com/en/repositories/creating-and-managing-repositories/creating-a-template-repository) which provides a standard code structure for your analysis. Using this standardized code structure you will help you on many aspect: code sharing and troubleshooting, data archiving, work reproducibility. ## Cheatsheet
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## How to cite? Get citation information in R doing `citation("GeoPressureR")`. Make sure to cite the correct reference (R package, papers of the underlying method and/or user guide) according to your use.
Citation (CITATION.cff)
# -------------------------------------------- # CITATION file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ # -------------------------------------------- cff-version: 1.2.0 message: 'To cite package "GeoPressureR" in publications use:' type: software license: GPL-3.0-or-later title: 'GeoPressureR: Global Positioning by Atmospheric Pressure' version: 3.4.0 doi: 10.5281/zenodo.7754457 abstract: R package to determine the position and trajectory of a bird based on light-weight data-logger measuring at lease atmospheric pressure. authors: - family-names: Nussbaumer given-names: Raphaël email: [email protected] orcid: https://orcid.org/0000-0002-8185-1020 - family-names: Gravey given-names: Mathieu email: [email protected] orcid: https://orcid.org/0000-0002-0871-1507 preferred-citation: type: manual title: 'GeoPressureR: Global positioning by atmospheric pressure' authors: - family-names: Nussbaumer given-names: Raphael email: [email protected] orcid: https://orcid.org/0000-0002-8185-1020 - family-names: Gravey given-names: Mathieu email: [email protected] orcid: https://orcid.org/0000-0002-0871-1507 doi: 10.5281/zenodo.7754457 url: https://github.com/Rafnuss/GeoPressureR year: '2022' repository-code: https://github.com/Rafnuss/GeoPressureR url: https://raphaelnussbaumer.com/GeoPressureR/ contact: - family-names: Nussbaumer given-names: Raphaël email: [email protected] orcid: https://orcid.org/0000-0002-8185-1020 keywords: - bird - datalogger - era5 - geolocator - migration - pressure-sensor - r - tracker - windspeed references: - type: article title: Global positioning with animal-borne pressure sensors authors: - family-names: Nussbaumer given-names: Raphael email: [email protected] orcid: https://orcid.org/0000-0002-8185-1020 - family-names: Gravey given-names: Mathieu email: [email protected] orcid: https://orcid.org/0000-0002-0871-1507 - family-names: Briedis given-names: Martins email: [email protected] orcid: https://orcid.org/0000-0002-9434-9056 - family-names: Liechti given-names: Felix email: [email protected] orcid: https://orcid.org/0000-0001-9473-0837 doi: 10.1111/2041-210X.14043 year: '2023' journal: Methods in Ecology and Evolution volume: '14' issue: '4' start: 1104-1117 - type: article title: Reconstructing bird trajectories from pressure and wind data using a highly optimised hidden Markov model authors: - family-names: Nussbaumer given-names: Raphael email: [email protected] orcid: https://orcid.org/0000-0002-8185-1020 - family-names: Gravey given-names: Mathieu email: [email protected] orcid: https://orcid.org/0000-0002-0871-1507 - family-names: Briedis given-names: Martins email: [email protected] orcid: https://orcid.org/0000-0002-9434-9056 - family-names: Liechti given-names: Felix email: [email protected] orcid: https://orcid.org/0000-0001-9473-0837 - family-names: Sheldon given-names: Daniel orcid: https://orcid.org/0000-0002-4257-2432 doi: 10.1111/2041-210X.14082 year: '2023' journal: Methods in Ecology and Evolution volume: '14' issue: '4' start: '1' end: '32' - type: manual title: 'GeoPressureManual: Learn how to use GeoPressureR with examples.' authors: - family-names: Nussbaumer given-names: Raphael email: [email protected] orcid: https://orcid.org/0000-0002-8185-1020 - family-names: Nussbaumer given-names: Améline email: [email protected] orcid: https://orcid.org/0000-0003-1308-4154 doi: 10.5281/zenodo.10799355 url: https://github.com/Rafnuss/GeoPressureManual year: '2024' - type: software title: 'R: A Language and Environment for Statistical Computing' notes: Depends url: https://www.R-project.org/ authors: - name: R Core Team institution: name: R Foundation for Statistical Computing address: Vienna, Austria year: '2025' version: '>= 4.1.0' - type: software title: cli abstract: 'cli: Helpers for Developing Command Line Interfaces' notes: Imports url: https://cli.r-lib.org repository: https://CRAN.R-project.org/package=cli authors: - family-names: Csárdi given-names: Gábor email: [email protected] year: '2025' doi: 10.32614/CRAN.package.cli - type: software title: config abstract: 'config: Manage Environment Specific Configuration Values' notes: Imports url: https://rstudio.github.io/config/ repository: https://CRAN.R-project.org/package=config authors: - 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Owner metadata
- Name: Raphaël
- Login: Rafnuss
- Email:
- Kind: user
- Description:
- Website: https://raphaelnussbaumer.com/
- Location: Altkirch
- Twitter: rafnuss
- Company: Swiss Ornithological Institute
- Icon url: https://avatars.githubusercontent.com/u/7571260?u=cb33693946e8785392fd5fbf72cb78b7d8a80910&v=4
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Last Year
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Last synced: 6 days ago
Total Commits: 895
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Development Distribution Score (DDS): 0.016
Commits in past year: 166
Committers in past year: 2
Avg Commits per committer in past year: 83.0
Development Distribution Score (DDS) in past year: 0.006
Name | Commits | |
---|---|---|
rafnuss | r****s@g****m | 881 |
Améline Nussbaumer | a****r@g****m | 12 |
Pablo Capilla-Lasheras | p****a@g****m | 1 |
Jacob B. Socolar | j****r@g****m | 1 |
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Issue and Pull Request metadata
Last synced: 1 day ago
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Merged pull request: 43
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Past year issues: 5
Past year pull requests: 14
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Top Issue Authors
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Dependencies
- R >= 3.5.0 depends
- EBImage * imports
- Matrix * imports
- future * imports
- geosphere * imports
- httr * imports
- jsonlite * imports
- pracma * imports
- raster * imports
- stats * imports
- utils * imports
- BiocManager * suggests
- RColorBrewer * suggests
- covr * suggests
- ecmwfr * suggests
- ggplot2 * suggests
- gridExtra * suggests
- igraph * suggests
- knitr * suggests
- leaflet * suggests
- leaflet.extras * suggests
- ncdf4 * suggests
- plotly * suggests
- readr * suggests
- remotes * suggests
- rgdal * suggests
- rmarkdown * suggests
- rnaturalearth * suggests
- sf * suggests
- shiny * suggests
- shinyWidgets * suggests
- shinyjs * suggests
- sp * suggests
- testthat >= 3.0.0 suggests
- actions/checkout v3 composite
- r-lib/actions/check-r-package v2 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- actions/checkout v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- JamesIves/github-pages-deploy-action v4.4.1 composite
- actions/checkout v3 composite
- r-lib/actions/setup-pandoc v2 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- actions/checkout v3 composite
- actions/upload-artifact v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
- actions/checkout v3 composite
- r-lib/actions/setup-r v2 composite
- r-lib/actions/setup-r-dependencies v2 composite
Score: 4.0943445622221