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etn

Provides functionality to access data from the European Tracking Network (ETN) database hosted by the Flanders Marine Institute (VLIZ) as part of the Flemish contribution to LifeWatch.
https://github.com/inbo/etn

Category: Biosphere
Sub Category: Marine Life and Fishery

Keywords

animal-movement animal-tracking biologging data-access fish lifewatch oscibio r r-package rstats

Keywords from Contributors

opencpu gbif invasive-species checklist occurrences darwin-core frictionlessdata birds movement-ecology course-materials

Last synced: about 12 hours ago
JSON representation

Repository metadata

R package to access data from the European Tracking Network

README.Rmd

          ---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# etn 


[![CRAN status](https://www.r-pkg.org/badges/version/etn)](https://CRAN.R-project.org/package=etn)
[![repo status](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![R-CMD-check](https://github.com/inbo/etn/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/inbo/etn/actions/workflows/R-CMD-check.yaml)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.15235747.svg)](https://doi.org/10.5281/zenodo.15235747)


Etn provides functionality to access data from the [European Tracking Network (ETN)](http://www.lifewatch.be/etn/) database hosted by the Flanders Marine Institute (VLIZ) as part of the Flemish contribution to LifeWatch. ETN data is subject to the [ETN data policy](http://www.lifewatch.be/etn/assets/docs/ETN-DataPolicy.pdf) and can be:
 
- restricted: under moratorium and only accessible to logged-in data owners/collaborators
- unrestricted: publicly accessible without login and routinely published to international biodiversity facilities
 
The ETN infrastructure currently requires the package to be run within the [LifeWatch.be RStudio server](http://rstudio.lifewatch.be/), which is password protected. A login can be requested at http://www.lifewatch.be/etn/contact.

## Installation

You can install the development version of etn from [GitHub](https://github.com/) with:

``` r
# install.packages("devtools")
devtools::install_github("inbo/etn")
```

## Meta

- We welcome [contributions](.github/CONTRIBUTING.md) including bug reports.
- License: MIT
- Get citation information for etn in R doing `citation("etn")`.
- Please note that this project is released with a [Contributor Code of Conduct](.github/CODE_OF_CONDUCT.md). By participating in this project you agree to abide by its terms.

        

Citation (CITATION.cff)

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "etn" in publications use:'
type: software
license: MIT
title: 'etn: Access Data from the European Tracking Network'
version: 2.2.2
doi: 10.5281/zenodo.15235747
abstract: Package with functions to access and process data from the European Tracking
  Network hosted by VLIZ.
authors:
- family-names: Huybrechts
  given-names: Pieter
  email: [email protected]
  orcid: https://orcid.org/0000-0002-6658-6062
- family-names: Desmet
  given-names: Peter
  email: [email protected]
  orcid: https://orcid.org/0000-0002-8442-8025
- family-names: Oldoni
  given-names: Damiano
  email: [email protected]
  orcid: https://orcid.org/0000-0003-3445-7562
- family-names: Van Hoey
  given-names: Stijn
  email: [email protected]
  orcid: https://orcid.org/0000-0001-6413-3185
preferred-citation:
  type: manual
  title: 'etn: Access Data from the European Tracking Network'
  authors:
  - family-names: Huybrechts
    given-names: Pieter
    email: [email protected]
    orcid: https://orcid.org/0000-0002-6658-6062
  - family-names: Desmet
    given-names: Peter
    email: [email protected]
    orcid: https://orcid.org/0000-0002-8442-8025
  - family-names: Oldoni
    given-names: Damiano
    email: [email protected]
    orcid: https://orcid.org/0000-0003-3445-7562
  - family-names: Van Hoey
    given-names: Stijn
    email: [email protected]
    orcid: https://orcid.org/0000-0001-6413-3185
  year: '2025'
  notes: R package version 2.2.2
  url: https://inbo.github.io/etn/
  doi: 10.5281/zenodo.15235747
repository-code: https://github.com/inbo/etn
url: https://inbo.github.io/etn
contact:
- family-names: Huybrechts
  given-names: Pieter
  email: [email protected]
  orcid: https://orcid.org/0000-0002-6658-6062
keywords:
- animal-movement
- animal-tracking
- biologging
- data-access
- fish
- lifewatch
- oscibio
- r
- r-package
- rstats
references:
- type: software
  title: 'R: A Language and Environment for Statistical Computing'
  notes: Depends
  url: https://www.R-project.org/
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
  version: '>= 3.4.0'
- type: software
  title: assertthat
  abstract: 'assertthat: Easy Pre and Post Assertions'
  notes: Imports
  repository: https://CRAN.R-project.org/package=assertthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  year: '2025'
  doi: 10.32614/CRAN.package.assertthat
- type: software
  title: DBI
  abstract: 'DBI: R Database Interface'
  notes: Imports
  url: https://dbi.r-dbi.org
  repository: https://CRAN.R-project.org/package=DBI
  authors:
  - name: R Special Interest Group on Databases (R-SIG-DB)
  - family-names: Wickham
    given-names: Hadley
  - family-names: Müller
    given-names: Kirill
    email: [email protected]
    orcid: https://orcid.org/0000-0002-1416-3412
  year: '2025'
  doi: 10.32614/CRAN.package.DBI
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Imports
  url: https://dplyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=dplyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: François
    given-names: Romain
    orcid: https://orcid.org/0000-0002-2444-4226
  - family-names: Henry
    given-names: Lionel
  - family-names: Müller
    given-names: Kirill
    orcid: https://orcid.org/0000-0002-1416-3412
  - family-names: Vaughan
    given-names: Davis
    email: [email protected]
    orcid: https://orcid.org/0000-0003-4777-038X
  year: '2025'
  doi: 10.32614/CRAN.package.dplyr
- type: software
  title: glue
  abstract: 'glue: Interpreted String Literals'
  notes: Imports
  url: https://glue.tidyverse.org/
  repository: https://CRAN.R-project.org/package=glue
  authors:
  - family-names: Hester
    given-names: Jim
    orcid: https://orcid.org/0000-0002-2739-7082
  - family-names: Bryan
    given-names: Jennifer
    email: [email protected]
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2025'
  doi: 10.32614/CRAN.package.glue
- type: software
  title: jsonlite
  abstract: 'jsonlite: A Simple and Robust JSON Parser and Generator for R'
  notes: Imports
  url: https://jeroen.r-universe.dev/jsonlite
  repository: https://CRAN.R-project.org/package=jsonlite
  authors:
  - family-names: Ooms
    given-names: Jeroen
    email: [email protected]
    orcid: https://orcid.org/0000-0002-4035-0289
  year: '2025'
  doi: 10.32614/CRAN.package.jsonlite
- type: software
  title: lubridate
  abstract: 'lubridate: Make Dealing with Dates a Little Easier'
  notes: Imports
  url: https://lubridate.tidyverse.org
  repository: https://CRAN.R-project.org/package=lubridate
  authors:
  - family-names: Spinu
    given-names: Vitalie
    email: [email protected]
  - family-names: Grolemund
    given-names: Garrett
  - family-names: Wickham
    given-names: Hadley
  year: '2025'
  doi: 10.32614/CRAN.package.lubridate
- type: software
  title: methods
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2025'
- type: software
  title: odbc
  abstract: 'odbc: Connect to ODBC Compatible Databases (using the DBI Interface)'
  notes: Imports
  url: https://odbc.r-dbi.org
  repository: https://CRAN.R-project.org/package=odbc
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  - family-names: Gjoneski
    given-names: Oliver
  year: '2025'
  doi: 10.32614/CRAN.package.odbc
- type: software
  title: readr
  abstract: 'readr: Read Rectangular Text Data'
  notes: Imports
  url: https://readr.tidyverse.org
  repository: https://CRAN.R-project.org/package=readr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  - family-names: Hester
    given-names: Jim
  - family-names: Bryan
    given-names: Jennifer
    email: [email protected]
    orcid: https://orcid.org/0000-0002-6983-2759
  doi: 10.32614/CRAN.package.readr
  year: '2025'
- type: software
  title: stringr
  abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations'
  notes: Imports
  url: https://stringr.tidyverse.org
  repository: https://CRAN.R-project.org/package=stringr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  year: '2025'
  doi: 10.32614/CRAN.package.stringr
- type: software
  title: formattable
  abstract: 'formattable: Create ''Formattable'' Data Structures'
  notes: Suggests
  url: https://renkun-ken.github.io/formattable/
  repository: https://CRAN.R-project.org/package=formattable
  authors:
  - family-names: Ren
    given-names: Kun
    email: [email protected]
  - family-names: Russell
    given-names: Kenton
    email: [email protected]
  year: '2025'
  doi: 10.32614/CRAN.package.formattable
- type: software
  title: leaflet
  abstract: 'leaflet: Create Interactive Web Maps with the JavaScript ''Leaflet''
    Library'
  notes: Suggests
  url: https://rstudio.github.io/leaflet/
  repository: https://CRAN.R-project.org/package=leaflet
  authors:
  - family-names: Cheng
    given-names: Joe
    email: [email protected]
  - family-names: Schloerke
    given-names: Barret
    email: [email protected]
    orcid: https://orcid.org/0000-0001-9986-114X
  - family-names: Karambelkar
    given-names: Bhaskar
  - family-names: Xie
    given-names: Yihui
  year: '2025'
  doi: 10.32614/CRAN.package.leaflet
- type: software
  title: kableExtra
  abstract: 'kableExtra: Construct Complex Table with ''kable'' and Pipe Syntax'
  notes: Suggests
  url: http://haozhu233.github.io/kableExtra/
  repository: https://CRAN.R-project.org/package=kableExtra
  authors:
  - family-names: Zhu
    given-names: Hao
    email: [email protected]
    orcid: https://orcid.org/0000-0002-3386-6076
  year: '2025'
  doi: 10.32614/CRAN.package.kableExtra
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: [email protected]
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2025'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: [email protected]
  - family-names: Xie
    given-names: Yihui
    email: [email protected]
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: [email protected]
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: [email protected]
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: [email protected]
  - family-names: Atkins
    given-names: Aron
    email: [email protected]
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  - family-names: Cheng
    given-names: Joe
    email: [email protected]
  - family-names: Chang
    given-names: Winston
    email: [email protected]
  - family-names: Iannone
    given-names: Richard
    email: [email protected]
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2025'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  year: '2025'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
  title: tidyr
  abstract: 'tidyr: Tidy Messy Data'
  notes: Suggests
  url: https://tidyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=tidyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  - family-names: Vaughan
    given-names: Davis
    email: [email protected]
  - family-names: Girlich
    given-names: Maximilian
  year: '2025'
  doi: 10.32614/CRAN.package.tidyr
- type: software
  title: frictionless
  abstract: 'frictionless: Read and Write Frictionless Data Packages'
  notes: Suggests
  url: https://docs.ropensci.org/frictionless/
  repository: https://CRAN.R-project.org/package=frictionless
  authors:
  - family-names: Desmet
    given-names: Peter
    email: [email protected]
    orcid: https://orcid.org/0000-0002-8442-8025
    affiliation: Research Institute for Nature and Forest (INBO)
  - family-names: Oldoni
    given-names: Damiano
    email: [email protected]
    orcid: https://orcid.org/0000-0003-3445-7562
    affiliation: Research Institute for Nature and Forest (INBO)
  - family-names: Huybrechts
    given-names: Pieter
    email: [email protected]
    orcid: https://orcid.org/0000-0002-6658-6062
    affiliation: Research Institute for Nature and Forest (INBO)
  - family-names: Govaert
    given-names: Sanne
    email: [email protected]
    orcid: https://orcid.org/0000-0002-8939-1305
    affiliation: Research Institute for Nature and Forest (INBO)
  year: '2025'
  doi: 10.32614/CRAN.package.frictionless
- type: software
  title: withr
  abstract: 'withr: Run Code ''With'' Temporarily Modified Global State'
  notes: Suggests
  url: https://withr.r-lib.org
  repository: https://CRAN.R-project.org/package=withr
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Henry
    given-names: Lionel
    email: [email protected]
  - family-names: Müller
    given-names: Kirill
    email: [email protected]
  - family-names: Ushey
    given-names: Kevin
    email: [email protected]
  - family-names: Wickham
    given-names: Hadley
    email: [email protected]
  - family-names: Chang
    given-names: Winston
  year: '2025'
  doi: 10.32614/CRAN.package.withr


Owner metadata


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Last synced: 6 days ago

Total Commits: 903
Total Committers: 5
Avg Commits per committer: 180.6
Development Distribution Score (DDS): 0.453

Commits in past year: 33
Committers in past year: 2
Avg Commits per committer in past year: 16.5
Development Distribution Score (DDS) in past year: 0.091

Name Email Commits
peterdesmet p****t@i****e 494
damianooldoni d****i@i****e 196
stijnvanhoey s****y@g****m 124
PietrH p****y@g****m 86
jreubens j****s@v****e 3

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Issue and Pull Request metadata

Last synced: 1 day ago

Total issues: 153
Total pull requests: 39
Average time to close issues: 5 months
Average time to close pull requests: about 1 month
Total issue authors: 13
Total pull request authors: 3
Average comments per issue: 3.63
Average comments per pull request: 1.77
Merged pull request: 31
Bot issues: 0
Bot pull requests: 0

Past year issues: 61
Past year pull requests: 24
Past year average time to close issues: 20 days
Past year average time to close pull requests: 8 days
Past year issue authors: 5
Past year pull request authors: 2
Past year average comments per issue: 1.87
Past year average comments per pull request: 1.67
Past year merged pull request: 19
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/inbo/etn

Top Issue Authors

  • peterdesmet (71)
  • PietrH (60)
  • lottepohl (6)
  • PieterjanVerhelst (3)
  • cfmuniz (2)
  • aubrivliz (2)
  • JolienGoossens (2)
  • damianooldoni (2)
  • salvafern (1)
  • rubenpp7 (1)
  • jreubens (1)
  • arnclnge (1)
  • IPauwels (1)

Top Pull Request Authors

  • PietrH (25)
  • peterdesmet (12)
  • damianooldoni (2)

Top Issue Labels

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  • actionable (33)
  • bug (26)
  • API (24)
  • question (21)
  • documentation (21)
  • database (17)
  • data cleaning (5)
  • blocked (5)
  • help wanted (4)
  • dev (4)
  • wontfix (1)
  • duplicate (1)
  • Rstudio Server (1)

Top Pull Request Labels

  • documentation (3)
  • API (3)
  • actionable (2)
  • dev (1)
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Dependencies

DESCRIPTION cran
  • R >= 3.4.0 depends
  • DBI * imports
  • assertthat * imports
  • dplyr * imports
  • glue * imports
  • lubridate * imports
  • methods * imports
  • odbc <= 1.2.2 imports
  • readr * imports
  • stringr * imports
  • formattable * suggests
  • kableExtra * suggests
  • knitr * suggests
  • leaflet * suggests
  • rmarkdown * suggests
  • testthat * suggests
  • tidyr * suggests
docs/articles/acoustic_telemetry_files/leaflet-markercluster-1.0.5/package.json npm
  • jake ~0.5.16 development
  • jshint ~2.1.3 development
  • karma ~0.8.5 development
  • leaflet ~1.0.3 development
  • magic-string ^0.7.0 development
  • mocha ~1.10.0 development
  • uglify-js ~2.6.0 development

Score: 6.040254711277414