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etn

Provides functionality to access data from the European Tracking Network (ETN) database hosted by the Flanders Marine Institute (VLIZ) as part of the Flemish contribution to LifeWatch.
https://github.com/inbo/etn

Category: Biosphere
Sub Category: Marine Life and Fishery

Keywords

animal-movement animal-tracking biologging data-access fish lifewatch oscibio r r-package rstats

Keywords from Contributors

opencpu water climate biodiversity gbif biodiversity-informatics invasive-species checklist occurrences darwin-core

Last synced: about 6 hours ago
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Repository metadata

R package to access data from the European Tracking Network

README.Rmd 

          ---
output: github_document
---



```{r, include = FALSE}
knitr::opts_chunk$set(
  collapse = TRUE,
  comment = "#>",
  fig.path = "man/figures/README-",
  out.width = "100%"
)
```

# etn etn website


[![CRAN status](https://www.r-pkg.org/badges/version/etn)](https://CRAN.R-project.org/package=etn)
[![R-universe version](https://inbo.r-universe.dev/etn/badges/version)](https://inbo.r-universe.dev/etn)
[![R-CMD-check](https://github.com/inbo/etn/actions/workflows/R-CMD-check.yaml/badge.svg)](https://github.com/inbo/etn/actions/workflows/R-CMD-check.yaml)
[![codecov](https://codecov.io/gh/inbo/etn/branch/main/graph/badge.svg)](https://app.codecov.io/gh/inbo/etn)
[![repo status](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
[![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.15235747.svg)](https://doi.org/10.5281/zenodo.15235747)


etn is an R package to access data from the [European Tracking Network (ETN)](https://www.lifewatch.be/etn/). With etn you can query metadata (animals, tags, deployments, receivers, projects) and data (acoustic detections, sensor data) from the ETN database and use these in your analyses. Data access requires user credentials and is subject to a [data policy](https://europeantrackingnetwork.org/en/4-data-policy-permissions-citation-guidelines-and-data-use).

To get started, see:

- [Configure credentials](https://inbo.github.io/etn/articles/authentication.html).
- [Function reference](https://inbo.github.io/etn/reference/index.html): overview of all functions.
- [Explore acoustic telemetry data](https://inbo.github.io/etn/articles/acoustic_telemetry.html).

## Installation

You can install the development version of etn from [GitHub](https://github.com/) with:

``` r
# install.packages("pak")
pak::pak("inbo/etn")
```

## Usage

Before you can access data from the European Tracking Network, you need to register for a MarinePass account at the Flanders Marine Institute (VLIZ). See [authentication](https://inbo.github.io/etn/articles/authentication.html#dont-have-an-account-to-etn) for instructions.

With etn you can query ETN (meta)data:

```{r example}
library(etn)

# Get animal metadata for a project
get_animals(animal_project_code = "2014_demer")

# Get acoustic detections for a tag and time period
get_acoustic_detections(
  tag_serial_number = "1171781",
  start_date = "2014-06-01",
  end_date = "2014-06-15"
)
```

## Meta

- We welcome [contributions](.github/CONTRIBUTING.md) including bug reports.
- License: MIT
- Get citation information for etn in R doing `citation("etn")`.
- Please note that this project is released with a [Contributor Code of Conduct](.github/CODE_OF_CONDUCT.md). By participating in this project you agree to abide by its terms.

Citation (CITATION.cff)

# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "etn" in publications use:'
type: software
license: MIT
title: 'etn: Access Data from the European Tracking Network'
version: 3.0.0
doi: 10.5281/zenodo.15235747
abstract: Access data from the European Tracking Network ('ETN', <https://www.lifewatch.be/etn/>).
  With etn you can query metadata (animals, tags, deployments, receivers, projects)
  and data (acoustic detections, sensor data) from the 'ETN' database and use these
  in your analyses. Data access requires user credentials and is subject to a data
  policy.
authors:
- family-names: Huybrechts
  given-names: Pieter
  email: pieter.huybrechts@inbo.be
  orcid: https://orcid.org/0000-0002-6658-6062
- family-names: Desmet
  given-names: Peter
  email: peter.desmet@inbo.be
  orcid: https://orcid.org/0000-0002-8442-8025
- family-names: Oldoni
  given-names: Damiano
  email: damiano.oldoni@inbo.be
  orcid: https://orcid.org/0000-0003-3445-7562
- family-names: Van Hoey
  given-names: Stijn
  email: stijnvanhoey@gmail.com
  orcid: https://orcid.org/0000-0001-6413-3185
preferred-citation:
  type: manual
  title: 'etn: Access Data from the European Tracking Network'
  authors:
  - family-names: Huybrechts
    given-names: Pieter
    email: pieter.huybrechts@inbo.be
    orcid: https://orcid.org/0000-0002-6658-6062
  - family-names: Desmet
    given-names: Peter
    email: peter.desmet@inbo.be
    orcid: https://orcid.org/0000-0002-8442-8025
  - family-names: Oldoni
    given-names: Damiano
    email: damiano.oldoni@inbo.be
    orcid: https://orcid.org/0000-0003-3445-7562
  - family-names: Van Hoey
    given-names: Stijn
    email: stijnvanhoey@gmail.com
    orcid: https://orcid.org/0000-0001-6413-3185
  year: '2026'
  notes: R package version 3.0.0
  url: https://inbo.github.io/etn/
  doi: 10.5281/zenodo.15235747
repository-code: https://github.com/inbo/etn
url: https://inbo.github.io/etn/
contact:
- family-names: Huybrechts
  given-names: Pieter
  email: pieter.huybrechts@inbo.be
  orcid: https://orcid.org/0000-0002-6658-6062
keywords:
- animal-movement
- animal-tracking
- biologging
- data-access
- fish
- lifewatch
- oscibio
- r
- r-package
- rstats
references:
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  notes: Depends
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    address: Vienna, Austria
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  abstract: 'cachem: Cache R Objects with Automatic Pruning'
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  year: '2026'
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  abstract: 'cli: Helpers for Developing Command Line Interfaces'
  notes: Imports
  url: https://cli.r-lib.org
  repository: https://CRAN.R-project.org/package=cli
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: gabor@posit.co
  year: '2026'
  doi: 10.32614/CRAN.package.cli
- type: software
  title: dplyr
  abstract: 'dplyr: A Grammar of Data Manipulation'
  notes: Imports
  url: https://dplyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=dplyr
  authors:
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    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
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  year: '2026'
  doi: 10.32614/CRAN.package.dplyr
- type: software
  title: etnservice
  abstract: 'etnservice: Serve Data from the European Tracking Network'
  notes: Imports
  url: https://github.com/inbo/etnservice
  authors:
  - family-names: Huybrechts
    given-names: Pieter
    email: pieter.huybrechts@inbo.be
    orcid: https://orcid.org/0000-0002-6658-6062
  - family-names: Desmet
    given-names: Peter
    email: peter.desmet@inbo.be
    orcid: https://orcid.org/0000-0002-8442-8025
  year: '2026'
  version: '>= 0.5.0'
- type: software
  title: glue
  abstract: 'glue: Interpreted String Literals'
  notes: Imports
  url: https://glue.tidyverse.org/
  repository: https://CRAN.R-project.org/package=glue
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    given-names: Jim
    orcid: https://orcid.org/0000-0002-2739-7082
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    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2026'
  doi: 10.32614/CRAN.package.glue
- type: software
  title: httr2
  abstract: 'httr2: Perform HTTP Requests and Process the Responses'
  notes: Imports
  url: https://httr2.r-lib.org
  repository: https://CRAN.R-project.org/package=httr2
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2026'
  doi: 10.32614/CRAN.package.httr2
- type: software
  title: lifecycle
  abstract: 'lifecycle: Manage the Life Cycle of your Package Functions'
  notes: Imports
  url: https://lifecycle.r-lib.org/
  repository: https://CRAN.R-project.org/package=lifecycle
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  year: '2026'
  doi: 10.32614/CRAN.package.lifecycle
- type: software
  title: memoise
  abstract: 'memoise: ''Memoisation'' of Functions'
  notes: Imports
  url: https://memoise.r-lib.org
  repository: https://CRAN.R-project.org/package=memoise
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@rstudio.com
  - family-names: Hester
    given-names: Jim
  - family-names: Chang
    given-names: Winston
    email: winston@rstudio.com
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
  - family-names: Cook
    given-names: Daniel
    email: danielecook@gmail.com
  year: '2026'
  doi: 10.32614/CRAN.package.memoise
- type: software
  title: methods
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2026'
- type: software
  title: prettyunits
  abstract: 'prettyunits: Pretty, Human Readable Formatting of Quantities'
  notes: Imports
  url: https://github.com/r-lib/prettyunits
  repository: https://CRAN.R-project.org/package=prettyunits
  authors:
  - family-names: Csardi
    given-names: Gabor
    email: csardi.gabor@gmail.com
  year: '2026'
  doi: 10.32614/CRAN.package.prettyunits
- type: software
  title: purrr
  abstract: 'purrr: Functional Programming Tools'
  notes: Imports
  url: https://purrr.tidyverse.org/
  repository: https://CRAN.R-project.org/package=purrr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
    orcid: https://orcid.org/0000-0003-4757-117X
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  year: '2026'
  doi: 10.32614/CRAN.package.purrr
- type: software
  title: readr
  abstract: 'readr: Read Rectangular Text Data'
  notes: Imports
  url: https://readr.tidyverse.org
  repository: https://CRAN.R-project.org/package=readr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Hester
    given-names: Jim
  - family-names: Bryan
    given-names: Jennifer
    email: jenny@posit.co
    orcid: https://orcid.org/0000-0002-6983-2759
  year: '2026'
  doi: 10.32614/CRAN.package.readr
- type: software
  title: rlang
  abstract: 'rlang: Functions for Base Types and Core R and ''Tidyverse'' Features'
  notes: Imports
  url: https://rlang.r-lib.org
  repository: https://CRAN.R-project.org/package=rlang
  authors:
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2026'
  doi: 10.32614/CRAN.package.rlang
- type: software
  title: stringr
  abstract: 'stringr: Simple, Consistent Wrappers for Common String Operations'
  notes: Imports
  url: https://stringr.tidyverse.org
  repository: https://CRAN.R-project.org/package=stringr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2026'
  doi: 10.32614/CRAN.package.stringr
- type: software
  title: utils
  abstract: 'R: A Language and Environment for Statistical Computing'
  notes: Imports
  authors:
  - name: R Core Team
  institution:
    name: R Foundation for Statistical Computing
    address: Vienna, Austria
  year: '2026'
- type: software
  title: withr
  abstract: 'withr: Run Code ''With'' Temporarily Modified Global State'
  notes: Imports
  url: https://withr.r-lib.org
  repository: https://CRAN.R-project.org/package=withr
  authors:
  - family-names: Hester
    given-names: Jim
  - family-names: Henry
    given-names: Lionel
    email: lionel@posit.co
  - family-names: Müller
    given-names: Kirill
    email: krlmlr+r@mailbox.org
  - family-names: Ushey
    given-names: Kevin
    email: kevinushey@gmail.com
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Chang
    given-names: Winston
  year: '2026'
  doi: 10.32614/CRAN.package.withr
- type: software
  title: formattable
  abstract: 'formattable: Create ''Formattable'' Data Structures'
  notes: Suggests
  url: https://renkun-ken.github.io/formattable/
  repository: https://CRAN.R-project.org/package=formattable
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    email: kent.russell@timelyportfolio.com
  year: '2026'
  doi: 10.32614/CRAN.package.formattable
- type: software
  title: frictionless
  abstract: 'frictionless: Read and Write Frictionless Data Packages'
  notes: Suggests
  url: https://docs.ropensci.org/frictionless/
  repository: https://CRAN.R-project.org/package=frictionless
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    given-names: Peter
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    orcid: https://orcid.org/0000-0002-8442-8025
    affiliation: Research Institute for Nature and Forest (INBO)
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    given-names: Damiano
    email: damiano.oldoni@inbo.be
    orcid: https://orcid.org/0000-0003-3445-7562
    affiliation: Research Institute for Nature and Forest (INBO)
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    given-names: Pieter
    email: pieter.huybrechts@inbo.be
    orcid: https://orcid.org/0000-0002-6658-6062
    affiliation: Research Institute for Nature and Forest (INBO)
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    given-names: Sanne
    email: sanne.govaert@inbo.be
    orcid: https://orcid.org/0000-0002-8939-1305
    affiliation: Research Institute for Nature and Forest (INBO)
  year: '2026'
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- type: software
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  abstract: 'kableExtra: Construct Complex Table with ''kable'' and Pipe Syntax'
  notes: Suggests
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  repository: https://CRAN.R-project.org/package=kableExtra
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    given-names: Hao
    email: haozhu233@gmail.com
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  year: '2026'
  doi: 10.32614/CRAN.package.kableExtra
- type: software
  title: knitr
  abstract: 'knitr: A General-Purpose Package for Dynamic Report Generation in R'
  notes: Suggests
  url: https://yihui.org/knitr/
  repository: https://CRAN.R-project.org/package=knitr
  authors:
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  year: '2026'
  doi: 10.32614/CRAN.package.knitr
- type: software
  title: leaflet
  abstract: 'leaflet: Create Interactive Web Maps with the JavaScript ''Leaflet''
    Library'
  notes: Suggests
  url: https://rstudio.github.io/leaflet/
  repository: https://CRAN.R-project.org/package=leaflet
  authors:
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Schloerke
    given-names: Barret
    email: barret@posit.co
    orcid: https://orcid.org/0000-0001-9986-114X
  - family-names: Karambelkar
    given-names: Bhaskar
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    given-names: Yihui
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    given-names: Garrick
    email: garrick@posit.co
    orcid: https://orcid.org/0000-0002-7111-0077
  year: '2026'
  doi: 10.32614/CRAN.package.leaflet
- type: software
  title: lubridate
  abstract: 'lubridate: Make Dealing with Dates a Little Easier'
  notes: Suggests
  url: https://lubridate.tidyverse.org
  repository: https://CRAN.R-project.org/package=lubridate
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    given-names: Vitalie
    email: spinuvit@gmail.com
  - family-names: Grolemund
    given-names: Garrett
  - family-names: Wickham
    given-names: Hadley
  year: '2026'
  doi: 10.32614/CRAN.package.lubridate
- type: software
  title: pak
  abstract: 'pak: Another Approach to Package Installation'
  notes: Suggests
  url: https://pak.r-lib.org/
  repository: https://CRAN.R-project.org/package=pak
  authors:
  - family-names: Csárdi
    given-names: Gábor
    email: csardi.gabor@gmail.com
  - family-names: Hester
    given-names: Jim
  year: '2026'
  doi: 10.32614/CRAN.package.pak
- type: software
  title: rmarkdown
  abstract: 'rmarkdown: Dynamic Documents for R'
  notes: Suggests
  url: https://pkgs.rstudio.com/rmarkdown/
  repository: https://CRAN.R-project.org/package=rmarkdown
  authors:
  - family-names: Allaire
    given-names: JJ
    email: jj@posit.co
  - family-names: Xie
    given-names: Yihui
    email: xie@yihui.name
    orcid: https://orcid.org/0000-0003-0645-5666
  - family-names: Dervieux
    given-names: Christophe
    email: cderv@posit.co
    orcid: https://orcid.org/0000-0003-4474-2498
  - family-names: McPherson
    given-names: Jonathan
    email: jonathan@posit.co
  - family-names: Luraschi
    given-names: Javier
  - family-names: Ushey
    given-names: Kevin
    email: kevin@posit.co
  - family-names: Atkins
    given-names: Aron
    email: aron@posit.co
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Cheng
    given-names: Joe
    email: joe@posit.co
  - family-names: Chang
    given-names: Winston
    email: winston@posit.co
  - family-names: Iannone
    given-names: Richard
    email: rich@posit.co
    orcid: https://orcid.org/0000-0003-3925-190X
  year: '2026'
  doi: 10.32614/CRAN.package.rmarkdown
- type: software
  title: testthat
  abstract: 'testthat: Unit Testing for R'
  notes: Suggests
  url: https://testthat.r-lib.org
  repository: https://CRAN.R-project.org/package=testthat
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2026'
  doi: 10.32614/CRAN.package.testthat
  version: '>= 3.0.0'
- type: software
  title: tidyr
  abstract: 'tidyr: Tidy Messy Data'
  notes: Suggests
  url: https://tidyr.tidyverse.org
  repository: https://CRAN.R-project.org/package=tidyr
  authors:
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  - family-names: Vaughan
    given-names: Davis
    email: davis@posit.co
  - family-names: Girlich
    given-names: Maximilian
  year: '2026'
  doi: 10.32614/CRAN.package.tidyr
- type: software
  title: vcr
  abstract: 'vcr: Record ''HTTP'' Calls to Disk'
  notes: Suggests
  url: https://github.com/ropensci/vcr/
  repository: https://CRAN.R-project.org/package=vcr
  authors:
  - family-names: Chamberlain
    given-names: Scott
    email: myrmecocystus@gmail.com
    orcid: https://orcid.org/0000-0003-1444-9135
  - family-names: Wolen
    given-names: Aaron
    orcid: https://orcid.org/0000-0003-2542-2202
  - family-names: Salmon
    given-names: Maëlle
    orcid: https://orcid.org/0000-0002-2815-0399
  - family-names: Possenriede
    given-names: Daniel
    orcid: https://orcid.org/0000-0002-6738-9845
  - family-names: Wickham
    given-names: Hadley
    email: hadley@posit.co
  year: '2026'
  doi: 10.32614/CRAN.package.vcr

Owner metadata

GitHub Events

Total
Last Year

Committers metadata

Last synced: 15 days ago

Total Commits: 1,852
Total Committers: 8
Avg Commits per committer: 231.5
Development Distribution Score (DDS): 0.518

Commits in past year: 684
Committers in past year: 4
Avg Commits per committer in past year: 171.0
Development Distribution Score (DDS) in past year: 0.2

Name Email Commits
PietrH p****y@g****m 892
peterdesmet p****t@i****e 566
damianooldoni d****i@i****e 196
stijnvanhoey s****y@g****m 124
pieter.huybrechts@inbo.be p****s@i****e@r****e 68
jreubens j****s@v****e 3
copilot-swe-agent[bot] 1****t 2
pieter.huybrechts@inbo.be p****s@i****e@r****e 1

Committer domains:

Issue and Pull Request metadata

Last synced: 11 days ago

Total issues: 183
Total pull requests: 89
Average time to close issues: 7 months
Average time to close pull requests: about 1 month
Total issue authors: 13
Total pull request authors: 3
Average comments per issue: 3.17
Average comments per pull request: 1.63
Merged pull request: 62
Bot issues: 0
Bot pull requests: 0

Past year issues: 54
Past year pull requests: 45
Past year average time to close issues: 26 days
Past year average time to close pull requests: 5 days
Past year issue authors: 4
Past year pull request authors: 2
Past year average comments per issue: 1.61
Past year average comments per pull request: 1.49
Past year merged pull request: 29
Past year bot issues: 0
Past year bot pull requests: 0

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/inbo/etn

Top Issue Authors

  • PietrH (84)
  • peterdesmet (75)
  • lottepohl (7)
  • PieterjanVerhelst (4)
  • cfmuniz (2)
  • aubrivliz (2)
  • JolienGoossens (2)
  • damianooldoni (2)
  • salvafern (1)
  • rubenpp7 (1)
  • jreubens (1)
  • arnclnge (1)
  • IPauwels (1)

Top Pull Request Authors

  • PietrH (69)
  • peterdesmet (18)
  • damianooldoni (2)

Top Issue Labels

  • enhancement (36)
  • actionable (33)
  • bug (28)
  • question (24)
  • documentation (23)
  • API (20)
  • database (20)
  • dev (6)
  • help wanted (5)
  • data cleaning (5)
  • blocked (3)
  • Rstudio Server (2)
  • wontfix (1)
  • duplicate (1)

Top Pull Request Labels

  • API (8)
  • documentation (6)
  • blocked (5)
  • dev (3)
  • actionable (2)
  • enhancement (2)
  • Rstudio Server (1)

Package metadata

proxy.golang.org: github.com/inbo/etn

  • Homepage:
  • Documentation: https://pkg.go.dev/github.com/inbo/etn#section-documentation
  • Licenses: mit
  • Latest release: v3.0.0+incompatible (published 22 days ago)
  • Last Synced: 2026-03-08T08:04:08.076Z (10 days ago)
  • Versions: 8
  • Dependent Packages: 0
  • Dependent Repositories: 0
  • Rankings:
    • Dependent packages count: 5.395%
    • Average: 5.576%
    • Dependent repos count: 5.758%

Dependencies

DESCRIPTION cran
  • R >= 3.4.0 depends
  • DBI * imports
  • assertthat * imports
  • dplyr * imports
  • glue * imports
  • lubridate * imports
  • methods * imports
  • odbc <= 1.2.2 imports
  • readr * imports
  • stringr * imports
  • formattable * suggests
  • kableExtra * suggests
  • knitr * suggests
  • leaflet * suggests
  • rmarkdown * suggests
  • testthat * suggests
  • tidyr * suggests
docs/articles/acoustic_telemetry_files/leaflet-markercluster-1.0.5/package.json npm
  • jake ~0.5.16 development
  • jshint ~2.1.3 development
  • karma ~0.8.5 development
  • leaflet ~1.0.3 development
  • magic-string ^0.7.0 development
  • mocha ~1.10.0 development
  • uglify-js ~2.6.0 development

Score: -Infinity