Polaris - v0.10.0

What's Changed

• Update to 0.10.0-alpha.1 by @xylar in https://github.com/E3SM-Project/polaris/pull/411
• Write POLARIS TASK: PASS/FAIL to task log file by @xylar in https://github.com/E3SM-Project/polaris/pull/424
• Add Python 3.14 testing to CI workflows by @Copilot in https://github.com/E3SM-Project/polaris/pull/410
• Add seamount test case by @mark-petersen in https://github.com/E3SM-Project/polaris/pull/418
• Use open_model_dataset for validate by @cbegeman in https://github.com/E3SM-Project/polaris/pull/431
• Fix baseline comparison for tasks that have already run by @xylar in https://github.com/E3SM-Project/polaris/pull/434
• Move default build directory within work directory by @xylar in https://github.com/E3SM-Project/polaris/pull/429
• Fixes to build and provenance by @xylar in https://github.com/E3SM-Project/polaris/pull/439
• Remove machine morpheus and add machine katara by @xylar in https://github.com/E3SM-Project/polaris/pull/438
• Add ocean model conservation checks by @cbegeman in https://github.com/E3SM-Project/polaris/pull/437
• Fix mesh filename from init steps in convergence tasks by @xylar in https://github.com/E3SM-Project/polaris/pull/442
• Update e3sm_update utility to support Omega by @xylar in https://github.com/E3SM-Project/polaris/pull/452
• Fix mapping MPAS-O to Omega config options by @xylar in https://github.com/E3SM-Project/polaris/pull/451
• Update Omega submodule to current develop by @xylar in https://github.com/E3SM-Project/polaris/pull/449
• Skip ocean model detection and build when none is needed by @xylar in https://github.com/E3SM-Project/polaris/pull/454
• Enhance custom visualization capabilities by @cbegeman in https://github.com/E3SM-Project/polaris/pull/446
• Add utility for zMid by @cbegeman in https://github.com/E3SM-Project/polaris/pull/453
• Modify Omega suites by @cbegeman in https://github.com/E3SM-Project/polaris/pull/455
• Update Omega submodule by @xylar in https://github.com/E3SM-Project/polaris/pull/457
• Reduce tracer3 convergence threshold in rotation_2d by @xylar in https://github.com/E3SM-Project/polaris/pull/462
• add seamount images by @mark-petersen in https://github.com/E3SM-Project/polaris/pull/466
• Switch to autobuild as the recommended build workflow by @xylar in https://github.com/E3SM-Project/polaris/pull/467
• Switch Polaris to using Physical Constants Dictionary by @xylar in https://github.com/E3SM-Project/polaris/pull/468
• Translate linear EOS between MPAS-Ocean and Omega by @cbegeman in https://github.com/E3SM-Project/polaris/pull/458
• Add TEOS-10 and z-tilde vertical coordinate by @xylar in https://github.com/E3SM-Project/polaris/pull/464
• Fixup eos config option by @cbegeman in https://github.com/E3SM-Project/polaris/pull/483
• Enable thickness advection for Omega sphere transport tests by @cbegeman in https://github.com/E3SM-Project/polaris/pull/476
• Update Omega submodule by @sbrus89 in https://github.com/E3SM-Project/polaris/pull/485
• Get Omega reference density from polaris.constants when computing z-tilde by @xylar in https://github.com/E3SM-Project/polaris/pull/489
• Several fixes to the documentation of the command-line tools by @xylar in https://github.com/E3SM-Project/polaris/pull/493
• Always recompute angleEdge for spherical meshes by @cbegeman in https://github.com/E3SM-Project/polaris/pull/479
• Fix seawater density in conservation check by @xylar in https://github.com/E3SM-Project/polaris/pull/494
• Allow CTest util to use an existing Omega build by @xylar in https://github.com/E3SM-Project/polaris/pull/496
• Use one IO task per node for Omega runs by @xylar in https://github.com/E3SM-Project/polaris/pull/495
• Add omega support for merry-go-round test by @cbegeman in https://github.com/E3SM-Project/polaris/pull/478
• Disable more terms in geostrophic test by @cbegeman in https://github.com/E3SM-Project/polaris/pull/499

New Contributors

• @mark-petersen made their first contribution in https://github.com/E3SM-Project/polaris/pull/418

Full Changelog: https://github.com/E3SM-Project/polaris/compare/0.9.0...0.10.0

Cryosphere - Sea Ice - Python
Published by xylar 3 months ago

Polaris - v0.9.0

What's Changed

• Update to 0.9.0 alpha.1 by @xylar in https://github.com/E3SM-Project/polaris/pull/366
• Update to v0.9.0-alpha.2 with mpas_tools v1.3.2 by @xylar in https://github.com/E3SM-Project/polaris/pull/374
• Remove @altheaden from reviewer lists by @altheaden in https://github.com/E3SM-Project/polaris/pull/377
• Fix CTest support template and script by @grnydawn in https://github.com/E3SM-Project/polaris/pull/381
• Update to polaris 0.9.0-alpha.3 by @andrewdnolan in https://github.com/E3SM-Project/polaris/pull/386
• Switch to Tranche config parser by @xylar in https://github.com/E3SM-Project/polaris/pull/391
• Fix omega_pr test suite by @xylar in https://github.com/E3SM-Project/polaris/pull/384
• Translate variable names for Omega before baseline validation by @xylar in https://github.com/E3SM-Project/polaris/pull/398
• By default, detect ocean model based on files in path by @xylar in https://github.com/E3SM-Project/polaris/pull/401
• Bump mosaic version and tighten planar periodic axis limits by @andrewdnolan in https://github.com/E3SM-Project/polaris/pull/400
• Write output useful for Omega PRs by @xylar in https://github.com/E3SM-Project/polaris/pull/387
• Add customizable global viz task by @cbegeman in https://github.com/E3SM-Project/polaris/pull/383
• Fix nested config sections in mapping MPAS-Ocean --> Omega by @xylar in https://github.com/E3SM-Project/polaris/pull/407
• Add automated MPAS-Ocean and Omega builds to polaris setup/suite by @xylar in https://github.com/E3SM-Project/polaris/pull/402
• Improve output from Omega CTest utility by @xylar in https://github.com/E3SM-Project/polaris/pull/385
• Output baseline comparison results for steps already run by @xylar in https://github.com/E3SM-Project/polaris/pull/403
• Fix suite name during setup by @xylar in https://github.com/E3SM-Project/polaris/pull/415
• Escape back-ticks in Omega CTest summary by @xylar in https://github.com/E3SM-Project/polaris/pull/416
• Add idealized barotropic channel to evaluate horizontal momentum BCs by @cbegeman in https://github.com/E3SM-Project/polaris/pull/353
• Add omega support and enhance barotropic_gyre by @cbegeman in https://github.com/E3SM-Project/polaris/pull/286
• Fixup the location of the shared overflow cfg file by @cbegeman in https://github.com/E3SM-Project/polaris/pull/419
• Update the bisection utility to support Omega by @xylar in https://github.com/E3SM-Project/polaris/pull/417
• Fix path for barotropic_channel shared config file by @xylar in https://github.com/E3SM-Project/polaris/pull/423

New Contributors

• @grnydawn made their first contribution in https://github.com/E3SM-Project/polaris/pull/381

Full Changelog: https://github.com/E3SM-Project/polaris/compare/0.8.0...0.9.0

Cryosphere - Sea Ice - Python
Published by xylar 6 months ago

Polaris - v0.8.0

What's Changed

• Update to 0.8.0 alpha.1 by @xylar in https://github.com/E3SM-Project/polaris/pull/319
• Update combine topo to leave land surface elevation by @xylar in https://github.com/E3SM-Project/polaris/pull/323
• Allow reuse of mosaic descriptor in spherical plots by @xylar in https://github.com/E3SM-Project/polaris/pull/326
• Add steps and tasks for remapping topography by @xylar in https://github.com/E3SM-Project/polaris/pull/321
• Fix zidx in sphere_transport analysis by @xylar in https://github.com/E3SM-Project/polaris/pull/330
• Clean up shared steps by @xylar in https://github.com/E3SM-Project/polaris/pull/327
• Add cache files for base meshes by @xylar in https://github.com/E3SM-Project/polaris/pull/329
• Port ocean overflow test case by @cbegeman in https://github.com/E3SM-Project/polaris/pull/311
• External gravity wave by @jeremy-lilly in https://github.com/E3SM-Project/polaris/pull/325
• Fix incorrect import in external gravity wave by @xylar in https://github.com/E3SM-Project/polaris/pull/336
• Switch to writing files in CDF5 (NETCDF3_64BIT_DATA) format by @xylar in https://github.com/E3SM-Project/polaris/pull/333
• Add support for Aurora by @xylar in https://github.com/E3SM-Project/polaris/pull/318
• Fix calls to write_job_script() by @xylar in https://github.com/E3SM-Project/polaris/pull/338
• Fix a bug in the resolution limit given in the barotropic gyre case by @cbegeman in https://github.com/E3SM-Project/polaris/pull/335
• Change pre-commit hook ID to ruff-check by @altheaden in https://github.com/E3SM-Project/polaris/pull/343
• Enhance ocean single column tests by @cbegeman in https://github.com/E3SM-Project/polaris/pull/342
• Add docs on updating Conda and Spack dependencies by @xylar in https://github.com/E3SM-Project/polaris/pull/347
• Update tutorial by @xylar in https://github.com/E3SM-Project/polaris/pull/349
• Port merry-go-round testcase from compass by @andrewdnolan in https://github.com/E3SM-Project/polaris/pull/284
• Switch pre-commit update workflow to use conda; various small changes by @altheaden in https://github.com/E3SM-Project/polaris/pull/354
• Fix typo in the docs by @xylar in https://github.com/E3SM-Project/polaris/pull/356
• Add steps and tasks for culling topography by @xylar in https://github.com/E3SM-Project/polaris/pull/339
• Update polaris to 0.8.0-alpah.4 by @xylar in https://github.com/E3SM-Project/polaris/pull/360
• Add a new "ice" version of the logo by @xylar in https://github.com/E3SM-Project/polaris/pull/361
• Add SO and RRS meshes by @xylar in https://github.com/E3SM-Project/polaris/pull/359
• Remove craygnu-hipcc compiler from frontier spack by @xylar in https://github.com/E3SM-Project/polaris/pull/365
• Fix assigning resolution for fixed-res base meshes by @xylar in https://github.com/E3SM-Project/polaris/pull/367

New Contributors

• @jeremy-lilly made their first contribution in https://github.com/E3SM-Project/polaris/pull/325

Full Changelog: https://github.com/E3SM-Project/polaris/compare/0.7.0...0.8.0

Cryosphere - Sea Ice - Python
Published by xylar 6 months ago

Polaris - v0.7.0

What's Changed

• Update logo, with a smaller and larger version by @altheaden in https://github.com/E3SM-Project/polaris/pull/299
• Update to 0.7.0-alpha.1 by @xylar in https://github.com/E3SM-Project/polaris/pull/295
• Reorganize tasks in polaris.tasks.{component} by @xylar in https://github.com/E3SM-Project/polaris/pull/303
• Switch logo in docs to smaller version by @altheaden in https://github.com/E3SM-Project/polaris/pull/304
• Add a mesh component by @xylar in https://github.com/E3SM-Project/polaris/pull/305
• Switch to a custom version dropdown by @xylar in https://github.com/E3SM-Project/polaris/pull/308
• Update code for version switcher to match pyremap by @xylar in https://github.com/E3SM-Project/polaris/pull/309
• Add a step for combining global and Antarctic topography by @xylar in https://github.com/E3SM-Project/polaris/pull/300
• Make mapping filename an absolute path by @xylar in https://github.com/E3SM-Project/polaris/pull/313
• Add a step for combining topography at low res (ne120) by @xylar in https://github.com/E3SM-Project/polaris/pull/315
• Fix mapping method 'conserve' in ISOMIP+ tests by @xylar in https://github.com/E3SM-Project/polaris/pull/320

Full Changelog: https://github.com/E3SM-Project/polaris/compare/0.6.0...0.7.0

Cryosphere - Sea Ice - Python
Published by xylar about 1 year ago

Polaris - v0.6.0

What's Changed

• Update to 0.6.0-alpha.1 by @xylar in https://github.com/E3SM-Project/polaris/pull/282
• Update E3SM-Project submodule to current master by @xylar in https://github.com/E3SM-Project/polaris/pull/287
• Add --account to CTest instructions by @altheaden in https://github.com/E3SM-Project/polaris/pull/288
• Fix planar plots with log norm by @xylar in https://github.com/E3SM-Project/polaris/pull/289
• Switch linting to use ruff and lint all existing code by @altheaden in https://github.com/E3SM-Project/polaris/pull/290
• Switch CI from miniconda to micromamba by @altheaden in https://github.com/E3SM-Project/polaris/pull/291
• Update building mapping files with moab by @xylar in https://github.com/E3SM-Project/polaris/pull/247
• Some clean up to ruff by @xylar in https://github.com/E3SM-Project/polaris/pull/292
• Separate dependencies in pyproject.toml by @altheaden in https://github.com/E3SM-Project/polaris/pull/294
• Add a new suite for testing the framework by @xylar in https://github.com/E3SM-Project/polaris/pull/296

Full Changelog: https://github.com/E3SM-Project/polaris/compare/0.5.0...0.6.0

Cryosphere - Sea Ice - Python
Published by xylar about 1 year ago

Polaris - v0.5.0

What's Changed

• Add list of authors to pyproject.toml by @altheaden in https://github.com/E3SM-Project/polaris/pull/246
• Update to v0.5.0-alpha.1 by @xylar in https://github.com/E3SM-Project/polaris/pull/243
• Add barotropic gyre task by @cbegeman in https://github.com/E3SM-Project/polaris/pull/241
• Add convergence tasks for space and time only by @cbegeman in https://github.com/E3SM-Project/polaris/pull/236
• Fix manufactured solution viz step by @xylar in https://github.com/E3SM-Project/polaris/pull/250
• Updates related to Omega IOStreams by @xylar in https://github.com/E3SM-Project/polaris/pull/231
• Support the Omega time coordinate by @xylar in https://github.com/E3SM-Project/polaris/pull/249
• Fix the load script to reinstall polaris when needed by @xylar in https://github.com/E3SM-Project/polaris/pull/254
• Add Omega support to Cosine Bell tests by @xylar in https://github.com/E3SM-Project/polaris/pull/242
• Add a restart test to cosine bell by @xylar in https://github.com/E3SM-Project/polaris/pull/251
• Add a cosine-bell decomposition test by @xylar in https://github.com/E3SM-Project/polaris/pull/253
• Pre-commit updates and fixes by @altheaden in https://github.com/E3SM-Project/polaris/pull/258
• Extend manufactured solution to del2 and del4 by @cbegeman in https://github.com/E3SM-Project/polaris/pull/234
• Fix directory permissions not being updated by @altheaden in https://github.com/E3SM-Project/polaris/pull/259
• Add pre-commit autoupdate workflow by @altheaden in https://github.com/E3SM-Project/polaris/pull/260
• Use separate conda cache directories in CI by @altheaden in https://github.com/E3SM-Project/polaris/pull/261
• Temporarily constrain dask by @xylar in https://github.com/E3SM-Project/polaris/pull/264
• Add support for amdclang and amdclanggpu on Frontier by @xylar in https://github.com/E3SM-Project/polaris/pull/263
• Add support for omega sphere transport tests by @cbegeman in https://github.com/E3SM-Project/polaris/pull/262
• Fix graph file symlink in baroclinic channel RPE test by @xylar in https://github.com/E3SM-Project/polaris/pull/266
• Fix inertial gravity wave test by @xylar in https://github.com/E3SM-Project/polaris/pull/267
• Exclude latest uxarray 2025.01.0 by @xylar in https://github.com/E3SM-Project/polaris/pull/269
• Fix refinement factors in cosine bell by @xylar in https://github.com/E3SM-Project/polaris/pull/268
• Don't include v0.1.0 in the docs by @xylar in https://github.com/E3SM-Project/polaris/pull/271
• Update Polaris logo by @xylar in https://github.com/E3SM-Project/polaris/pull/272
• Update pre-commit and its dependencies by @github-actions in https://github.com/E3SM-Project/polaris/pull/273
• Switch to mosaic for all plotting functionality by @andrewdnolan in https://github.com/E3SM-Project/polaris/pull/256
• Drop support for Python 3.9 and add support for Python 3.13 by @altheaden in https://github.com/E3SM-Project/polaris/pull/265
• Update pre-commit and its dependencies by @github-actions in https://github.com/E3SM-Project/polaris/pull/277
• Update pre-commit and its dependencies by @github-actions in https://github.com/E3SM-Project/polaris/pull/279
• Fix colormap limits for spherical viz by @cbegeman in https://github.com/E3SM-Project/polaris/pull/278
• Remove most of user's quick start by @xylar in https://github.com/E3SM-Project/polaris/pull/280
• Update omega pr suite by @cbegeman in https://github.com/E3SM-Project/polaris/pull/281
• Update tests to support Omega time slices by @xylar in https://github.com/E3SM-Project/polaris/pull/276
• Update pre-commit and its dependencies by @github-actions in https://github.com/E3SM-Project/polaris/pull/283

New Contributors

• @andrewdnolan made their first contribution in https://github.com/E3SM-Project/polaris/pull/256

Full Changelog: https://github.com/E3SM-Project/polaris/compare/0.4.0...0.5.0

Cryosphere - Sea Ice - Python
Published by xylar over 1 year ago

Polaris - v0.4.0

What's Changed

• Update to 0.4.0-alpha.1 by @xylar in https://github.com/E3SM-Project/polaris/pull/204
• Fix the bisect utility by @xylar in https://github.com/E3SM-Project/polaris/pull/206
• Remove unused bashrc functions by @altheaden in https://github.com/E3SM-Project/polaris/pull/208
• Cleanup configure_polaris_envs.py and deploy/shared.py by @altheaden in https://github.com/E3SM-Project/polaris/pull/209
• Standardize styling for all references to Omega by @altheaden in https://github.com/E3SM-Project/polaris/pull/210
• Add nvidia to chicoma-cpu by @xylar in https://github.com/E3SM-Project/polaris/pull/211
• Add link to Omega CTest in Quick Start by @altheaden in https://github.com/E3SM-Project/polaris/pull/212
• Fix deployment on unknown machines by @xylar in https://github.com/E3SM-Project/polaris/pull/214
• Fix docs typos and add link to mache docs by @altheaden in https://github.com/E3SM-Project/polaris/pull/215
• Change references from compass to polaris by @altheaden in https://github.com/E3SM-Project/polaris/pull/218
• Remove polaris clean from check polaris commands by @altheaden in https://github.com/E3SM-Project/polaris/pull/217
• Fix how yaml model config options are update by @xylar in https://github.com/E3SM-Project/polaris/pull/219
• Bootstrap cleanup by @altheaden in https://github.com/E3SM-Project/polaris/pull/216
• Add docstrings to deploy package by @altheaden in https://github.com/E3SM-Project/polaris/pull/220
• Add support for python 3.12 by @altheaden in https://github.com/E3SM-Project/polaris/pull/222
• Tweak behavior of CI workflows by @altheaden in https://github.com/E3SM-Project/polaris/pull/223
• Add Althea as additional dependabot reviewer by @altheaden in https://github.com/E3SM-Project/polaris/pull/224
• Better support for Omega in Polaris by @xylar in https://github.com/E3SM-Project/polaris/pull/221
• Add additional flags to pip install command in docs and deployment by @altheaden in https://github.com/E3SM-Project/polaris/pull/226
• Update E3SM-Project submodule by @xylar in https://github.com/E3SM-Project/polaris/pull/228
• Set default model for mpas_to_yaml to mpas-ocean by @xylar in https://github.com/E3SM-Project/polaris/pull/227
• Fixup partition file presence by @cbegeman in https://github.com/E3SM-Project/polaris/pull/225
• Update pre-commit dependencies by @xylar in https://github.com/E3SM-Project/polaris/pull/230
• Enhance spherical tracer transport test viz by @cbegeman in https://github.com/E3SM-Project/polaris/pull/233
• Fixup graph paths for cached inputs by @cbegeman in https://github.com/E3SM-Project/polaris/pull/235
• Set default time_integrator for Omega by @xylar in https://github.com/E3SM-Project/polaris/pull/232
• Clean up the docs by @xylar in https://github.com/E3SM-Project/polaris/pull/238
• Add map between MPAS-Ocean and Omega variables by @xylar in https://github.com/E3SM-Project/polaris/pull/237
• Map time integrator for convergence tests by @cbegeman in https://github.com/E3SM-Project/polaris/pull/239
• Remove git from polaris environment by @xylar in https://github.com/E3SM-Project/polaris/pull/240
• Switch setup configuration to to pyproject.toml by @altheaden in https://github.com/E3SM-Project/polaris/pull/244
• Fix small typo in ctest path by @altheaden in https://github.com/E3SM-Project/polaris/pull/245

Full Changelog: https://github.com/E3SM-Project/polaris/compare/0.3.0...0.4.0

Cryosphere - Sea Ice - Python
Published by xylar over 1 year ago

Polaris - v0.3.0

What's Changed

• Split spack software and libs by @xylar in https://github.com/E3SM-Project/polaris/pull/165
• Add jigsaw-python as a submodule by @xylar in https://github.com/E3SM-Project/polaris/pull/166
• Add metis and parmetis to spack build by @xylar in https://github.com/E3SM-Project/polaris/pull/162
• Add MOAB to the spack build by @xylar in https://github.com/E3SM-Project/polaris/pull/176
• Update Perlmutter support by @xylar in https://github.com/E3SM-Project/polaris/pull/167
• Update scorpio to v1.4.2 by @xylar in https://github.com/E3SM-Project/polaris/pull/178
• Add Frontier as a supported machine by @xylar in https://github.com/E3SM-Project/polaris/pull/168
• Update Omega submodule by @xylar in https://github.com/E3SM-Project/polaris/pull/179
• Fix slurm handling of allocatable cores by @xylar in https://github.com/E3SM-Project/polaris/pull/181
• Fix cores_per_node for Frontier by @xylar in https://github.com/E3SM-Project/polaris/pull/180
• Remove gnu with mvapich on Anvil by @xylar in https://github.com/E3SM-Project/polaris/pull/182
• Fix libnetcdf in jigsaw build by @xylar in https://github.com/E3SM-Project/polaris/pull/184
• Fix cores_per_node calculation on Compy and Anvil by @xylar in https://github.com/E3SM-Project/polaris/pull/185
• Update to 0.3.0-alpha.1 by @xylar in https://github.com/E3SM-Project/polaris/pull/177
• Fix conda install before Jigsaw build by @xylar in https://github.com/E3SM-Project/polaris/pull/186
• Add utility for building Omega and running ctests by @xylar in https://github.com/E3SM-Project/polaris/pull/170
• Bump pre-commit/action from 3.0.0 to 3.0.1 by @dependabot in https://github.com/E3SM-Project/polaris/pull/189
• Switch the mesh used for Omega CTests by @xylar in https://github.com/E3SM-Project/polaris/pull/190
• Fix visualization of edge quantities with periodic boundaries by @cbegeman in https://github.com/E3SM-Project/polaris/pull/150
• Workaround for z-star minimum number of vertical levels by @cbegeman in https://github.com/E3SM-Project/polaris/pull/152
• Fix omega ctest mesh by @xylar in https://github.com/E3SM-Project/polaris/pull/194
• Update docs link to newer URL style by @altheaden in https://github.com/E3SM-Project/polaris/pull/195
• Add c_stdlib to jigsaw build deps by @xylar in https://github.com/E3SM-Project/polaris/pull/196
• Update to v0.3.0-alpha.2 by @xylar in https://github.com/E3SM-Project/polaris/pull/197
• Set permissions for Omega CTest downloads by @xylar in https://github.com/E3SM-Project/polaris/pull/199
• Cull ISOMIP+ planar base mesh by @xylar in https://github.com/E3SM-Project/polaris/pull/201
• Don't smooth ISOMIP+ topography on base mesh by @xylar in https://github.com/E3SM-Project/polaris/pull/202
• Add support for creating mapping files with mbtempest by @xylar in https://github.com/E3SM-Project/polaris/pull/203
• Port ice_shelf_2d test cases by @cbegeman in https://github.com/E3SM-Project/polaris/pull/158
• Add gpus-per-node to job scripts and resources by @xylar in https://github.com/E3SM-Project/polaris/pull/207

Full Changelog: https://github.com/E3SM-Project/polaris/compare/0.2.0...0.3.0

Cryosphere - Sea Ice - Python
Published by xylar over 1 year ago

Polaris - v0.2.0

What's Changed

• Update to v0.2.0 by @xylar in https://github.com/E3SM-Project/polaris/pull/103
• Add a polaris logo by @xylar in https://github.com/E3SM-Project/polaris/pull/107
• Modularization and cleanup by @altheaden in https://github.com/E3SM-Project/polaris/pull/106
• Fix dependencies in inertial gravity wave convergence test by @altheaden in https://github.com/E3SM-Project/polaris/pull/105
• Add timers to steps as they run in a suite or task by @xylar in https://github.com/E3SM-Project/polaris/pull/112
• Rename TestCase --> Task by @xylar in https://github.com/E3SM-Project/polaris/pull/110
• Remove test groups by @xylar in https://github.com/E3SM-Project/polaris/pull/111
• Reorganize validation by @xylar in https://github.com/E3SM-Project/polaris/pull/113
• Add support for shared steps by @xylar in https://github.com/E3SM-Project/polaris/pull/116
• Reorganize tasks to use shared steps by @xylar in https://github.com/E3SM-Project/polaris/pull/117
• New shared steps capability design doc by @cbegeman in https://github.com/E3SM-Project/polaris/pull/109
• Update to mpas_tools v0.23.0 by @xylar in https://github.com/E3SM-Project/polaris/pull/121
• Fix detecting step already added to task by @xylar in https://github.com/E3SM-Project/polaris/pull/122
• Clean up RPE analysis step and framework by @xylar in https://github.com/E3SM-Project/polaris/pull/123
• Updates for pyremap >= 1.1.0 by @xylar in https://github.com/E3SM-Project/polaris/pull/124
• Add shared ocean framework for spherical convergence tests by @xylar in https://github.com/E3SM-Project/polaris/pull/119
• Add support for shared config options by @xylar in https://github.com/E3SM-Project/polaris/pull/125
• Raise error only at task level on baseline failure by @xylar in https://github.com/E3SM-Project/polaris/pull/128
• Shared ocean spherical convergence analysis step by @cbegeman in https://github.com/E3SM-Project/polaris/pull/126
• Use MPAS-Tools for great circle distance in cosine bell tests by @cbegeman in https://github.com/E3SM-Project/polaris/pull/127
• Use common matplotlib style sheet in all ocean plots by @xylar in https://github.com/E3SM-Project/polaris/pull/129
• Clean up and add method to spherical convergence analysis by @xylar in https://github.com/E3SM-Project/polaris/pull/130
• Only print task baseline status if basline compared by @xylar in https://github.com/E3SM-Project/polaris/pull/133
• Enhance shared convergence steps by @cbegeman in https://github.com/E3SM-Project/polaris/pull/131
• Add geostrophic convergence test (Williamson Test 2) by @xylar in https://github.com/E3SM-Project/polaris/pull/120
• Fix conversion to absolute paths in config files by @xylar in https://github.com/E3SM-Project/polaris/pull/136
• Fix steps_to_run for shared config files by @xylar in https://github.com/E3SM-Project/polaris/pull/134
• Fixes to polaris suite and geostrophic docs by @xylar in https://github.com/E3SM-Project/polaris/pull/137
• Set config.filepath after loading new config options by @xylar in https://github.com/E3SM-Project/polaris/pull/138
• Port sphere transport test group for ocean components by @cbegeman in https://github.com/E3SM-Project/polaris/pull/104
• Use Separate geostrophic thresholds for h and norm. vel. by @xylar in https://github.com/E3SM-Project/polaris/pull/139
• Drop python 3.8 by @xylar in https://github.com/E3SM-Project/polaris/pull/142
• Switch spherical viz to use uxarray and holoviews by @xylar in https://github.com/E3SM-Project/polaris/pull/140
• Clean up plot_horiz_field() by @xylar in https://github.com/E3SM-Project/polaris/pull/143
• Allow multiple tasks to be set up with -t flag by @xylar in https://github.com/E3SM-Project/polaris/pull/135
• Fix path to cached polaris data on morpheus by @xylar in https://github.com/E3SM-Project/polaris/pull/145
• Port changes to grid_1d package from Compass by @xylar in https://github.com/E3SM-Project/polaris/pull/147
• Allow patches to be reused in plot_horiz_field() by @xylar in https://github.com/E3SM-Project/polaris/pull/146
• Fix typo in planar horiz viz by @xylar in https://github.com/E3SM-Project/polaris/pull/148
• Add functions for computing and plotting transects by @xylar in https://github.com/E3SM-Project/polaris/pull/144
• Fix issues with shared config files by @xylar in https://github.com/E3SM-Project/polaris/pull/157
• Add steps for ISOMIP+ base and culled meshes by @xylar in https://github.com/E3SM-Project/polaris/pull/141
• Remove mamba command and switch to Miniforge3 by @xylar in https://github.com/E3SM-Project/polaris/pull/161
• Port ocean internal wave test by @cbegeman in https://github.com/E3SM-Project/polaris/pull/153
• Add a version check to load script by @xylar in https://github.com/E3SM-Project/polaris/pull/156
• Removing tracers in variable list that have been turned off by default by @darincomeau in https://github.com/E3SM-Project/polaris/pull/160
• Use only Polaris release version is spack env name by @xylar in https://github.com/E3SM-Project/polaris/pull/164
• Update morpheus spack build by @xylar in https://github.com/E3SM-Project/polaris/pull/169
• Add dependabot for github actions by @xylar in https://github.com/E3SM-Project/polaris/pull/171
• Fix dependabot yaml indentation by @xylar in https://github.com/E3SM-Project/polaris/pull/172
• Bump actions/checkout from 3 to 4 by @dependabot in https://github.com/E3SM-Project/polaris/pull/173
• Bump actions/cache from 3 to 4 by @dependabot in https://github.com/E3SM-Project/polaris/pull/175
• Bump actions/setup-python from 3 to 5 by @dependabot in https://github.com/E3SM-Project/polaris/pull/174
• Update Omega submodule by @xylar in https://github.com/E3SM-Project/polaris/pull/163

Full Changelog: https://github.com/E3SM-Project/polaris/compare/0.1.0...0.2.0

Cryosphere - Sea Ice - Python
Published by xylar over 1 year ago

Polaris - v0.1.0

What's Changed

• Add pre-commit checks by @xylar in https://github.com/E3SM-Project/polaris/pull/1
• Add a .gitignore by @xylar in https://github.com/E3SM-Project/polaris/pull/2
• Add pull request template by @xylar in https://github.com/E3SM-Project/polaris/pull/3
• Add basic docs by @xylar in https://github.com/E3SM-Project/polaris/pull/4
• Build polaris and docs in github action by @xylar in https://github.com/E3SM-Project/polaris/pull/5
• Fix pushing docs to gh-pages by @xylar in https://github.com/E3SM-Project/polaris/pull/6
• Fix docs by @xylar in https://github.com/E3SM-Project/polaris/pull/7
• Add a configure script and support files by @xylar in https://github.com/E3SM-Project/polaris/pull/8
• Add config files for supported machines by @xylar in https://github.com/E3SM-Project/polaris/pull/9
• Add the compass license file by @xylar in https://github.com/E3SM-Project/polaris/pull/10
• Fix copying docs by @xylar in https://github.com/E3SM-Project/polaris/pull/11
• Fix small README typo by @jhkennedy in https://github.com/E3SM-Project/polaris/pull/12
• Add versions side bar by @xylar in https://github.com/E3SM-Project/polaris/pull/13
• Port most of the compass framework by @xylar in https://github.com/E3SM-Project/polaris/pull/14
• Add more documentation by @xylar in https://github.com/E3SM-Project/polaris/pull/15
• Add MPAS-Ocean, OMEGA and MALI submodules by @xylar in https://github.com/E3SM-Project/polaris/pull/16
• Add utilities from compass by @xylar in https://github.com/E3SM-Project/polaris/pull/17
• Remove namelist and streams from cosine bell init by @xylar in https://github.com/E3SM-Project/polaris/pull/19
• Add polaris cache command by @xylar in https://github.com/E3SM-Project/polaris/pull/18
• Add ModelStep class by @xylar in https://github.com/E3SM-Project/polaris/pull/20
• Add ocean docs to the User's Guide by @xylar in https://github.com/E3SM-Project/polaris/pull/21
• Fix deprecated calls to importlib.resources by @xylar in https://github.com/E3SM-Project/polaris/pull/22
• Add support for model config described by yaml files by @xylar in https://github.com/E3SM-Project/polaris/pull/23
• Add ocean model descriptions to docs by @cbegeman in https://github.com/E3SM-Project/polaris/pull/24
• General clean-up PR by @xylar in https://github.com/E3SM-Project/polaris/pull/26
• Ocean resources from config options by @xylar in https://github.com/E3SM-Project/polaris/pull/29
• Change how dynamic model configuration is update by @xylar in https://github.com/E3SM-Project/polaris/pull/28
• Port the baroclinic channel test group from compass by @xylar in https://github.com/E3SM-Project/polaris/pull/27
• Add test suite guidance to documentation by @cbegeman in https://github.com/E3SM-Project/polaris/pull/25
• Fix name of configure_polaris_envs.py in docs by @xylar in https://github.com/E3SM-Project/polaris/pull/31
• Update to polaris 0.1.0-alpha.3 by @xylar in https://github.com/E3SM-Project/polaris/pull/32
• Add planar horizontal viz by @cbegeman in https://github.com/E3SM-Project/polaris/pull/33
• Add job script to steps by @xylar in https://github.com/E3SM-Project/polaris/pull/36
• Reorganize the framework and organization in the developer's guide by @xylar in https://github.com/E3SM-Project/polaris/pull/38
• Add dependencies to Step class by @xylar in https://github.com/E3SM-Project/polaris/pull/39
• Add mapping file step by @xylar in https://github.com/E3SM-Project/polaris/pull/40
• Add global map plots by @xylar in https://github.com/E3SM-Project/polaris/pull/34
• Adjust ny for baroclinic channel to give 500 km domain by @xylar in https://github.com/E3SM-Project/polaris/pull/37
• Fix bug in changing permissions on downloaded files by @xylar in https://github.com/E3SM-Project/polaris/pull/42
• Various pieces of clean-up to the docs by @xylar in https://github.com/E3SM-Project/polaris/pull/44
• Use shorter imports for Component, TestGroup, etc. by @xylar in https://github.com/E3SM-Project/polaris/pull/43
• Fix error when building docs on main after merge by @xylar in https://github.com/E3SM-Project/polaris/pull/47
• Clean up cosine bell test by @xylar in https://github.com/E3SM-Project/polaris/pull/46
• Clean up baroclinic channel by @xylar in https://github.com/E3SM-Project/polaris/pull/45
• Add User's Guide template for test groups by @cbegeman in https://github.com/E3SM-Project/polaris/pull/41
• Port single column test group by @cbegeman in https://github.com/E3SM-Project/polaris/pull/49
• Add a tutorial for adding a new test group by @xylar in https://github.com/E3SM-Project/polaris/pull/48
• Find netcdf/pnetcdf with env vars on Chicoma and PM by @xylar in https://github.com/E3SM-Project/polaris/pull/50
• Fix single_column test in pr suite by @xylar in https://github.com/E3SM-Project/polaris/pull/51
• Fixup quick-start and tutorial by @cbegeman in https://github.com/E3SM-Project/polaris/pull/55
• Fixup tutorial by @cbegeman in https://github.com/E3SM-Project/polaris/pull/56
• Make subdirectories for symlinks for input files by @xylar in https://github.com/E3SM-Project/polaris/pull/59
• Explicitly specify nodes in srun calls by @xylar in https://github.com/E3SM-Project/polaris/pull/54
• Add a MANIFEST.in by @xylar in https://github.com/E3SM-Project/polaris/pull/64
• Fix check for inputs in subdirectories by @xylar in https://github.com/E3SM-Project/polaris/pull/63
• Add shared single layer yaml file by @sbrus89 in https://github.com/E3SM-Project/polaris/pull/57
• Clean up outdated format strings by @altheaden in https://github.com/E3SM-Project/polaris/pull/69
• Switch MappingFileStep to be a command-line step by @xylar in https://github.com/E3SM-Project/polaris/pull/68
• Rename steps_not_to_run and --no-steps by @altheaden in https://github.com/E3SM-Project/polaris/pull/73
• Make ocean ntasks and min_tasks a multiple of 4 by @xylar in https://github.com/E3SM-Project/polaris/pull/52
• Add surface forcing and restoring to single_column test group by @cbegeman in https://github.com/E3SM-Project/polaris/pull/66
• Logger cleanup and clarification by @altheaden in https://github.com/E3SM-Project/polaris/pull/75
• Update guidance on switching between branches by @xylar in https://github.com/E3SM-Project/polaris/pull/77
• Check available parallel resources only once by @altheaden in https://github.com/E3SM-Project/polaris/pull/76
• Separate creating parallel command and running command by @altheaden in https://github.com/E3SM-Project/polaris/pull/78
• Add an ideal age tracer case to the single column test group by @katsmith133 in https://github.com/E3SM-Project/polaris/pull/60
• Change algorithm for constraining resources by @altheaden in https://github.com/E3SM-Project/polaris/pull/79
• Change cosine bell to be single layer by @lconlon in https://github.com/E3SM-Project/polaris/pull/67
• Fix log filename for steps by @xylar in https://github.com/E3SM-Project/polaris/pull/82
• Make versions of cosine bell with and without viz steps by @xylar in https://github.com/E3SM-Project/polaris/pull/65
• Make pickle file of dependency an input by @altheaden in https://github.com/E3SM-Project/polaris/pull/80
• Remove unused check_parallel_system function by @altheaden in https://github.com/E3SM-Project/polaris/pull/81
• Get Slurm options in a separate function by @altheaden in https://github.com/E3SM-Project/polaris/pull/83
• Add Inertial gravity wave test group by @sbrus89 in https://github.com/E3SM-Project/polaris/pull/62
• Pull out common setup between run procedures by @altheaden in https://github.com/E3SM-Project/polaris/pull/84
• Rename namelist implicit bottom drag namelist option by @xylar in https://github.com/E3SM-Project/polaris/pull/87
• Ignore nonexistent step_after_run.pickle file by @altheaden in https://github.com/E3SM-Project/polaris/pull/86
• Add manufactured solution test group by @cbegeman in https://github.com/E3SM-Project/polaris/pull/72
• Fix equations in baroclinic channel User's Guide by @xylar in https://github.com/E3SM-Project/polaris/pull/88
• Remove manufactured_soluiton test case from suites by @xylar in https://github.com/E3SM-Project/polaris/pull/92
• Reformat command line help descriptions by @altheaden in https://github.com/E3SM-Project/polaris/pull/90
• Update step inputs attribute with input filenames by @altheaden in https://github.com/E3SM-Project/polaris/pull/93
• Fixup cosine bell test: Allow user changes to vert_levels cfg option by @cbegeman in https://github.com/E3SM-Project/polaris/pull/94
• Add flynt package to linter for updating format strings by @altheaden in https://github.com/E3SM-Project/polaris/pull/74
• Standardize step and test case names by @cbegeman in https://github.com/E3SM-Project/polaris/pull/96
• Assume mesh variables only in mesh file by @cbegeman in https://github.com/E3SM-Project/polaris/pull/97
• A few fixes to the docs by @xylar in https://github.com/E3SM-Project/polaris/pull/98
• Add dependency in restart test case by @xylar in https://github.com/E3SM-Project/polaris/pull/95
• Add sea ice components along with single column test case by @darincomeau in https://github.com/E3SM-Project/polaris/pull/71
• Fix cosine bell viz step by @xylar in https://github.com/E3SM-Project/polaris/pull/100
• Remove steps from steps_to_run in baroclinic_channel RPE by @xylar in https://github.com/E3SM-Project/polaris/pull/102
• Get maxLevelCell from ds, not ds_mesh in viz by @xylar in https://github.com/E3SM-Project/polaris/pull/101
• Make cell count heuristic by @altheaden in https://github.com/E3SM-Project/polaris/pull/99

New Contributors

• @jhkennedy made their first contribution in https://github.com/E3SM-Project/polaris/pull/12
• @sbrus89 made their first contribution in https://github.com/E3SM-Project/polaris/pull/57
• @katsmith133 made their first contribution in https://github.com/E3SM-Project/polaris/pull/60
• @lconlon made their first contribution in https://github.com/E3SM-Project/polaris/pull/67

Full Changelog: https://github.com/E3SM-Project/polaris/commits/0.1.0

Cryosphere - Sea Ice - Python
Published by xylar over 1 year ago