Wild Me Scoutbot

Open models for animal count and classification from aerial surveys; pairs with the Scout project.
https://github.com/WildMeOrg/scoutbot

Last synced: about 7 hours ago
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Repository metadata

The computer vision for Wild Me's Scout project

• Host: GitHub
• URL: https://github.com/WildMeOrg/scoutbot
• Owner: WildMeOrg
• License: apache-2.0
• Created: 2022-09-12T21:34:07.000Z (over 1 year ago)
• Default Branch: main
• Last Pushed: 2024-03-23T19:35:52.000Z (about 2 months ago)
• Last Synced: 2024-04-14T12:18:50.350Z (27 days ago)
• Language: Jupyter Notebook
• Size: 4.1 MB
• Stars: 4
• Watchers: 6
• Forks: 3
• Open Issues: 0
• Metadata Files:
  • Readme: README.rst
  • Changelog: CHANGELOG.rst
  • License: LICENSE

README

        
================

Wild Me ScoutBot

================

|Tests| |Codecov| |Wheel| |Docker| |ReadTheDocs| |Huggingface|

.. contents:: Quick Links

    :backlinks: none

.. sectnum::

How to Install

--------------

.. code-block:: bash

    pip install scoutbot

or, from source:

.. code-block:: bash

   git clone https://github.com/WildMeOrg/scoutbot

   cd scoutbot

   pip install -e .

To then add GPU acceleration, you need to replace `onnxruntime` with `onnxruntime-gpu`:

.. code-block:: bash

   pip uninstall -y onnxruntime

   pip install onnxruntime-gpu

How to Run

----------

You can run the tile-based Gradio demo with:

.. code-block:: bash

   python app.py

or, you can run the image-based Gradio demo with:

.. code-block:: bash

   python app2.py

To run with Docker:

.. code-block:: bash

    docker run \

       -it \

       --rm \

       -p 7860:7860 \

       -e CONFIG=phase1 \

       -e WIC_BATCH_SIZE=512 \

       --gpus all \

       --name scoutbot \

       wildme/scoutbot:main \

       python3 app2.py

To run with Docker Compose:

.. code-block:: yaml

    version: "3"

    services:

      scoutbot:

        image: wildme/scoutbot:main

        command: python3 app2.py

        ports:

          - "7860:7860"

        environment:

          CONFIG: phase1

          WIC_BATCH_SIZE: 512

        restart: unless-stopped

        deploy:

          resources:

            reservations:

              devices:

                - driver: nvidia

                  device_ids: ["all"]

                  capabilities: [gpu]

and run ``docker compose up -d``.

How to Build and Deploy

-----------------------

Docker Hub

==========

The application can also be built into a Docker image and is hosted on Docker Hub as ``wildme/scoutbot:latest``.  Any time the ``main`` branch is updated or a tagged release is made (see the PyPI instructions below), an automated GitHub CD action will build and deploy the newest image to Docker Hub automatically.

To do this manually, use the code below:

.. code-block:: bash

    docker login

    export DOCKER_BUILDKIT=1

    export DOCKER_CLI_EXPERIMENTAL=enabled

    docker buildx create --name multi-arch-builder --use

    docker buildx build \

        -t wildme/scoutbot:latest \

        --platform linux/amd64 \

        --push \

        .

PyPI

====

To upload the latest ScoutBot version to the Python Package Index (PyPI), follow the steps below:

#. Edit ``scoutbot/__init__.py:65`` and set ``VERSION`` to the desired version

    .. code-block:: python

        VERSION = 'X.Y.Z'

#. Push any changes and version update to the ``main`` branch on GitHub and wait for CI tests to pass

    .. code-block:: bash

        git pull origin main

        git commit -am "Release for Version X.Y.Z"

        git push origin main

#. Tag the ``main`` branch as a new release using the `SemVer pattern `_ (e.g., ``vX.Y.Z``)

    .. code-block:: bash

        git pull origin main

        git tag vX.Y.Z

        git push origin vX.Y.Z

#. Wait for the automated GitHub CD actions to build and push to `PyPI `_ and `Docker Hub `_.

Tests and Coverage

------------------

You can run the automated tests in the ``tests/`` folder by running:

.. code-block:: bash

    pip install -r requirements.optional.txt

    pytest

You may also get a coverage percentage by running:

.. code-block:: bash

    coverage html

and open the `coverage/html/index.html` file in your browser.

Building Documentation

----------------------

There is Sphinx documentation in the ``docs/`` folder, which can be built by running:

.. code-block:: bash

    cd docs/

    pip install -r requirements.optional.txt

    sphinx-build -M html . build/

Logging

-------

The script uses Python's built-in logging functionality called ``logging``.  All print functions are replaced with ``log.info()``, which sends the output to two places:

#. the terminal window, and

#. the file `scoutbot.log`

Code Formatting

---------------

It's recommended that you use ``pre-commit`` to ensure linting procedures are run

on any code you write.  See `pre-commit.com `_ for more information.

Reference `pre-commit's installation instructions `_ for software installation on your OS/platform. After you have the software installed, run ``pre-commit install`` on the command line. Now every time you commit to this project's code base the linter procedures will automatically run over the changed files.  To run pre-commit on files preemtively from the command line use:

.. code-block:: bash

    pip install -r requirements.optional.txt

    pre-commit run --all-files

The code base has been formatted by `Brunette `_, which is a fork and more configurable version of `Black `_.  Furthermore, try to conform to ``PEP8``.  You should set up your preferred editor to use ``flake8`` as its Python linter, but pre-commit will ensure compliance before a git commit is completed.  This will use the ``flake8`` configuration within ``setup.cfg``, which ignores several errors and stylistic considerations.  See the ``setup.cfg`` file for a full and accurate listing of stylistic codes to ignore.

.. |Tests| image:: https://github.com/WildMeOrg/scoutbot/actions/workflows/testing.yml/badge.svg?branch=main

    :target: https://github.com/WildMeOrg/scoutbot/actions/workflows/testing.yml

    :alt: GitHub CI

.. |Codecov| image:: https://codecov.io/gh/WildMeOrg/scoutbot/branch/main/graph/badge.svg?token=FR6ITMWQNI

    :target: https://app.codecov.io/gh/WildMeOrg/scoutbot

    :alt: Codecov

.. |Wheel| image:: https://github.com/WildMeOrg/scoutbot/actions/workflows/python-publish.yml/badge.svg

    :target: https://github.com/WildMeOrg/scoutbot/actions/workflows/python-publish.yml

    :alt: Python Wheel

.. |Docker| image:: https://img.shields.io/docker/image-size/wildme/scoutbot/latest

    :target: https://hub.docker.com/r/wildme/scoutbot

    :alt: Docker

.. |ReadTheDocs| image:: https://readthedocs.org/projects/scoutbot/badge/?version=latest

    :target: https://wildme-scoutbot.readthedocs.io/en/latest/?badge=latest

    :alt: ReadTheDocs

.. |Huggingface| image:: https://img.shields.io/badge/HuggingFace-running-success

    :target: https://huggingface.co/spaces/WildMeOrg/scoutbot

    :alt: Huggingface

      

---

Owner metadata

• Name: Wild Me
• Login: WildMeOrg
• Email: [email protected]
• Kind: organization
• Description: Conservation meets machine learning
• Website: https://wildme.org
• Location: Portland, OR
• Twitter: WildMeORG
• Company:
• Icon url: https://avatars.githubusercontent.com/u/20192494?v=4
• Repositories: 54
• Last ynced at: 2024-05-01T09:33:51.447Z
• Profile URL: https://github.com/WildMeOrg

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GitHub Events

Total

• Create event: 10
• Issues event: 2
• Release event: 2
• Watch event: 4
• Delete event: 2
• Issue comment event: 3
• Push event: 110
• Pull request review event: 3
• Pull request event: 12
• Fork event: 3

Last Year

• Create event: 5
• Delete event: 2
• Fork event: 2
• Issue comment event: 3
• Issues event: 2
• Pull request event: 12
• Pull request review event: 3
• Push event: 55
• Release event: 1
• Watch event: 4

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Committers metadata

Last synced: 1 day ago

Name	Email	Commits
LashaO	o****a@g****m	51
Jason Parham	b****e@g****m	50
Tanya	t****e@w****g	1
Jon Van Oast	j****n@w****g	1

Committer domains:

• wildme.org: 2

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Issue and Pull Request metadata

Last synced: 1 day ago

More stats: https://issues.ecosyste.ms/repositories/lookup?url=https://github.com/WildMeOrg/scoutbot

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Package metadata

• Total packages: 1
• Total downloads:
  • pypi: 124 last-month
• Total dependent packages: 0
• Total dependent repositories: 1
• Total versions: 18
• Total maintainers: 1

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Dependencies

Score: 7.608870629191259